Task #8445 (closed)
Opened 12 years ago
Closed 12 years ago
Bug: IVision reader throws error parsing 'Unknown Binning value'
| Reported by: | rleigh | Owned by: | mlinkert |
|---|---|---|---|
| Priority: | major | Milestone: | OMERO-4.4 |
| Component: | Bio-Formats | Version: | n.a. |
| Keywords: | n.a. | Cc: | |
| Resources: | n.a. | Referenced By: | n.a. |
| References: | n.a. | Remaining Time: | 0.0d |
| Sprint: | 2012-04-10 (12) |
Description
% showinf /Users/rleigh/images/ivision/jcb/200810162/wt\ ba\ no\ bio.ipm Checking file format [IVision]
Initializing reader
Populating metadata
Looking for XML metadata
Populating core metadata
Populating MetadataStore?
Expected positive value for NominalMagnification?; got null
Unknown Binning value '
x
' will be stored as "Other"
Exception in thread "main" java.lang.NumberFormatException?: empty String
at sun.misc.FloatingDecimal?.readJavaFormatString(FloatingDecimal?.java:992)
at java.lang.Double.valueOf(Double.java:475)
at java.lang.Double.<init>(Double.java:567)
at loci.formats.in.IvisionReader?.initFile(IvisionReader?.java:309)
at loci.formats.FormatReader?.setId(FormatReader?.java:1091)
at loci.formats.ImageReader?.setId(ImageReader?.java:682)
at loci.formats.ReaderWrapper?.setId(ReaderWrapper?.java:492)
at loci.formats.tools.ImageInfo?.testRead(ImageInfo?.java:971)
at loci.formats.tools.ImageInfo?.main(ImageInfo?.java:1004)
Change History (2)
comment:1 Changed 12 years ago by mlinkert
- Remaining Time set to 0.001
- Status changed from new to accepted
comment:2 Changed 12 years ago by mlinkert
- Remaining Time changed from 0.001 to 0
- Status changed from accepted to closed
Should be fixed with https://github.com/melissalinkert/bioformats/commit/5cc196dd44a458b1292ac0e09b3515c7fe6c4479 and https://github.com/melissalinkert/bioformats/commit/2dd95c950f073ab20abb968a6582a8a87362bca7.