Bug #13309 (new)
Opened 8 years ago
Last modified 7 years ago
CellSensReader regression
Reported by: | szleo | Owned by: | |
---|---|---|---|
Priority: | major | Cc: | romain.guiet@… |
Sprint: | n.a. | ||
Total Remaining Time: | n.a. |
Description
See https://www.openmicroscopy.org/qa2/qa/feedback/17412.
While reading the provided Image_02.vsi dataset, CellSensReader incorrectly sees some series as both multi-C and multi-Z (expected: all multi-C).
I've done some preliminary investigation on this and I have two notes:
- Caused by https://github.com/openmicroscopy/bioformats/pull/2267
- From the showinf output it looks like the phantom Z-stacks appear only in series where sizeC is different from effectiveSizeC
Change History (2)
comment:1 Changed 7 years ago by dgault
comment:2 Changed 7 years ago by mlinkert
- Owner mlinkert deleted
Relevant Trello card is: https://trello.com/c/LXfwDnlK/126-vsi-issues
An additional report of this issue was reported via the forum: https://www.openmicroscopy.org/community/posting.php?mode=reply&f=13&t=8253
Associated QA file is QA-17658
Issue has been tested and reproduced with Bio-Formats 5.4.0
Further testing and investigation is required to root cause the problem.