Context Navigation

← Previous Ticket
Next Ticket →

Warning: Can't synchronize with repository "(default)" (/home/git/ome.git does not appear to be a Git repository.). Look in the Trac log for more information.

Notice: In order to edit this ticket you need to be either: a Product Owner, The owner or the reporter of the ticket, or, in case of a Task not yet assigned, a team_member"

Task #7335 (closed)

Opened 12 years ago

Closed 12 years ago

Last modified 12 years ago

BUG:tif import

Reported by:	omero-qa	Owned by:	cxallan
Priority:	minor	Milestone:	OMERO-4.4
Component:	from QA	Version:	n.a.
Keywords:	n.a.	Cc:	Kim.Linton@…
Resources:	n.a.	Referenced By:	n.a.
References:	n.a.	Remaining Time:	0.0d
Sprint:	n.a.

Description

http://qa.openmicroscopy.org.uk/qa/feedback/4054/

Comment: Hi There,

I tried to import this file and it failed. I am not sure why. Can you please help?

Cheers,

Kim Linton

Unable to locate Pixels:1
	at ome.formats.model.ChannelProcessor.process(ChannelProcessor.java:444)
	at ome.formats.OMEROMetadataStoreClient.postProcess(OMEROMetadataStoreClient.java:2101)
	at ome.formats.importer.ImportLibrary.importMetadata(ImportLibrary.java:349)
	at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:537)
	at org.openmicroscopy.shoola.env.data.OMEROGateway.importImage(OMEROGateway.java:6402)
	at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.importFile(OmeroImageServiceImpl.java:1191)
	at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.importFile(ImagesImporter.java:85)
	at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.access$000(ImagesImporter.java:54)
	at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter$1.doCall(ImagesImporter.java:111)
	at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144)
	at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226)
	at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126)
	at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165)
	at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:274)
	at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91)
	at java.lang.Thread.run(Thread.java:680)

References

Change History (3)

comment:1 Changed 12 years ago by jburel

Milestone changed from Unscheduled to OMERO-Beta4.4
Summary changed from BUG:Lif import to BUG:tif import

comment:2 Changed 12 years ago by Melissa Linkert <melissa@…>

Remaining Time set to 0
Resolution set to fixed
Status changed from new to closed

(In [2cf49a6963f99017c0017001192de6346c3ce3e5/bioformats.git]) Do not set names for Images that do not exist

The file sometimes contains labels for many more layers than are really
usable. These extra labels are now ignored, so that we do not end up
creating a bunch of nearly empty Images (thus causing OME-XML validation
and OMERO import to fail).

Closes #7335, closes #7337.

comment:3 Changed 12 years ago by Melissa Linkert <melissa@…>

(In [2cf49a6963f99017c0017001192de6346c3ce3e5/bioformats.git]) Do not set names for Images that do not exist

Closes #7335, closes #7337.

Note: See TracTickets for help on using tickets. You may also have a look at Agilo extensions to the ticket.

Download in other formats: