Task #5396 (accepted)
Parse ROIs from .vsi files
| Reported by: | mlinkert | Owned by: | rleigh |
|---|---|---|---|
| Priority: | major | Milestone: | Unscheduled |
| Component: | Bio-Formats | Keywords: | n.a. |
| Cc: | smithd@… | Remaining Time: | 1.0d |
| Sprint: | n.a. | Resources: | n.a. |
| References: | n.a. | Referenced By: | n.a. |
Description
See for example cellsens/melissa/SW...GOLD copy.vsi, which has 3 ROIs:
- "ROI 1", a red rectangle with line width of 5 and upper left corner at approximately (901, 931)
- "ROI 2", a green circle of radius ~510 with center at ~(7330, 5190)
- "ROI 3", a yellow polygon (roughly trapezoidal) in the upper right corner. It also has a different font from the others.
References
| Referenced by: | |||
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Change History
comment:2 Changed 23 months ago by mlinkert
- Sprint set to 2011-07-21 (1)
- Remaining Time set to 1
We have now received sufficient documentation to solve this problem.
comment:3 Changed 22 months ago by cxallan
- Sprint changed from 2011-07-21 (1) to 2011-08-04 (2)
Moved from sprint 2011-07-21 (1)
comment:4 Changed 22 months ago by cxallan
- Sprint changed from 2011-08-04 (2) to 2011-08-18 (3)
Moved from sprint 2011-08-04 (2)
comment:5 Changed 22 months ago by Melissa Linkert <melissa@…>
(In [12ca71392c2763d1a1535f03d6e98153b0c65757/bioformats.git]) Finally implemented basic VSI tag parsing.
This is by no means comprehensive, but it at least lets us read out the dimension ordering so that pixel data is now correct. It's also the foundation for more advanced metadata parsing, e.g. ROIs.
comment:6 Changed 22 months ago by Melissa Linkert <melissa@…>
(In [12ca71392c2763d1a1535f03d6e98153b0c65757/bioformats.git]) Finally implemented basic VSI tag parsing.
This is by no means comprehensive, but it at least lets us read out the dimension ordering so that pixel data is now correct. It's also the foundation for more advanced metadata parsing, e.g. ROIs.
comment:7 Changed 22 months ago by Melissa Linkert <melissa@…>
(In [7864934e953ad5acd1e9eb969370cdd333c81347/bioformats.git]) Finally implemented basic VSI tag parsing.
This is by no means comprehensive, but it at least lets us read out the dimension ordering so that pixel data is now correct. It's also the foundation for more advanced metadata parsing, e.g. ROIs.
Closes #6280, see #5396. (cherry picked from commit 12ca71392c2763d1a1535f03d6e98153b0c65757)
comment:8 Changed 22 months ago by Melissa Linkert <melissa@…>
(In [7864934e953ad5acd1e9eb969370cdd333c81347/bioformats.git]) Finally implemented basic VSI tag parsing.
This is by no means comprehensive, but it at least lets us read out the dimension ordering so that pixel data is now correct. It's also the foundation for more advanced metadata parsing, e.g. ROIs.
Closes #6280, see #5396. (cherry picked from commit 12ca71392c2763d1a1535f03d6e98153b0c65757)
comment:11 Changed 21 months ago by mlinkert
- Sprint 2011-09-01 (4) deleted
- Milestone changed from OMERO-Beta4.3.2 to Unscheduled
comment:13 Changed 13 months ago by mlinkert
- Milestone changed from OMERO-Beta4.4 to Unscheduled
Best to look at this as part of the upcoming ROI work, rather than trying to squeeze it in before 4.4.
comment:14 Changed 11 months ago by jburel
Referencing ticket #3215 has changed sprint.
comment:16 Changed 3 weeks ago by jamoore
Referencing ticket #3215 has changed sprint.
