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Task #6286 (closed)

Opened 13 years ago

Closed 13 years ago

BUG:Feedback 3862

Reported by:	omero-qa	Owned by:	mlinkert
Priority:	minor	Milestone:	Unscheduled
Component:	from QA	Version:	n.a.
Keywords:	n.a.	Cc:	peter.ciesielski@…
Resources:	n.a.	Referenced By:	n.a.
References:	n.a.	Remaining Time:	n.a.
Sprint:	n.a.

Description

http://qa.openmicroscopy.org.uk/qa/feedback/3862/

Comment: These errors caused failures on ~1200 images, but I'm not sure why because at least 100 imported successfully during the same session. Also, I unchecked all but 2 in the "import errors" tab of the importer so that you would just recieve feedback from representative errors rather than recieving the same repetitive error message from all the failures, but I'm not sure the check function works though because this form is still showing that you will recieve files for all 238 failures (not just the ones I checked).

java.lang.NullPointerException
	at loci.formats.in.FEITiffReader.initStandardMetadata(FEITiffReader.java:129)
	at loci.formats.in.BaseTiffReader.initMetadata(BaseTiffReader.java:74)
	at loci.formats.in.BaseTiffReader.initFile(BaseTiffReader.java:482)
	at loci.formats.FormatReader.setId(FormatReader.java:1058)
	at loci.formats.ImageReader.setId(ImageReader.java:650)
	at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:480)
	at loci.formats.ChannelFiller.setId(ChannelFiller.java:244)
	at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:480)
	at loci.formats.ChannelSeparator.setId(ChannelSeparator.java:238)
	at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:480)
	at ome.formats.importer.ImportLibrary.open(ImportLibrary.java:245)
	at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:483)
	at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:433)
	at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:376)
	at ome.formats.importer.gui.ImportHandler.importImages(ImportHandler.java:216)
	at ome.formats.importer.gui.ImportHandler.access$100(ImportHandler.java:59)
	at ome.formats.importer.gui.ImportHandler$2.run(ImportHandler.java:134)
	at java.util.concurrent.Executors$RunnableAdapter.call(Unknown Source)
	at java.util.concurrent.FutureTask$Sync.innerRun(Unknown Source)
	at java.util.concurrent.FutureTask.run(Unknown Source)
	at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.access$301(Unknown Source)
	at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(Unknown Source)
	at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(Unknown Source)
	at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source)
	at java.lang.Thread.run(Unknown Source)

References

Change History (1)

comment:1 Changed 13 years ago by mlinkert

Resolution set to fixed
Status changed from new to closed

This was fixed in [954caf05cf5a3e43764137d9bb1f425b99b9aad1/bioformats.git] and [3b16bd1f7af339b46e08ffc39b700f6fb2d2f3ef/ome.git].

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