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Task #12083 (closed)

Opened 10 years ago

Closed 9 years ago

Bug: NPE when parsing FEI TIFF metadata

Reported by: omero-qa Owned by: mlinkert
Priority: minor Milestone: 5.1.1
Component: Bio-Formats Version: 5.0.0
Keywords: n.a. Cc: ellen.arena@…
Resources: n.a. Referenced By: n.a.
References: n.a. Remaining Time: n.a.
Sprint: n.a.

Description

​https://www.openmicroscopy.org/qa2/qa2/qa/feedback/7956/

java.lang.NullPointerException
	at loci.formats.in.FEITiffReader.initStandardMetadata(FEITiffReader.java:139)
	at loci.formats.in.BaseTiffReader.initMetadata(BaseTiffReader.java:99)
	at loci.formats.in.BaseTiffReader.initFile(BaseTiffReader.java:545)
	at loci.formats.FormatReader.setId(FormatReader.java:1360)
	at loci.formats.ImageReader.setId(ImageReader.java:781)
	at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:576)
	at loci.formats.ChannelFiller.setId(ChannelFiller.java:263)
	at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:576)
	at loci.formats.ChannelSeparator.setId(ChannelSeparator.java:274)
	at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:576)
	at loci.formats.Memoizer.setId(Memoizer.java:471)
	at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:576)
	at ome.formats.importer.ImportCandidates.singleFile(ImportCandidates.java:414)
	at ome.formats.importer.ImportCandidates.handleFile(ImportCandidates.java:595)
	at ome.formats.importer.ImportCandidates.execute(ImportCandidates.java:371)
	at ome.formats.importer.ImportCandidates.<init>(ImportCandidates.java:229)
	at ome.formats.importer.ImportCandidates.<init>(ImportCandidates.java:180)
	at org.openmicroscopy.shoola.env.data.OMEROGateway.getImportCandidates(OMEROGateway.java:6374)
	at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.importFile(OmeroImageServiceImpl.java:1140)
	at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.importFile(ImagesImporter.java:77)
	at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.access$000(ImagesImporter.java:53)
	at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter$1.doCall(ImagesImporter.java:102)
	at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144)
	at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226)
	at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126)
	at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165)
	at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276)
	at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91)
	at java.lang.Thread.run(Thread.java:695)

Originally reported against 5.0.0-rc1; confirmed with current dev_5_0.

Change History (2)

comment:1 Changed 9 years ago by mlinkert

  • Component changed from from QA to Bio-Formats
  • Milestone changed from Unscheduled to 5.1.1

Moving to 5.1.1 for triage.

comment:2 Changed 9 years ago by jburel

  • Resolution set to fixed
  • Status changed from new to closed

see ​https://github.com/openmicroscopy/bioformats/pull/1707

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