Warning: Can't synchronize with repository "(default)" (/home/git/ome.git does not appear to be a Git repository.). Look in the Trac log for more information.
Notice: In order to edit this ticket you need to be either: a Product Owner, The owner or the reporter of the ticket, or, in case of a Task not yet assigned, a team_member"

Task #6479 (closed)

Opened 13 years ago

Closed 12 years ago

Fix up FilePattern to allow files in multiple directories

Reported by: mlinkert Owned by: mlinkert
Priority: minor Milestone: OMERO-4.4
Component: Bio-Formats Version: n.a.
Keywords: n.a. Cc: gbonamy@…
Resources: n.a. Referenced By: n.a.
References: n.a. Remaining Time: 0.0d
Sprint: n.a.

Description

There is now a nice new utility method to build a regular expression pattern from a list of files (FilePattern?.findPattern(String[])), but unfortunately it is limited to accepting only files that are in the same directory.

It would be nice to allow files in multiple directories, such as:

/data/a/x.tiff
/data/a/y.tiff
/data/a/z.tiff
/data/b/xx.tiff
/data/b/yy.tiff
...

I think the biggest change would need to happen in buildFiles(...), so that it recursively searches a directory instead of just listing the first file's parent directory.

Change History (2)

comment:1 Changed 13 years ago by mlinkert

  • Milestone changed from OMERO-Beta4.3.2 to OME-5.0
  • Sprint 2011-09-01 (4) deleted

Given that we are only one week away from packaging JARs for 4.3.2 (and there are several important bugs left), I don't think this is going to happen for 4.3.2.

comment:2 Changed 12 years ago by mlinkert

  • Remaining Time changed from 1 to 0
  • Resolution set to fixed
  • Status changed from new to closed

Feature added in https://github.com/melissalinkert/bioformats/commit/6419a610e9da2f7bf126ace89543eb084e7a5721

A build with that change is not yet available.

Note: See TracTickets for help on using tickets. You may also have a look at Agilo extensions to the ticket.

1.3.13-PRO © 2008-2011 Agilo Software all rights reserved (this page was served in: 0.62018 sec.)

We're Hiring!