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Ticket #12007: PixelData-0.log

File PixelData-0.log, 8.1 KB (added by pwalczysko, 10 years ago)
Line 
12014-02-21 14:16:57,794 INFO  [                ome.services.blitz.Entry] (      main) Waiting 10000 ms on startup
22014-02-21 14:17:07,801 INFO  [                ome.services.blitz.Entry] (      main) Creating ome.pixeldata. Please wait...
32014-02-21 14:17:09,300 INFO  [           ome.services.util.DBUserCheck] (      main) User root.id = 0
42014-02-21 14:17:09,300 INFO  [           ome.services.util.DBUserCheck] (      main) User guest.id = 1
52014-02-21 14:17:09,300 INFO  [           ome.services.util.DBUserCheck] (      main) Group system.id = 0
62014-02-21 14:17:09,300 INFO  [           ome.services.util.DBUserCheck] (      main) Group user.id = 1
72014-02-21 14:17:09,300 INFO  [           ome.services.util.DBUserCheck] (      main) Group guest.id = 2
82014-02-21 14:17:09,303 INFO  [      ome.services.util.JvmSettingsCheck] (      main) Java version: 1.6.0_20; Linux; amd64; 2.6.32-24-server
92014-02-21 14:17:09,303 INFO  [      ome.services.util.JvmSettingsCheck] (      main) Max Memory (MB):   =    910
102014-02-21 14:17:09,304 INFO  [      ome.services.util.JvmSettingsCheck] (      main) OS Memory (MB):    =  16080
112014-02-21 14:17:09,304 INFO  [      ome.services.util.JvmSettingsCheck] (      main) Processors:        =      8
122014-02-21 14:17:09,330 INFO  [.s.ShutdownSafeEhcacheManagerFactoryBean] (      main) Initializing EHCache CacheManager
132014-02-21 14:17:11,666 INFO  [  ome.services.fulltext.FullTextAnalyzer] (      main) Initialized FullTextAnalyzer
142014-02-21 14:17:17,582 INFO  [                ome.io.nio.PixelsService] (      main) Using Bio-Formats Cache: /nightshade/OMERO/omero-c6100-dec-5-2013-valuable/OMERO-merge-develop-FS/BioFormatsCache
152014-02-21 14:17:17,582 INFO  [                ome.io.nio.PixelsService] (      main) PixelsService(path=/nightshade/OMERO/omero-c6100-dec-5-2013-valuable/OMERO-merge-develop-FS, resolver=ome.services.OmeroFilePathResolver@4a248a0a, backoff=ome.io.nio.SimpleBackOff(factor=56.5), sizes=ome.io.nio.ConfiguredTileSizes(w=256,h=256,W=3192,H=3192))
162014-02-21 14:17:17,587 INFO  [  ome.services.pixeldata.PixelDataThread] (      main) Initializing PixelDataThread (threads=2)
172014-02-21 14:17:17,838 INFO  [        ome.services.db.DatabaseIdentity] (      main) Using LSID format: urn:lsid:export.openmicroscopy.org:%s:73e8e6ff-d6fe-4c12-8397-3af0d1d901d2_%s%s
182014-02-21 14:17:18,000 INFO  [    ome.services.fulltext.FullTextThread] (      main) Initializing Full-Text Indexer
192014-02-21 14:17:18,008 INFO  [    ome.tools.hibernate.ExtendedMetadata] (      main) Calculating ExtendedMetadata...
202014-02-21 14:17:18,164 INFO  [      o.s.scheduler.SchedulerFactoryBean] (      main) Starting Quartz Scheduler now
212014-02-21 14:17:18,321 INFO  [                ome.services.blitz.Entry] (      main) ome.pixeldata now accepting connections.
222014-02-21 14:17:18,521 INFO  [       ome.security.basic.CurrentDetails] (3-thread-2) Adding log:INSERT,class ome.model.meta.Session,12983
232014-02-21 14:17:19,040 INFO  [             ome.io.nio.FilePathResolver] (3-thread-4) Metadata only file, resulting path: /nightshade/OMERO/omero-c6100-dec-5-2013-valuable/OMERO-merge-develop-FS/ManagedRepository/user-5_4/2014-02/20/09-54-13.873/foo-1048576x256.tif
242014-02-21 14:17:19,040 INFO  [             ome.io.nio.FilePathResolver] (3-thread-3) Metadata only file, resulting path: /nightshade/OMERO/omero-c6100-dec-5-2013-valuable/OMERO-merge-develop-FS/ManagedRepository/user-1_8/2014-02/21/11-13-53.176/CMU-2-40x - 2010-01-12 13.38.58.vms
252014-02-21 14:17:19,420 INFO  [                   loci.formats.Memoizer] (3-thread-4) Different Git version: dff619a not 931c076
262014-02-21 14:17:19,421 INFO  [                loci.formats.ImageReader] (3-thread-3) HamamatsuVMSReader initializing /nightshade/OMERO/omero-c6100-dec-5-2013-valuable/OMERO-merge-develop-FS/ManagedRepository/user-1_8/2014-02/21/11-13-53.176/CMU-2-40x - 2010-01-12 13.38.58.vms
272014-02-21 14:17:20,507 INFO  [                loci.formats.ImageReader] (3-thread-4) TiffDelegateReader initializing /nightshade/OMERO/omero-c6100-dec-5-2013-valuable/OMERO-merge-develop-FS/ManagedRepository/user-5_4/2014-02/20/09-54-13.873/foo-1048576x256.tif
282014-02-21 14:17:20,509 INFO  [       loci.formats.in.MinimalTiffReader] (3-thread-4) Reading IFDs
292014-02-21 14:17:20,511 INFO  [       loci.formats.in.MinimalTiffReader] (3-thread-4) Populating metadata
302014-02-21 14:17:20,531 INFO  [              loci.formats.in.TiffReader] (3-thread-4) Checking comment style
312014-02-21 14:17:20,532 INFO  [          loci.formats.in.BaseTiffReader] (3-thread-4) Populating OME metadata
322014-02-21 14:17:20,743 INFO  [                ome.io.nio.PixelsService] (3-thread-3) Creating BfPixelBuffer: /nightshade/OMERO/omero-c6100-dec-5-2013-valuable/OMERO-merge-develop-FS/ManagedRepository/user-1_8/2014-02/21/11-13-53.176/CMU-2-40x - 2010-01-12 13.38.58.vms Series: 0
332014-02-21 14:17:20,743 INFO  [                ome.io.nio.PixelsService] (3-thread-3) Destination pyramid tile size: java.awt.Dimension[width=1024,height=1024]
342014-02-21 14:17:20,745 INFO  [                ome.io.nio.PixelsService] (3-thread-3) Pyramid creation for Pixels:22259 1/10800 (0%).
