Warning: Can't synchronize with repository "(default)" (/home/git/ome.git does not appear to be a Git repository.). Look in the Trac log for more information.
Notice: In order to edit this ticket you need to be either: a Product Owner, The owner or the reporter of the ticket, or, in case of a Task not yet assigned, a team_member"

Task #5370 (closed)

Opened 13 years ago

Closed 13 years ago

BUG: Crash on Attach to many-images

Reported by: ajpatterson Owned by: jburel
Priority: major Milestone: OMERO-Beta4.3
Component: General Version: n.a.
Keywords: n.a. Cc:
Resources: n.a. Referenced By: n.a.
References: n.a. Remaining Time: 0.0d
Sprint: 2011-06-02 (13)

Description (last modified by ajpatterson)

When you attach a file (in this case a .xlsx) to a number of selected images you get a crash.

Change History (8)

comment:1 Changed 13 years ago by ajpatterson 

java.lang.Exception: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data. 
Cannot update the object.
	at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:875)
	at org.openmicroscopy.shoola.env.data.OMEROGateway.createObject(OMEROGateway.java:2775)
	at org.openmicroscopy.shoola.env.data.OmeroMetadataServiceImpl.linkAnnotation(OmeroMetadataServiceImpl.java:470)
	at org.openmicroscopy.shoola.env.data.OmeroMetadataServiceImpl.saveData(OmeroMetadataServiceImpl.java:1006)
	at org.openmicroscopy.shoola.env.data.views.calls.StructuredAnnotationSaver$1.doCall(StructuredAnnotationSaver.java:90)
	at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144)
	at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226)
	at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126)
	at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165)
	at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:274)
	at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91)
	at java.lang.Thread.run(Thread.java:680)
Caused by: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data. 
Cannot update the object.
	at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:875)
	at org.openmicroscopy.shoola.env.data.OMEROGateway.saveAndReturnObject(OMEROGateway.java:2874)
	at org.openmicroscopy.shoola.env.data.OMEROGateway.createObject(OMEROGateway.java:2772)
	... 10 more
Caused by: omero.ValidationException
    serverStackTrace = "ome.conditions.ValidationException: could not insert: [ome.model.annotations.ImageAnnotationLink]; SQL [insert into imageannotationlink (child, creation_id, external_id, group_id, owner_id, permissions, update_id, parent, version, id) values (?, ?, ?, ?, ?, ?, ?, ?, ?, ?)]; constraint [imageannotationlink_parent_key]; nested exception is org.hibernate.exception.ConstraintViolationException: could not insert: [ome.model.annotations.ImageAnnotationLink]
                        	at org.springframework.orm.hibernate3.SessionFactoryUtils.convertHibernateAccessException(SessionFactoryUtils.java:637)
                        	at org.springframework.orm.hibernate3.HibernateAccessor.convertHibernateAccessException(HibernateAccessor.java:412)
                        	at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:117)
                        	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
                        	at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108)
                        	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
                        	at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:231)
                        	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
                        	at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:111)
                        	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
                        	at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202)
                        	at $Proxy81.saveAndReturnObject(Unknown Source)
                        	at sun.reflect.GeneratedMethodAccessor1342.invoke(Unknown Source)
                        	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
                        	at java.lang.reflect.Method.invoke(Method.java:597)
                        	at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307)
                        	at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183)
                        	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150)
                        	at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:83)
                        	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
                        	at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43)
                        	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
                        	at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202)
                        	at $Proxy81.saveAndReturnObject(Unknown Source)
                        	at sun.reflect.GeneratedMethodAccessor1704.invoke(Unknown Source)
                        	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
                        	at java.lang.reflect.Method.invoke(Method.java:597)
                        	at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:179)
                        	at ome.services.throttling.Callback.run(Callback.java:56)
                        	at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56)
                        	at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:136)
                        	at ome.services.blitz.impl.UpdateI.saveAndReturnObject_async(UpdateI.java:64)
                        	at omero.api._IUpdateTie.saveAndReturnObject_async(_IUpdateTie.java:92)
                        	at omero.api._IUpdateDisp.___saveAndReturnObject(_IUpdateDisp.java:185)
                        	at omero.api._IUpdateDisp.__dispatch(_IUpdateDisp.java:365)
                        	at IceInternal.Incoming.invoke(Incoming.java:159)
                        	at Ice.ConnectionI.invokeAll(ConnectionI.java:2037)
                        	at Ice.ConnectionI.message(ConnectionI.java:972)
                        	at IceInternal.ThreadPool.run(ThreadPool.java:577)
                        	at IceInternal.ThreadPool.access$100(ThreadPool.java:12)
                        	at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971)
                        "
    serverExceptionClass = "ome.conditions.ValidationException"
    message = "could not insert: [ome.model.annotations.ImageAnnotationLink]; SQL [insert into imageannotationlink (child, creation_id, external_id, group_id, owner_id, permissions, update_id, parent, version, id) values (?, ?, ?, ?, ?, ?, ?, ?, ?, ?)]; constraint [imageannotationlink_parent_key]; nested exception is org.hibernate.exception.ConstraintViolationException: could not insert: [ome.model.annotations.ImageAnnotationLink]"
	at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
	at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39)
	at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27)
	at java.lang.reflect.Constructor.newInstance(Constructor.java:513)
	at java.lang.Class.newInstance0(Class.java:355)
	at java.lang.Class.newInstance(Class.java:308)
	at IceInternal.BasicStream$DynamicUserExceptionFactory.createAndThrow(BasicStream.java:2243)
	at IceInternal.BasicStream.throwException(BasicStream.java:1632)
	at IceInternal.Outgoing.throwUserException(Outgoing.java:442)
	at omero.api._IUpdateDelM.saveAndReturnObject(_IUpdateDelM.java:248)
	at omero.api.IUpdatePrxHelper.saveAndReturnObject(IUpdatePrxHelper.java:322)
	at omero.api.IUpdatePrxHelper.saveAndReturnObject(IUpdatePrxHelper.java:294)
	at org.openmicroscopy.shoola.env.data.OMEROGateway.saveAndReturnObject(OMEROGateway.java:2871)
	... 11 more

