Task #4083 (closed)
Opened 13 years ago
Closed 13 years ago
Support for Volocity format
Reported by: | curtis | Owned by: | mlinkert |
---|---|---|---|
Priority: | major | Milestone: | OMERO-Beta4.3 |
Component: | Bio-Formats | Version: | n.a. |
Keywords: | n.a. | Cc: | tjc@…, andrew.vaughan@…, alexander.tournier@…, ruben.munoz@… |
Resources: | n.a. | Referenced By: | n.a. |
References: | n.a. | Remaining Time: | 0.0d |
Sprint: | 2011-04-07 (9) |
Description
There are several file types involved in the Volocity database structure, including .mvd2, .acff, .atsf, .aiix, .aisf, .dat, and possibly others. There is also a Volocity flavor of TIFF, with plain-text metadata in the header, that we should verify is parsed and converted correctly. See the readmes in data/volocity for more details.
Change History (24)
comment:1 Changed 13 years ago by jmoore
comment:2 Changed 13 years ago by mlinkert
- Cc ruben.munoz@… added
comment:3 Changed 13 years ago by mlinkert
- Milestone changed from OME-5.0 to OMERO-Beta4.3
- Sprint set to 2011-04-07 (9)
comment:4 Changed 13 years ago by mlinkert
- Remaining Time set to 10
comment:5 Changed 13 years ago by mlinkert
- Status changed from new to accepted
comment:6 Changed 13 years ago by mlinkert
- Remaining Time changed from 10 to 9
comment:7 Changed 13 years ago by mlinkert
- Remaining Time changed from 9 to 8
comment:8 Changed 13 years ago by mlinkert
- Remaining Time changed from 8 to 7
comment:9 Changed 13 years ago by mlinkert
- Remaining Time changed from 7 to 6
comment:10 Changed 13 years ago by mlinkert
- Remaining Time changed from 6 to 5
comment:11 Changed 13 years ago by donald <donald@…>
- Remaining Time changed from 5 to 0
- Resolution set to fixed
- Status changed from accepted to closed
(In [0200337cfed20bf79855b8cf0e6ea869d81dc171/ome.git] on branch develop) Add Heatmap, histogram charting using processing (close #4083, #4263)
update classpath
comment:12 Changed 13 years ago by dzmacdonald
- Resolution fixed deleted
- Status changed from closed to reopened
comment:13 Changed 13 years ago by mlinkert
- Remaining Time changed from 0 to 5
comment:14 Changed 13 years ago by mlinkert
- Remaining Time changed from 5 to 4
comment:15 Changed 13 years ago by mlinkert
- Remaining Time changed from 4 to 3
comment:16 Changed 13 years ago by mlinkert
- Remaining Time changed from 3 to 2
comment:17 Changed 13 years ago by Melissa Linkert <melissa@…>
(In [663157d9c8da7aa829693d91ce26158d5abf8683/bioformats.git]) Added 'metakit' component for reading database files.
None of the methods are implemented yet, though. See #4083.
comment:18 Changed 13 years ago by Melissa Linkert <melissa@…>
- Remaining Time changed from 2 to 0
- Resolution set to fixed
- Status changed from reopened to closed
(In [dde284b3d21c12f45fafd6e8f997bd4f6f842a93/bioformats.git]) Merge commit 'origin/volocity' into develop
Conflicts:
components/bio-formats/src/loci/formats/in/CellWorxReader.java
components/bio-formats/src/loci/formats/readers.txt
components/native/bf-itk-jni/CMakeLists.txt
components/test-suite/src/loci/tests/testng/FormatReaderTest.java
This closes #4083. And there was much rejoicing.
comment:19 Changed 13 years ago by Melissa Linkert <melissa@…>
(In [663157d9c8da7aa829693d91ce26158d5abf8683/bioformats.git]) Added 'metakit' component for reading database files.
None of the methods are implemented yet, though. See #4083.
comment:20 Changed 13 years ago by Melissa Linkert <melissa@…>
(In [dde284b3d21c12f45fafd6e8f997bd4f6f842a93/bioformats.git]) Merge commit 'origin/volocity' into develop
Conflicts:
components/bio-formats/src/loci/formats/in/CellWorxReader.java
components/bio-formats/src/loci/formats/readers.txt
components/native/bf-itk-jni/CMakeLists.txt
components/test-suite/src/loci/tests/testng/FormatReaderTest.java
This closes #4083. And there was much rejoicing.
comment:21 Changed 13 years ago by Melissa Linkert <melissa@…>
(In [2fd366fb42eb8e3b1722213f0da3f5e5af5dd196/bioformats.git]) Added 'metakit' component for reading database files.
None of the methods are implemented yet, though. See #4083.
(cherry picked from commit 663157d9c8da7aa829693d91ce26158d5abf8683)
comment:22 Changed 13 years ago by Melissa Linkert <melissa@…>
(In [2fd366fb42eb8e3b1722213f0da3f5e5af5dd196/bioformats.git]) Added 'metakit' component for reading database files.
None of the methods are implemented yet, though. See #4083.
(cherry picked from commit 663157d9c8da7aa829693d91ce26158d5abf8683)
comment:23 Changed 13 years ago by Melissa Linkert <melissa@…>
(In [bfc11ec6c8876f8a7b3131c67b06539d97e71d6a/bioformats.git]) Added 'metakit' component for reading database files.
None of the methods are implemented yet, though. See #4083.
(cherry picked from commit 663157d9c8da7aa829693d91ce26158d5abf8683)
comment:24 Changed 13 years ago by Melissa Linkert <melissa@…>
(In [bfc11ec6c8876f8a7b3131c67b06539d97e71d6a/bioformats.git]) Added 'metakit' component for reading database files.
None of the methods are implemented yet, though. See #4083.
(cherry picked from commit 663157d9c8da7aa829693d91ce26158d5abf8683)
imported from bio-formats:#55