Task #2406 (closed)
Opened 14 years ago
Closed 14 years ago
BUG: Importing Flex
| Reported by: | cxallan | Owned by: | cxallan |
|---|---|---|---|
| Priority: | minor | Milestone: | OMERO-Beta4.2 |
| Component: | General | Version: | n.a. |
| Keywords: | n.a. | Cc: | |
| Resources: | n.a. | Referenced By: | n.a. |
| References: | n.a. | Remaining Time: | 0.0d |
| Sprint: | 2010-05-13 (9) |
Description
Change History (6)
comment:1 Changed 14 years ago by cxallan
comment:2 Changed 14 years ago by cxallan
- Owner changed from cxallan to mlinkert-x
comment:3 Changed 14 years ago by mlinkert
Should be fixed in bio-formats:r6352. There should be 384 Well objects; Well 50 (C3) should have a single WellSample? linked to it and every other Well should be empty.
comment:4 Changed 14 years ago by cxallan
- Status changed from new to assigned
comment:5 Changed 14 years ago by cxallan
- Owner changed from mlinkert-x to cxallan
comment:6 Changed 14 years ago by cxallan
- Remaining Time set to 0
- Resolution set to fixed
- Status changed from assigned to closed
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Exception during import:
2010-05-19 14:06:59,609 1098304 [2-thread-1] INFO ormats.importer.gui.LoggingImportMonitor - INTERNAL_EXCEPTION: /Users/callan/testimages/flex/Meas_01(2008-12-23_14-31-25).mea java.lang.RuntimeException: omero.InternalException serverStackTrace = "ome.conditions.InternalException: Wrapped Exception: (java.lang.NullPointerException): null at ome.formats.OMEROMetadataStore.handle(OMEROMetadataStore.java:869) at ome.formats.OMEROMetadataStore.updateObject(OMEROMetadataStore.java:253) at ome.services.blitz.impl.MetadataStoreI$4.doWork(MetadataStoreI.java:198) at sun.reflect.GeneratedMethodAccessor222.invoke(Unknown Source) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) at java.lang.reflect.Method.invoke(Method.java:597) at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) at ome.services.util.Executor$Impl$Interceptor.invoke(Executor.java:409) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) at ome.security.basic.EventHandler.invoke(EventHandler.java:144) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:111) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:175) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:111) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) at $Proxy54.doWork(Unknown Source) at ome.services.util.Executor$Impl.execute(Executor.java:339) at ome.services.throttling.Adapter.run(Adapter.java:51) at ome.services.throttling.InThreadThrottlingStrategy.runnableCall(InThreadThrottlingStrategy.java:89) at ome.services.blitz.impl.AbstractAmdServant.runnableCall(AbstractAmdServant.java:146) at ome.services.blitz.impl.MetadataStoreI.updateObjects_async(MetadataStoreI.java:183) at omero.api._MetadataStoreTie.updateObjects_async(_MetadataStoreTie.java:92) at omero.api._MetadataStoreDisp.___updateObjects(_MetadataStoreDisp.java:173) at omero.api._MetadataStoreDisp.__dispatch(_MetadataStoreDisp.java:337) at IceInternal.Incoming.invoke(Incoming.java:159) at Ice.ConnectionI.invokeAll(ConnectionI.java:2037) at Ice.ConnectionI.message(ConnectionI.java:972) at IceInternal.ThreadPool.run(ThreadPool.java:577) at IceInternal.ThreadPool.access$100(ThreadPool.java:12) at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971) "Looks like Well and WellSamples? are not correctly linked up (the indexes are off):