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Task #8150 (closed)

Opened 12 years ago

Closed 12 years ago

Last modified 12 years ago

BUG:Error handling MT

Reported by:	omero-qa	Owned by:	jburel
Priority:	major	Milestone:	OMERO-4.4
Component:	Insight	Version:	n.a.
Keywords:	n.a.	Cc:	m.porter@…
Resources:	n.a.	Referenced By:	n.a.
References:	n.a.	Remaining Time:	0.0d
Sprint:	2012-03-13 (10)

Description

http://qa.openmicroscopy.org.uk/qa/feedback/4224/

Comment: I was analysing histograms of an image, with the ROI nearly the size of the 512x512 plane. I was moving up in Z and seeing how the histogram changed, also comparing it to another image from a different experimental condition. I guess there were too many pixels :-(

java.lang.Exception: java.lang.OutOfMemoryError: Java heap space

	at java.util.HashMap.<init>(Unknown Source)

	at java.util.HashMap.<init>(Unknown Source)

	at java.util.LinkedHashMap.<init>(Unknown Source)

	at org.openmicroscopy.shoola.env.rnd.roi.ROIShapeStats.onStartPlane(ROIShapeStats.java:233)

	at org.openmicroscopy.shoola.env.rnd.roi.PointIterator.notifyPlaneStart(PointIterator.java:131)

	at org.openmicroscopy.shoola.env.rnd.roi.PointIterator.iterate(PointIterator.java:292)

	at org.openmicroscopy.shoola.env.rnd.roi.ROIAnalyser.analyze(ROIAnalyser.java:169)

	at org.openmicroscopy.shoola.env.data.views.calls.Analyser$1.doCall(Analyser.java:89)

	at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144)

	at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226)

	at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126)

	at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165)

	at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:274)

	at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91)

	at java.lang.Thread.run(Unknown Source)



	at org.openmicroscopy.shoola.env.ui.UserNotifierImpl.showErrorDialog(UserNotifierImpl.java:182)

	at org.openmicroscopy.shoola.env.ui.UserNotifierImpl.notifyError(UserNotifierImpl.java:271)

	at org.openmicroscopy.shoola.env.ui.UserNotifierImpl.notifyError(UserNotifierImpl.java:241)

	at org.openmicroscopy.shoola.agents.measurement.MeasurementViewerLoader.handleException(MeasurementViewerLoader.java:123)

	at org.openmicroscopy.shoola.env.data.events.DSCallAdapter.eventFired(DSCallAdapter.java:84)

	at org.openmicroscopy.shoola.env.data.views.BatchCallMonitor$1.run(BatchCallMonitor.java:124)

	at java.awt.event.InvocationEvent.dispatch(Unknown Source)

	at java.awt.EventQueue.dispatchEventImpl(Unknown Source)

	at java.awt.EventQueue.access$000(Unknown Source)

	at java.awt.EventQueue$1.run(Unknown Source)

	at java.awt.EventQueue$1.run(Unknown Source)

	at java.security.AccessController.doPrivileged(Native Method)

	at java.security.AccessControlContext$1.doIntersectionPrivilege(Unknown Source)

	at java.awt.EventQueue.dispatchEvent(Unknown Source)

	at java.awt.EventDispatchThread.pumpOneEventForFilters(Unknown Source)

	at java.awt.EventDispatchThread.pumpEventsForFilter(Unknown Source)

	at java.awt.EventDispatchThread.pumpEventsForHierarchy(Unknown Source)

	at java.awt.EventDispatchThread.pumpEvents(Unknown Source)

	at java.awt.EventDispatchThread.pumpEvents(Unknown Source)

	at java.awt.EventDispatchThread.run(Unknown Source)

References

Referenced by:
← User Story (#8141): sprint10-insight-backlog

Change History (6)

comment:1 Changed 12 years ago by jburel

Component changed from from QA to Insight
Milestone changed from Unscheduled to OMERO-Beta4.4
Priority changed from minor to major
Remaining Time set to 0.2
Sprint set to 2012-03-13 (10)

Improve error handling when out of memory.

comment:2 Changed 12 years ago by jburel

Remaining Time changed from 0.2 to 0.3
Status changed from new to accepted

comment:3 Changed 12 years ago by jburel

Did you analyze one plane at a time?

comment:4 Changed 12 years ago by jburel

Remaining Time changed from 0.3 to 0
Status changed from accepted to closed

comment:5 Changed 12 years ago by jburel <j.burel@…>

(In [974187cc45ba5858840e6de4036a614330a417c7/ome.git] on branch develop) Initial re-work of the shape analyzer (see #8150)

comment:6 Changed 12 years ago by jburel <j.burel@…>

(In [ee228008774f498d95a0f329b439e64f04b12812/ome.git] on branch develop) Error handling shapes analysis. (see #8150)

Clear map and improve error handling.

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