	at org.openmicroscopy.shoola.env.ui.UserNotifierImpl.showErrorDialog(UserNotifierImpl.java:183)
	at org.openmicroscopy.shoola.env.ui.UserNotifierImpl.notifyError(UserNotifierImpl.java:272)
	at org.openmicroscopy.shoola.env.ui.UserNotifierImpl.notifyError(UserNotifierImpl.java:242)
	at org.openmicroscopy.shoola.agents.metadata.MetadataLoader.handleException(MetadataLoader.java:154)
	at org.openmicroscopy.shoola.env.data.events.DSCallAdapter.eventFired(DSCallAdapter.java:84)
	at org.openmicroscopy.shoola.env.data.views.BatchCallMonitor$1.run(BatchCallMonitor.java:124)
	at java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:209)
	at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:678)
	at java.awt.EventQueue.access$000(EventQueue.java:86)
	at java.awt.EventQueue$1.run(EventQueue.java:639)
	at java.awt.EventQueue$1.run(EventQueue.java:637)
	at java.security.AccessController.doPrivileged(Native Method)
	at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
	at java.awt.EventQueue.dispatchEvent(EventQueue.java:648)
	at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:296)
	at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:211)
	at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:201)
	at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:196)
	at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:188)
	at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)

comment:2 Changed 13 years ago by ajpatterson

Crash is not repeatable.

comment:3 Changed 13 years ago by jburel

  • Owner set to jburel
  • Sprint set to 2011-06-02 (13)

Need to write a test

comment:4 Changed 13 years ago by jburel

  • Remaining Time set to 0.25

comment:5 Changed 13 years ago by jburel

  • Status changed from new to accepted

comment:6 Changed 13 years ago by ajpatterson

  • Description modified (diff)

comment:7 Changed 13 years ago by ajpatterson

  • Summary changed from BUG: Crash on Attach to many-files to BUG: Crash on Attach to many-images

comment:8 Changed 13 years ago by jburel <j.burel@…>

  • Remaining Time changed from 0.25 to 0
  • Resolution set to fixed
  • Status changed from accepted to closed

(In [67add1dfa9b6f891cf0f10c1a4b9aad0f750e7b8/ome.git] on branch develop) Add test for annotation added to several images (close #5370)

Note: See TracTickets for help on using tickets. You may also have a look at Agilo extensions to the ticket.

1.3.13-PRO © 2008-2011 Agilo Software all rights reserved (this page was served in: 0.71873 sec.)

© 2000-2014 University of Dundee & Open Microscopy Environment. Creative Commons Attribution 3.0 Unported License
OME source code is available under the GNU General public license or through commercial license from Glencoe Software

We're Hiring!