Task #7286 (closed)
Opened 12 years ago
Closed 12 years ago
Bug: OOM on 400 setIds from CLI importer
Reported by: | jamoore | Owned by: | cxallan |
---|---|---|---|
Priority: | minor | Milestone: | OMERO-4.4 |
Component: | Client | Version: | n.a. |
Keywords: | n.a. | Cc: | bhcho@…, mlinkert, jburel, cxallan |
Resources: | n.a. | Referenced By: | n.a. |
References: | n.a. | Remaining Time: | 0.0d |
Sprint: | 2012-01-17 (6) |
Description
OOM thrown very early during import:
Created session 0a7a9e0a-c2fa-47ae-a428-18d803c41848 (performance@localhost). Idle timeout: 10.0 min. Current group: Researchers 2011-11-19 21:00:05,783 0 [ main] INFO ome.formats.importer.ImportConfig - OMERO Version: Beta4.2.1-r8614-Beta4.2-b41 2011-11-19 21:00:09,166 3383 [ main] WARN ome.system.UpgradeCheck - UPGRADE AVAILABLE:Please upgrade to Beta-4.3.3 See http://trac.openmicrosc$ 2011-11-19 21:00:09,175 3392 [ main] INFO ome.formats.importer.ImportConfig - Bioformats version: 4.2.1-DEV revision: 7178 date: 9 November 2010 2011-11-19 21:00:09,187 3404 [ main] INFO formats.importer.cli.CommandLineImporter - Log levels -- Bio-Formats: ERROR OMERO.importer: INFO 2011-11-19 21:00:09,571 3788 [ main] INFO ome.formats.importer.ImportCandidates - Depth: 4 Metadata Level: MINIMUM 2011-11-19 21:00:22,475 16692 [ main] INFO ome.formats.importer.ImportCandidates - 400 file(s) parsed into 400 group(s) with 400 call(s) to setId in 12311ms.$ 2011-11-19 21:00:22,542 16759 [ main] INFO ome.formats.OMEROMetadataStoreClient - Attempting initial SSL connection to localhost:4064 2011-11-19 21:00:23,226 17443 [ main] INFO ome.formats.OMEROMetadataStoreClient - Insecure connection requested, falling back 2011-11-19 21:00:23,258 17475 [ main] ERROR formats.importer.cli.CommandLineImporter - Error during import process. java.lang.OutOfMemoryError: unable to create new native thread at java.lang.Thread.start0(Native Method) at java.lang.Thread.start(Thread.java:597) at IceInternal.ThreadPool.<init>(ThreadPool.java:91) at Ice.ObjectAdapterI.<init>(ObjectAdapterI.java:823) at IceInternal.ObjectAdapterFactory.createObjectAdapter(ObjectAdapterFactory.java:183) at Ice.CommunicatorI.createObjectAdapter(CommunicatorI.java:71)
see: https://www.openmicroscopy.org/community/viewtopic.php?f=6&t=895
Change History (2)
comment:1 Changed 12 years ago by cxallan
- Owner set to cxallan
- Remaining Time set to 0.1
- Sprint set to 2012-01-17 (6)
- Status changed from new to accepted
comment:2 Changed 12 years ago by cxallan
- Remaining Time changed from 0.1 to 0
- Resolution set to wontfix
- Status changed from accepted to closed
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Closing this as wontfix as it is a very old version of OMERO (4.2.1), we do not have the files in question and the exception itself java.lang.OutOfMemoryError: unable to create new native thread implies a resource starvation on the system as well.