Task #12035 (closed)
Opened 10 years ago
Closed 10 years ago
Bug: some multidimensional Imspector files are read incorrectly
| Reported by: | mlinkert | Owned by: | mlinkert |
|---|---|---|---|
| Priority: | major | Milestone: | 5.0.2 |
| Component: | Bio-Formats | Version: | 5.0.0 |
| Keywords: | imspector, external | Cc: | e.mcghee@…, dietzel@… |
| Resources: | n.a. | Referenced By: | n.a. |
| References: | n.a. | Remaining Time: | n.a. |
| Sprint: | n.a. |
Description
Change History (4)
comment:1 Changed 10 years ago by mlinkert
- Cc dietzel@… added
comment:2 Changed 10 years ago by mlinkert
- Milestone changed from 5.0.1 to 5.0.2
comment:3 Changed 10 years ago by imunro-x
A preliminary look at the file referenced in http://lists.openmicroscopy.org.uk/pipermail/ome-users/2014-March/004245.html shows that the Instrument Mode field in the header
is set to Instrument Mode::Single-Beam Ti:Sa: . Now ImspectorReader?.java seems to look for either TCSPC or FLIM in this field (line 197) in order to set the isFLIM flag to true.
It's not , however, clear whether this field is set manually or not. Hoping to clarify this via ome-users.
comment:4 Changed 10 years ago by mlinkert
- Resolution set to fixed
- Status changed from new to closed
Fixed with https://github.com/openmicroscopy/bioformats/pull/1061. New builds are not yet available, but this fix should be included in 5.0.2.
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See also http://www.openmicroscopy.org/community/viewtopic.php?f=13&t=7475&p=13762#p13757 and QA 7992.