Context Navigation

← Previous Ticket
Next Ticket →

Warning: Can't synchronize with repository "(default)" (/home/git/ome.git does not appear to be a Git repository.). Look in the Trac log for more information.

Notice: In order to edit this ticket you need to be either: a Product Owner, The owner or the reporter of the ticket, or, in case of a Task not yet assigned, a team_member"

Task #12033 (closed)

Opened 10 years ago

Closed 9 years ago

Bug: ome.conditions.ResourceError: Error instantiating pixel buffer: /home/omero/OMERO.data/Pixels/1_pyramid

Reported by:	omero	Owned by:
Priority:	major	Milestone:	Unscheduled
Component:	General	Version:	5.0.0
Keywords:	n.a.	Cc:	spli, jburel, mlinkert
Resources:	n.a.	Referenced By:	n.a.
References:	n.a.	Remaining Time:	n.a.
Sprint:	n.a.

Description

Hi,

I tested your VIRTUAL MACHINE and get an error when I want to open the uploaded pictures. The error occurs in the webviewer as well as in the omero.client. The Blitz-1.log and the omeroinsight.log is attached in the ZIP file. Can you help me?

References

Attachments (1)

error_pyramid.zip (65.6 KB) - added by omero 10 years ago.: Error instantiating pixel buffer

Download all attachments as: .zip

Change History (4)

Changed 10 years ago by omero

Attachment error_pyramid.zip added

Error instantiating pixel buffer

comment:1 Changed 10 years ago by jamoore

Cc spli jburel added
Priority changed from minor to major
Summary changed from ome.conditions.ResourceError: Error instantiating pixel buffer: /home/omero/OMERO.data/Pixels/1_pyramid to Bug: ome.conditions.ResourceError: Error instantiating pixel buffer: /home/omero/OMERO.data/Pixels/1_pyramid
Type changed from Bug to Task

comment:2 Changed 10 years ago by jamoore

Cc mlinkert added
Component set to General
Milestone set to Unscheduled
Version set to 5.0.0

The error in your server log:

2014-03-03 16:20:59,457 ERROR [                ome.io.nio.PixelsService] (.Server-14) Error instantiating pixel buffer: /home/omero/OMERO.data/Pixels/1_pyramid
ome.conditions.ResourceError: FormatException: /home/omero/OMERO.data/Pixels/1_pyramid
Invalid TIFF file
        at ome.io.bioformats.BfPixelBuffer.reader(BfPixelBuffer.java:74)
        at ome.io.bioformats.BfPixelBuffer.isLittleEndian(BfPixelBuffer.java:93)
        at ome.io.bioformats.BfPyramidPixelBuffer.initializeReader(BfPyramidPixelBuffer.java:210)
        at ome.io.bioformats.BfPyramidPixelBuffer.init(BfPyramidPixelBuffer.java:185)
        at ome.io.bioformats.BfPyramidPixelBuffer.<init>(BfPyramidPixelBuffer.java:169)
        at ome.io.bioformats.BfPyramidPixelBuffer.<init>(BfPyramidPixelBuffer.java:158)
        at ome.io.bioformats.BfPyramidPixelBuffer.<init>(BfPyramidPixelBuffer.java:141)
        at ome.io.nio.PixelsService.createPyramidPixelBuffer(PixelsService.java:636)
        at ome.io.nio.PixelsService.getPixelBuffer(PixelsService.java:410)
        at ome.services.RawPixelsBean.setPixelsId(RawPixelsBean.java:280)

Likely this means that your Pixel service ran out of memory. If you could also upload your var/log/PixelData-0.log file that would be great.

(Unfortunately, I don't have an email address for you. If you need to upload a file you can do so via http://qa.openmicroscopy.org.uk/qa/upload/)

comment:3 Changed 9 years ago by jamoore

Resolution set to invalid
Status changed from new to closed

No response.

Note: See TracTickets for help on using tickets. You may also have a look at Agilo extensions to the ticket.

Download in other formats: