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Task #2377 (closed)

Opened 14 years ago

Closed 14 years ago

BUG: importing mng

Reported by: jburel Owned by: cxallan
Priority: blocker Milestone: OMERO-Beta4.2
Component: Import Version: n.a.
Keywords: n.a. Cc: cxallan
Resources: n.a. Referenced By: n.a.
References: n.a. Remaining Time: 0.0d
Sprint: 2010-05-13 (9)

Description 

2010-05-17 10:21:31,542 1967583    [2-thread-1] DEBUG      ome.formats.importer.gui.GuiImporter  - java.lang.IllegalArgumentException: 0 must not be null and positive.
	at ome.xml.r201004.primitives.PositiveInteger.<init>(PositiveInteger.java:41)
	at loci.formats.MetadataTools.populatePixels(MetadataTools.java:116)
	at loci.formats.MetadataTools.populatePixels(MetadataTools.java:80)
	at loci.formats.in.MNGReader.initFile(MNGReader.java:241)
	at loci.formats.FormatReader.setId(FormatReader.java:1011)

Change History (5)

comment:1 Changed 14 years ago by cxallan

  • Status changed from new to assigned

comment:2 Changed 14 years ago by cxallan

  • Owner changed from bwzloranger to mlinkert-x
  • Status changed from assigned to new

Exception with ​bio-formats:r6301:

2010-05-18 15:41:19,033 1113442    [2-thread-1] INFO   ormats.importer.gui.LoggingImportMonitor  - LOADING_IMAGE: Delta-gray-a8w.mng
2010-05-18 15:41:19,066 1113475    [2-thread-1] DEBUG      ome.formats.OMEROMetadataStoreClient  - Creating root!
2010-05-18 15:41:19,203 1113612    [2-thread-1] ERROR      ome.formats.importer.gui.GuiImporter  - EXCEPTION_EVENT
2010-05-18 15:41:19,205 1113614    [2-thread-1] DEBUG      ome.formats.OMEROMetadataStoreClient  - Creating root!
2010-05-18 15:41:19,208 1113617    [2-thread-1] ERROR    ome.formats.importer.gui.ImportHandler  - Generic error while importing image.
java.lang.IllegalArgumentException: 0 must not be null and positive.
	at ome.xml.r201004.primitives.PositiveInteger.<init>(PositiveInteger.java:41)
	at loci.formats.MetadataTools.populatePixels(MetadataTools.java:116)
	at loci.formats.MetadataTools.populatePixels(MetadataTools.java:80)
	at loci.formats.in.MNGReader.initFile(MNGReader.java:241)
	at loci.formats.FormatReader.setId(FormatReader.java:1012)
	at loci.formats.ImageReader.setId(ImageReader.java:644)
	at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:485)
	at loci.formats.ChannelFiller.setId(ChannelFiller.java:177)
	at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:485)
	at loci.formats.ChannelSeparator.setId(ChannelSeparator.java:238)
	at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:485)
	at ome.formats.importer.ImportLibrary.open(ImportLibrary.java:213)
	at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:399)
	at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:340)
	at ome.formats.importer.gui.ImportHandler.importImages(ImportHandler.java:215)
	at ome.formats.importer.gui.ImportHandler.access$1(ImportHandler.java:149)
	at ome.formats.importer.gui.ImportHandler$2.run(ImportHandler.java:134)
	at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:441)
	at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303)
	at java.util.concurrent.FutureTask.run(FutureTask.java:138)
	at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.access$301(ScheduledThreadPoolExecutor.java:98)
	at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:207)
	at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886)
	at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908)
	at java.lang.Thread.run(Thread.java:637)

comment:3 Changed 14 years ago by mlinkert

Fixed in ​bio-formats:r6335.

comment:4 Changed 14 years ago by cxallan

  • Owner changed from mlinkert-x to cxallan
  • Status changed from new to assigned

comment:5 Changed 14 years ago by cxallan

  • Remaining Time set to 0
  • Resolution set to fixed
  • Status changed from assigned to closed

(In [7043]) Upgrading to ​bio-formats:r6340. (Fixes #2358, #2377, #2380, #2381, #2390)

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