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Task #12170 (closed)

Opened 10 years ago

Closed 9 years ago

Last modified 9 years ago

Bug : Reading ims files (incorrect channel number)

Reported by:	bramalingam	Owned by:	mlinkert
Priority:	minor	Milestone:	5.1.1
Component:	Bio-Formats	Version:	5.0.1
Keywords:	n.a.	Cc:	l.maier@…
Resources:	n.a.	Referenced By:	n.a.
References:	n.a.	Remaining Time:	0.0d
Sprint:	n.a.

Description

https://www.openmicroscopy.org/qa2/qa/feedback/8019/

The error was reproduced during an import on insight as well.
Has only one channel, checked via matlab as well. Bioformats reads the Z-sections correctly but fails to read the channel information as suggested by the user.

References

Change History (3)

comment:1 Changed 9 years ago by mlinkert

Component changed from General to Bio-Formats
Milestone changed from Unscheduled to 5.1.1

Moving to 5.1.1 for triage.

comment:2 Changed 9 years ago by mlinkert

Resolution set to fixed
Status changed from new to closed

Fixed with: https://github.com/openmicroscopy/bioformats/pull/1713

comment:3 Changed 9 years ago by Melissa Linkert <melissa@…>

Remaining Time set to 0

(In [e1411b59bcaceb72007aedc058c879dc4e4c1837/bioformats.git] on branch develop) Imaris HDF: fix SizeC if channels are stored in reverse order

Fixes #12170.

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