352014-02-21 14:17:20,755 INFO  [                ome.io.nio.PixelsService] (3-thread-4) Creating BfPixelBuffer: /nightshade/OMERO/omero-c6100-dec-5-2013-valuable/OMERO-merge-develop-FS/ManagedRepository/user-5_4/2014-02/20/09-54-13.873/foo-1048576x256.tif Series: 0
362014-02-21 14:17:20,756 INFO  [                ome.io.nio.PixelsService] (3-thread-4) Destination pyramid tile size: java.awt.Dimension[width=256,height=256]
372014-02-21 14:17:20,756 INFO  [                ome.io.nio.PixelsService] (3-thread-4) Pyramid creation for Pixels:21354 1/12288 (0%).
382014-02-21 14:26:56,142 INFO  [                ome.io.nio.PixelsService] (3-thread-3) Pyramid creation for Pixels:22259 1081/10800 (10%).
392014-02-21 14:37:49,889 INFO  [                ome.io.nio.PixelsService] (3-thread-3) Pyramid creation for Pixels:22259 2161/10800 (20%).
402014-02-21 14:47:44,750 INFO  [                ome.io.nio.PixelsService] (3-thread-3) Pyramid creation for Pixels:22259 3241/10800 (30%).
412014-02-21 14:55:53,544 INFO  [                ome.io.nio.PixelsService] (3-thread-3) Pyramid creation for Pixels:22259 4321/10800 (40%).
422014-02-21 15:06:16,043 INFO  [                ome.io.nio.PixelsService] (3-thread-3) Pyramid creation for Pixels:22259 5401/10800 (50%).
432014-02-21 15:17:41,104 INFO  [                ome.io.nio.PixelsService] (3-thread-3) Pyramid creation for Pixels:22259 6481/10800 (60%).
442014-02-21 15:25:18,904 INFO  [                ome.io.nio.PixelsService] (3-thread-3) Pyramid creation for Pixels:22259 7561/10800 (70%).
452014-02-21 15:35:37,411 INFO  [                ome.io.nio.PixelsService] (3-thread-3) Pyramid creation for Pixels:22259 8641/10800 (80%).
462014-02-21 15:47:08,594 INFO  [                ome.io.nio.PixelsService] (3-thread-3) Pyramid creation for Pixels:22259 9721/10800 (90%).
472014-02-21 15:55:46,091 INFO  [                ome.io.nio.PixelsService] (3-thread-3) SUCCESS -- Pyramid created for pixels id:22259
482014-02-21 15:55:46,109 INFO  [       loci.formats.in.MinimalTiffReader] (3-thread-3) Reading IFDs
492014-02-21 15:55:46,177 INFO  [       loci.formats.in.MinimalTiffReader] (3-thread-3) Populating metadata
502014-02-21 15:55:46,225 INFO  [              loci.formats.in.TiffReader] (3-thread-3) Checking comment style
512014-02-21 15:55:46,226 INFO  [          loci.formats.in.BaseTiffReader] (3-thread-3) Populating OME metadata
522014-02-21 16:02:05,005 INFO  [ ome.services.pixeldata.PixelDataHandler] (3-thread-3) Added StatsInfo:44465 for ome.model.core.Channel:Id_51277 - C:0 Max:255.0 Min:0.0
532014-02-21 16:02:05,007 INFO  [ ome.services.pixeldata.PixelDataHandler] (3-thread-3) Added StatsInfo:44466 for ome.model.core.Channel:Id_51278 - C:1 Max:255.0 Min:0.0
542014-02-21 16:02:05,010 INFO  [ ome.services.pixeldata.PixelDataHandler] (3-thread-3) Added StatsInfo:44467 for ome.model.core.Channel:Id_51279 - C:2 Max:255.0 Min:0.0
552014-02-21 16:02:05,010 INFO  [ ome.services.pixeldata.PixelDataHandler] (3-thread-3) HANDLED EventLog:3205088(entityId=22259) [6286111 ms.]
562014-02-21 16:02:05,022 ERROR [        ome.services.util.ServiceHandler] (3-thread-3) Method interface ome.services.util.Executor$Work.doWork invocation took 6286424

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