User Story #4271 (accepted)
Opened 13 years ago
Last modified 13 years ago
Batch annotation import
| Reported by: | cxallan | Owned by: | |
|---|---|---|---|
| Priority: | minor | Milestone: | Unscheduled |
| Component: | General | Keywords: | n.a. |
| Cc: | jburel | Story Points: | n.a. |
| Sprint: | n.a. | Importance: | n.a. |
| Total Remaining Time: | 0.0d | Estimated Remaining Time: | n.a. |
Description (last modified by wmoore)
Overarching story for the import of batch annotations. The basic initial workflow to be investigated is:
- Python script takes Plate, Project or Dataset input container and CSV file
- CSV headers are parsed, locating key referential columns such as "plate", "well", "column", "row" or "image"
- An OmeroTables instance is created with the source annotation data and associated with the target container (namespace: openmicroscopy.org/omero/batch_annotation)
Additional functionality to be explored:
- Annotation templates which use OmeroScripts and the DeleteSpecification of wiki:Delete to specify OMERO model entities and fields to update based on the batch annotation source.
- OmeroScripts integrations with OMERO.insight to allow the upload of an attachment and subsequent processing of the batch annotation file in a completely user driven manner.
- Batch Annotation on Import - #1797.
Change History (3)
comment:1 Changed 13 years ago by jburel
- Cc jburel added
comment:2 Changed 13 years ago by agilo
- Status changed from new to accepted
comment:3 Changed 13 years ago by wmoore
- Description modified (diff)
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Updated status, related task in progress