Task #2390 (closed)
Opened 14 years ago
Closed 14 years ago
BUG: importing bigtiff
Reported by: | jburel | Owned by: | cxallan |
---|---|---|---|
Priority: | blocker | Milestone: | OMERO-Beta4.2 |
Component: | Import | Version: | n.a. |
Keywords: | n.a. | Cc: | cxallan |
Resources: | n.a. | Referenced By: | n.a. |
References: | n.a. | Remaining Time: | 0.0d |
Sprint: | 2010-05-13 (9) |
Description
serverExceptionClass = "ome.conditions.InternalException" message = " Wrapped Exception: (java.lang.NullPointerException): null" at ome.formats.OMEROMetadataStoreClient.saveToDB(OMEROMetadataStoreClient.java:1800) at ome.formats.importer.ImportLibrary.importMetadata(ImportLibrary.java:257) at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:436) at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:340) at ome.formats.importer.gui.ImportHandler.importImages(ImportHandler.java:215) at ome.formats.importer.gui.ImportHandler.access$100(ImportHandler.java:59) at ome.formats.importer.gui.ImportHandler$2.run(ImportHandler.java:134) at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:417) at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:269) at java.util.concurrent.FutureTask.run(FutureTask.java:123) at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.access$301(ScheduledThreadPoolExecutor.java:65) at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:172) at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:651) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:676) at java.lang.Thread.run(Thread.java:613) Caused by: omero.InternalException serverStackTrace = "ome.conditions.InternalException: Wrapped Exception: (java.lang.NullPointerException): null at ome.formats.OMEROMetadataStore.handle(OMEROMetadataStore.java:582) at ome.formats.OMEROMetadataStore.updateObject(OMEROMetadataStore.java:182)
Change History (7)
comment:1 Changed 14 years ago by cxallan
- Status changed from new to closed
comment:3 Changed 14 years ago by cxallan
As of r7040 and bio-formats:r6301 still fails with:
2010-05-18 17:59:53,108 159627 [2-thread-1] DEBUG ome.formats.importer.gui.GuiImporter - loci.common.enumeration.EnumException: Unable to find IFDType with code: 52678 at loci.formats.tiff.IFDType.get(IFDType.java:84) at loci.formats.tiff.TiffParser.readTiffIFDEntry(TiffParser.java:910) at loci.formats.tiff.TiffParser.getIFD(TiffParser.java:329) at loci.formats.tiff.TiffParser.getIFDs(TiffParser.java:161) at loci.formats.tiff.TiffParser.getNonThumbnailIFDs(TiffParser.java:199) at loci.formats.in.MinimalTiffReader.initFile(MinimalTiffReader.java:293) at loci.formats.in.BaseTiffReader.initFile(BaseTiffReader.java:494) at loci.formats.FormatReader.setId(FormatReader.java:1012) at loci.formats.DelegateReader.setId(DelegateReader.java:216) at loci.formats.ImageReader.setId(ImageReader.java:644) at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:485) at loci.formats.ChannelFiller.setId(ChannelFiller.java:177) at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:485) at loci.formats.ChannelSeparator.setId(ChannelSeparator.java:238) at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:485) at ome.formats.importer.ImportLibrary.open(ImportLibrary.java:213) at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:399) at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:340) at ome.formats.importer.gui.ImportHandler.importImages(ImportHandler.java:215) at ome.formats.importer.gui.ImportHandler.access$1(ImportHandler.java:149) at ome.formats.importer.gui.ImportHandler$2.run(ImportHandler.java:134) at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:441) at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303) at java.util.concurrent.FutureTask.run(FutureTask.java:138) at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.access$301(ScheduledThreadPoolExecutor.java:98) at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:207) at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908) at java.lang.Thread.run(Thread.java:637)
comment:4 Changed 14 years ago by cxallan
- Owner changed from bwzloranger to mlinkert-x
- Status changed from reopened to new
comment:5 Changed 14 years ago by mlinkert
Fixed in bio-formats:r6339.
comment:6 Changed 14 years ago by cxallan
- Owner changed from mlinkert-x to cxallan
- Status changed from new to assigned
comment:7 Changed 14 years ago by cxallan
- Remaining Time set to 0
- Resolution set to fixed
- Status changed from assigned to closed
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