Task #12158 (closed)
Opened 10 years ago
Closed 10 years ago
BUG: Bio-formats remote importer
Reported by: | pwalczysko | Owned by: | mlinkert |
---|---|---|---|
Priority: | major | Milestone: | 5.0.2 |
Component: | Bio-Formats | Version: | 5.0.0 |
Keywords: | n.a. | Cc: | ux@…, jamoore |
Resources: | n.a. | Referenced By: | n.a. |
References: | n.a. | Remaining Time: | n.a. |
Sprint: | n.a. |
Description
Noticed by @cblackburn during 5.0.1rc1 testing.
This applies to both bioformats_package.jar and loci_tools.jar
Using Bio-Formats Remote Importer the URL http://imagej.nih.gov/ij/images/mri.gif brings up the Import Options dialog but clicking Okay nothing happens, no image appears. The image is definitely there and imports locally into IJ. This is a fragment from the Debug window: Bio-Formats:
loci.plugins.in.MainDialog?: prompt
GUI.getMaxWindowBounds: java.awt.Rectangle[x=4,y=22,width=2556,height=1418] out> GIFReader initializing http://imagej.nih.gov/ij/images/mri.gif out> loci.formats.in.GIFReader.initFile(http://imagej.nih.gov/ij/images/mri.gif) out> Verifying GIF format out> Reading dimensions out> Reading data blocks out> Populating metadata Bio-Formats: loci.plugins.in.FilePatternDialog: prompt
Then nothing other than a lot of CPU usage (500+ %) by the IJ process
Change History (4)
comment:1 Changed 10 years ago by pwalczysko
comment:2 Changed 10 years ago by mlinkert
Colin, did you have the "Group files with similar names" option checked? If so, does it work when that box is unchecked?
So far, checking that box is the only way I've been able to duplicate the problem - the issue is that it's trying to list the files in http://imagej.nih.gov/ij/images/, which is really very slow. Worth fixing, but I don't think this should block 5.0.1 given that it's not a regression.
comment:3 Changed 10 years ago by mlinkert
- Cc jmoore mlinkert-x mlinkert removed
- Milestone changed from 5.0.1 to 5.0.2
- Priority changed from blocker to major
comment:4 Changed 10 years ago by mlinkert
- Resolution set to fixed
- Status changed from new to closed
See line 3 here for the original doc : https://docs.google.com/spreadsheet/ccc?key=0AoKiTAl8UOxndDAxRmdETDRFSm44RC0xaEhXd2xsSlE&usp=drive_web#gid=13