Task #11486 (new)
Opened 11 years ago
Last modified 8 years ago
RFE: viewing orphaned samples in Insight
Reported by: | mtbcarroll | Owned by: | jburel |
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Priority: | minor | Milestone: | Unscheduled |
Component: | Insight | Version: | 4.4.8 |
Keywords: | BACKPORT-4.4 | Cc: | ux@…, cxallan |
Resources: | n.a. | Referenced By: | n.a. |
References: | n.a. | Remaining Time: | n.a. |
Sprint: | n.a. |
Description
I have the suspicion that if I have a plate with both some well samples from runs and some "orphaned" samples not from runs, clicking on the plate (not run) in Insight doesn't show me in the data browser the samples that aren't in a run. Unfortunately, I don't have any good test data handy for confirming this.
Change History (12)
comment:1 Changed 11 years ago by wmoore
comment:2 Changed 11 years ago by mtbcarroll
If it wouldn't be too much trouble, that would be great. (Also, I don't know if Andrew can easily construct something suitable.)
comment:3 Changed 11 years ago by jamoore
- Cc cxallan added
- Milestone changed from Unscheduled to OMERO-4.4.10
Moving for closer review with the rest of the dangling 4.4 work.
comment:4 Changed 10 years ago by jburel
- Milestone changed from 5.1.0 to 5.1.0-m4
comment:5 Changed 9 years ago by jburel
Will: did you generate some sample files to test that ticket?
comment:6 Changed 9 years ago by wmoore
No - I haven't. Maybe we shouldn't try fixing this "BUG" unless we know of some data that causes the bug?
comment:7 Changed 9 years ago by mtbcarroll
Just import a regular plate with runs and null one of the samples' plate acquisition property in the DB?
comment:8 Changed 9 years ago by mtbcarroll
I constructed one: on trout-merge see user-5 read-write-1, screen "Trac #11486". The samples in the first eight wells are not in a run, the other half are. Insight won't show me the first half at all, Web shows me all of them but all in the run.
mtbc@ls28101:~/src/openmicroscopy$ omero hql "SELECT s.id, w.column FROM Well w, WellSample s WHERE w.plate = 1465 AND s.well = w AND s.plateAcquisition IS NULL" Using session 05db7b76-cfa7-4158-bc2c-5095ccadce1b (user-5@trout.openmicroscopy.org:4064). Idle timeout: 10.0 min. Current group: read-write-1 # | Col1 | Col2 ---+-------+------ 0 | 14699 | 2 1 | 14696 | 5 2 | 14694 | 3 3 | 14692 | 4 4 | 14691 | 6 5 | 14689 | 1 6 | 14688 | 7 7 | 14701 | 0 (8 rows) To see details for object, enter line number. To move ahead one page, enter 'p' To re-display list, enter 'r'. To quit, enter 'q' or just enter. q mtbc@ls28101:~/src/openmicroscopy$ omero hql "SELECT s.id, w.column FROM Well w, WellSample s WHERE w.plate = 1465 AND s.well = w AND s.plateAcquisition IS NOT NULL" Using session 05db7b76-cfa7-4158-bc2c-5095ccadce1b (user-5@trout.openmicroscopy.org:4064). Idle timeout: 10.0 min. Current group: read-write-1 # | Col1 | Col2 ---+-------+------ 0 | 14700 | 9 1 | 14698 | 8 2 | 14697 | 14 3 | 14695 | 15 4 | 14693 | 10 5 | 14690 | 13 6 | 14687 | 11 7 | 14686 | 12 (8 rows) To see details for object, enter line number. To move ahead one page, enter 'p' To re-display list, enter 'r'. To quit, enter 'q' or just enter. q
comment:9 Changed 9 years ago by jamoore
Referencing ticket #11752 has changed sprint.
comment:10 Changed 9 years ago by jamoore
Referencing ticket #11752 has changed sprint.
comment:11 Changed 9 years ago by jamoore
- Milestone changed from 5.1.4 to OMERO-5.1.4
Splitting 5.1.4 due to milestone decoupling
comment:12 Changed 8 years ago by jamoore
- Milestone changed from 5.x to Unscheduled
One way to create some test data would be to modify the Dataset_To_Plate.py script to use an existing Plate, instead of creating one.
This adds wells & images to a Plate without creating a Acquisition/Run?. I could have a go at this if you want?