Task #12367 (closed)
Opened 10 years ago
Closed 9 years ago
Bug: .ndpi files larger than 4GB are not supported
| Reported by: | mlinkert | Owned by: | mlinkert |
|---|---|---|---|
| Priority: | major | Milestone: | 5.1.0-m3 |
| Component: | Bio-Formats | Version: | 5.0.2 |
| Keywords: | n.a. | Cc: | kkjaergaard@… |
| Resources: | n.a. | Referenced By: | n.a. |
| References: | n.a. | Remaining Time: | 0.0d |
| Sprint: | n.a. |
Description
See http://lists.openmicroscopy.org.uk/pipermail/ome-users/2014-June/004487.html and files in hamamatsu/kristian/. Files larger than 4GB cannot be read as they do not follow the BigTIFF standard. Likely this means detecting the file size early in setId, and performing an offset correction as is done for Zeiss LSM files.
Change History (4)
comment:1 Changed 10 years ago by mlinkert
- Resolution set to fixed
- Status changed from new to closed
comment:2 Changed 10 years ago by Melissa Linkert <melissa@…>
- Remaining Time set to 0
(In [4cfc48c2f504d15c31bb745f82ce64453d811fd1/bioformats.git] on branch develop) TIFF: correctly account for fakeBigTiff when reading IFD entries
Fixes #12367.
comment:3 Changed 10 years ago by mlinkert
- Milestone changed from 5.0.3 to 5.0.4
- Resolution fixed deleted
- Status changed from closed to reopened
Reopening for 5.0.4. Most of the files referenced in the ome-users thread should now open, but 69.ndpi has lingering issues due to the markers being incorrect.
comment:4 Changed 9 years ago by mlinkert
- Resolution set to fixed
- Status changed from reopened to closed
PR opened for 5.1.0: https://github.com/openmicroscopy/bioformats/pull/1465
PR opened for 5.0.3: https://github.com/openmicroscopy/bioformats/pull/1205