Task #9186 (closed)
Opened 12 years ago
Closed 12 years ago
Bug: Deltavision images are open upside down
| Reported by: | omero | Owned by: | mlinkert |
|---|---|---|---|
| Priority: | minor | Milestone: | OMERO-4.4.4 |
| Component: | Bio-Formats | Version: | n.a. |
| Keywords: | n.a. | Cc: | carandraug+dev@…, l.mullee1@… |
| Resources: | n.a. | Referenced By: | n.a. |
| References: | n.a. | Remaining Time: | n.a. |
| Sprint: | n.a. |
Description
Hi
When opening a dv file (from a Deltavision microscope with softWoRx software) on ImageJ with the LOCI bioformats plugin, the image appears upside down. To fix this, I need to flip the image vertically. I have attached an actual dv file (with its dv.log pair and a jpg of the actual picture taken by the microscope) to reproduce the problem.
This bug is a small thing but coordinates set during the experiment on the microscope (or analysis done with other software) will be incorrect later when using Bioformats.
I have tested this on FIJI on Debian squeeze (LOCI plugins revision b4b47ad release 4.3-DEV) and FIJI on Mac OSX 10.5.8 (LOCI plugins revision d3781f8 release 4.4-DEV).
Attachments (3)
Change History (7)
Changed 12 years ago by omero
comment:1 Changed 12 years ago by mlinkert
- Owner set to mlinkert-x
- Summary changed from Deltavision images are open upside down to Bug: Deltavision images are open upside down
- Type changed from Bug to Task
comment:2 Changed 12 years ago by mlinkert
- Component set to Bio-Formats
- Milestone set to OMERO-Beta4.4.1
comment:3 Changed 12 years ago by mlinkert
- Milestone changed from OMERO-4.4.x to OMERO-4.4.1
comment:4 Changed 12 years ago by mlinkert
- Resolution set to fixed
- Status changed from new to closed
Fixed with this commit: https://github.com/melissalinkert/bioformats/commit/9d6086545508e082eebf12a995ea5470b8952f47
Note that new builds are not yet available.
original dv file from microscope