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Task #8589 (closed)

Opened 12 years ago

Closed 12 years ago

BUG:Feedback 4305 ND2Handler

Reported by: omero-qa Owned by: mlinkert
Priority: major Milestone: OMERO-4.4
Component: Bio-Formats Version: n.a.
Keywords: n.a. Cc: CJW@…
Resources: n.a. Referenced By: n.a.
References: n.a. Remaining Time: 0.0d
Sprint: 2012-06-05 (16)

Description

​http://qa.openmicroscopy.org.uk/qa/feedback/4305/

Comment: Importing a Nikon nd2 file, with insight

java.lang.ArithmeticException: / by zero
	at loci.formats.in.ND2Handler.startElement(ND2Handler.java:322)
	at com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.startElement(AbstractSAXParser.java:501)
	at com.sun.org.apache.xerces.internal.parsers.AbstractXMLDocumentParser.emptyElement(AbstractXMLDocumentParser.java:179)
	at com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl.scanStartElement(XMLDocumentFragmentScannerImpl.java:1343)
	at com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl$FragmentContentDriver.next(XMLDocumentFragmentScannerImpl.java:2755)
	at com.sun.org.apache.xerces.internal.impl.XMLDocumentScannerImpl.next(XMLDocumentScannerImpl.java:648)
	at com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl.scanDocument(XMLDocumentFragmentScannerImpl.java:511)
	at com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(XML11Configuration.java:808)
	at com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(XML11Configuration.java:737)
	at com.sun.org.apache.xerces.internal.parsers.XMLParser.parse(XMLParser.java:119)
	at com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.parse(AbstractSAXParser.java:1205)
	at com.sun.org.apache.xerces.internal.jaxp.SAXParserImpl$JAXPSAXParser.parse(SAXParserImpl.java:522)
	at javax.xml.parsers.SAXParser.parse(SAXParser.java:395)
	at javax.xml.parsers.SAXParser.parse(SAXParser.java:198)
	at loci.common.xml.XMLTools.parseXML(XMLTools.java:315)
	at loci.common.xml.XMLTools.parseXML(XMLTools.java:301)
	at loci.common.xml.XMLTools.parseXML(XMLTools.java:280)
	at loci.formats.in.NativeND2Reader.initFile(NativeND2Reader.java:419)
	at loci.formats.FormatReader.setId(FormatReader.java:1072)
	at loci.formats.DelegateReader.setId(DelegateReader.java:232)
	at loci.formats.ImageReader.setId(ImageReader.java:677)
	at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:488)
	at loci.formats.ChannelFiller.setId(ChannelFiller.java:249)
	at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:488)
	at loci.formats.ChannelSeparator.setId(ChannelSeparator.java:257)
	at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:488)
	at ome.formats.importer.ImportLibrary.open(ImportLibrary.java:312)
	at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:488)
	at org.openmicroscopy.shoola.env.data.OMEROGateway.importImage(OMEROGateway.java:6402)
	at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.importFile(OmeroImageServiceImpl.java:1228)
	at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.importFile(ImagesImporter.java:85)
	at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.access$000(ImagesImporter.java:54)
	at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter$1.doCall(ImagesImporter.java:111)
	at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144)
	at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226)
	at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126)
	at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165)
	at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:274)
	at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91)
	at java.lang.Thread.run(Thread.java:680)

Change History (6)

comment:1 Changed 12 years ago by mlinkert

  • Component changed from from QA to Bio-Formats
  • Milestone changed from Unscheduled to OMERO-Beta4.4
  • Priority changed from minor to major
  • Sprint set to 2012-04-24 (13)

comment:2 Changed 12 years ago by jburel

  • Sprint changed from 2012-04-24 (13) to 2012-05-08 (14)

Moved from sprint 2012-04-24 (13)

comment:3 Changed 12 years ago by jburel

  • Sprint changed from 2012-05-08 (14) to 2012-05-22 (15)

Moved from sprint 2012-05-08 (14)

comment:4 Changed 12 years ago by mlinkert

  • Remaining Time set to 0.001
  • Status changed from new to accepted

Pull request opened: ​https://github.com/openmicroscopy/bioformats/pull/68

This means that the work is basically done, but a new build is not yet available.

comment:5 Changed 12 years ago by jburel

  • Sprint changed from 2012-05-22 (15) to 2012-06-05 (16)

Moved from sprint 2012-05-22 (15)

comment:6 Changed 12 years ago by mlinkert

  • Remaining Time changed from 0.001 to 0
  • Resolution set to fixed
  • Status changed from accepted to closed
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