2013-01-10 10:35:17,160 INFO [ ome.formats.importer.ImportConfig] (Thread-351) OMERO Version: 4.4.4-766-7e18246-dirty-ice33-b111 2013-01-10 10:35:17,161 INFO [ ome.formats.importer.ImportConfig] (Thread-351) Bioformats version: 4.5-DEV revision: c6ff3cd date: 10 January 2013 2013-01-10 10:35:25,841 ERROR [opy.shoola.agents.imviewer.BirdEyeLoader] (entQueue-0) Bird Eye Retrieval Failure: java.lang.Exception: No bird eye view. 2013-01-10 10:36:09,432 ERROR [py.shoola.env.data.OmeroImageServiceImpl] (Thread-579) Thumbnail service null for pixelsID: [401, 399] 2013-01-10 10:39:54,681 ERROR [opy.shoola.agents.imviewer.BirdEyeLoader] (entQueue-0) Bird Eye Retrieval Failure: java.lang.Exception: No bird eye view. 2013-01-10 10:41:04,048 DEBUG [copy.shoola.env.data.DataServicesFactory] (Thread-632) Connection ErrorIce.SocketException error = 0 at IceInternal.Selector.setInterrupt(Selector.java:347) at IceInternal.Selector.remove(Selector.java:107) at IceInternal.ThreadPool.finish(ThreadPool.java:183) at Ice.ConnectionI.setState(ConnectionI.java:1454) at Ice.ConnectionI.setState(ConnectionI.java:1351) at Ice.ConnectionI.sendRequest(ConnectionI.java:383) at IceInternal.ConnectionRequestHandler.sendRequest(ConnectionRequestHandler.java:36) at IceInternal.Outgoing.invoke(Outgoing.java:66) at omero.api._IMetadataDelM.loadAnnotations(_IMetadataDelM.java:260) at omero.api.IMetadataPrxHelper.loadAnnotations(IMetadataPrxHelper.java:320) at omero.api.IMetadataPrxHelper.loadAnnotations(IMetadataPrxHelper.java:292) at org.openmicroscopy.shoola.env.data.OMEROGateway.loadAnnotations(OMEROGateway.java:2739) at org.openmicroscopy.shoola.env.data.OmeroMetadataServiceImpl.loadStructuredAnnotations(OmeroMetadataServiceImpl.java:1022) at org.openmicroscopy.shoola.env.data.OmeroMetadataServiceImpl.loadStructuredData(OmeroMetadataServiceImpl.java:707) at org.openmicroscopy.shoola.env.data.OmeroMetadataServiceImpl.loadStructuredData(OmeroMetadataServiceImpl.java:811) at org.openmicroscopy.shoola.env.data.views.calls.StructuredAnnotationLoader$6.doCall(StructuredAnnotationLoader.java:211) at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276) at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) at java.lang.Thread.run(Thread.java:680) Caused by: java.nio.channels.ClosedByInterruptException at java.nio.channels.spi.AbstractInterruptibleChannel.end(AbstractInterruptibleChannel.java:184) at sun.nio.ch.SinkChannelImpl.write(SinkChannelImpl.java:153) at IceInternal.Selector.setInterrupt(Selector.java:343) ... 22 more Connection ErrorIce.SocketException error = 0 at IceInternal.Selector.setInterrupt(Selector.java:347) at IceInternal.Selector.remove(Selector.java:107) at IceInternal.ThreadPool.finish(ThreadPool.java:183) at Ice.ConnectionI.setState(ConnectionI.java:1454) at Ice.ConnectionI.setState(ConnectionI.java:1351) at Ice.ConnectionI.sendRequest(ConnectionI.java:383) at IceInternal.ConnectionRequestHandler.sendRequest(ConnectionRequestHandler.java:36) at IceInternal.Outgoing.invoke(Outgoing.java:66) at omero.api._IMetadataDelM.loadAnnotations(_IMetadataDelM.java:260) at omero.api.IMetadataPrxHelper.loadAnnotations(IMetadataPrxHelper.java:320) at omero.api.IMetadataPrxHelper.loadAnnotations(IMetadataPrxHelper.java:292) at org.openmicroscopy.shoola.env.data.OMEROGateway.loadAnnotations(OMEROGateway.java:2739) at org.openmicroscopy.shoola.env.data.OmeroMetadataServiceImpl.loadStructuredAnnotations(OmeroMetadataServiceImpl.java:1022) at org.openmicroscopy.shoola.env.data.OmeroMetadataServiceImpl.loadStructuredData(OmeroMetadataServiceImpl.java:707) at org.openmicroscopy.shoola.env.data.OmeroMetadataServiceImpl.loadStructuredData(OmeroMetadataServiceImpl.java:811) at org.openmicroscopy.shoola.env.data.views.calls.StructuredAnnotationLoader$6.doCall(StructuredAnnotationLoader.java:211) at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276) at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) at java.lang.Thread.run(Thread.java:680) Caused by: java.nio.channels.ClosedByInterruptException at java.nio.channels.spi.AbstractInterruptibleChannel.end(AbstractInterruptibleChannel.java:184) at sun.nio.ch.SinkChannelImpl.write(SinkChannelImpl.java:153) at IceInternal.Selector.setInterrupt(Selector.java:343) ... 22 more Exception in thread "Thread-632" 2013-01-10 10:58:28,621 WARN [ ome.system.UpgradeCheck] (nitializer) UPGRADE AVAILABLE:Please upgrade to 4.4.5 See http://trac.openmicroscopy.org.uk/omero for the latest version 2013-01-10 10:58:28,706 INFO [opy.shoola.env.rnd.PixelsServicesFactory] (nitializer) Heap memory usage: max 1060372480 2013-01-10 10:58:28,717 INFO [enmicroscopy.shoola.env.init.TaskBarInit] (nitializer) Loaded L&F: com.apple.laf.AquaLookAndFeel 2013-01-10 10:58:32,933 INFO [copy.shoola.env.data.DataServicesFactory] (nitializer) Server version: 4.4.4 Client version: 4.4.4-766-7e18246-dirty-ice33-b111 os_name: Mac OS X os_arch: x86_64 java_version: 1.6.0_37 os_version: 10.6.8