Task #12267 (closed)
Bug: ImageJ plugin importer virtual stacks don't interact well with composite colour
| Reported by: | rleigh | Owned by: | mlinkert |
|---|---|---|---|
| Priority: | minor | Milestone: | 5.1.2 |
| Component: | Bio-Formats | Version: | 5.0.1 |
| Keywords: | n.a. | Cc: | l.maier@… |
| Resources: | n.a. | Referenced By: | n.a. |
| References: | n.a. | Remaining Time: | 0.0d |
| Sprint: | n.a. |
Description (last modified by rleigh)
/ome/team/rleigh/lmaier-ij-composite.zip contains a sample CZI image and macro which demonstrate the problem.
Note that I can't reproduce this through the UI: it seems to only take effect when running via a macro.
Non-virtual stack: colour and composite images look fine.
Virtual stack: initial composite view changes with channel rather than being the same whichever channel is selected; it also seems to contain a subset of the channels rendered in odd colours e.g. dapi->cyan (maybe the same channel is rendered twice in blue and green?) However, if I switch to colour mode all channels are coloured correctly, and if I then switch back to composite it's again back to normal.
Note original mailing list threads archived here:
http://lists.openmicroscopy.org.uk/pipermail/ome-users/2014-April/004348.html
http://lists.openmicroscopy.org.uk/pipermail/ome-users/2014-May/004419.html
Change History (5)
comment:1 Changed 9 years ago by mlinkert
- Milestone changed from Unscheduled to 5.1.1
comment:2 Changed 9 years ago by rleigh
- Description modified (diff)
comment:4 Changed 9 years ago by mlinkert
- Resolution set to fixed
- Status changed from new to closed
comment:5 Changed 9 years ago by Melissa Linkert <melissa@…>
- Remaining Time set to 0
(In [f3a20d6b725c99074b764f70a843187997368945/bioformats.git] on branch develop) ImageJ: propagate min/max display values to all channels by default
Fixes #12267.
Moving to 5.1.1 for triage.