1 | 2013-02-06 11:16:10,998 INFO [opy.shoola.env.rnd.PixelsServicesFactory] (nitializer) Heap memory usage: max 1065025536 |
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2 | 2013-02-06 11:16:11,006 INFO [enmicroscopy.shoola.env.init.TaskBarInit] (nitializer) Loaded L&F: com.apple.laf.AquaLookAndFeel |
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3 | 2013-02-06 11:17:15,746 INFO [copy.shoola.env.data.DataServicesFactory] (nitializer) Server version: 4.4.5 |
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4 | Client version: 4.4.5-607-5d8261a-dirty-ice33-b148 |
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5 | os_name: Mac OS X |
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6 | os_arch: x86_64 |
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7 | java_version: 1.6.0_37 |
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8 | os_version: 10.6.8 |
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9 | |
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10 | 2013-02-06 11:17:16,873 INFO [y.shoola.env.data.login.LoginServiceImpl] (nitializer) Logged onto OMERO at: howe.openmicroscopy.org.uk |
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11 | User Name: user-6 -- Password: *** |
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12 | |
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13 | 2013-02-06 11:19:10,308 DEBUG [copy.shoola.env.data.DataServicesFactory] (Thread-324) Connection ErrorIce.CommunicatorDestroyedException |
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14 | at IceInternal.OutgoingConnectionFactory.findConnectionByEndpoint(OutgoingConnectionFactory.java:451) |
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15 | at IceInternal.OutgoingConnectionFactory.create(OutgoingConnectionFactory.java:265) |
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16 | at IceInternal.RoutableReference.createConnection(RoutableReference.java:848) |
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17 | at IceInternal.RoutableReference$1.setEndpoints(RoutableReference.java:484) |
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18 | at IceInternal.RouterInfo.getClientEndpoints(RouterInfo.java:92) |
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19 | at IceInternal.RoutableReference.getConnection(RoutableReference.java:476) |
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20 | at IceInternal.ConnectRequestHandler.connect(ConnectRequestHandler.java:41) |
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21 | at Ice._ObjectDelM.setup(_ObjectDelM.java:275) |
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22 | at Ice.ObjectPrxHelperBase.createDelegate(ObjectPrxHelperBase.java:1007) |
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23 | at Ice.ObjectPrxHelperBase.__getDelegate(ObjectPrxHelperBase.java:946) |
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24 | at omero.api.ServiceFactoryPrxHelper.getQueryService(ServiceFactoryPrxHelper.java:1108) |
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25 | at omero.api.ServiceFactoryPrxHelper.getQueryService(ServiceFactoryPrxHelper.java:1082) |
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26 | at org.openmicroscopy.shoola.env.data.Connector.getQueryService(Connector.java:330) |
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27 | at org.openmicroscopy.shoola.env.data.OMEROGateway.getQueryService(OMEROGateway.java:1494) |
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28 | at org.openmicroscopy.shoola.env.data.OMEROGateway.loadPlaneInfo(OMEROGateway.java:6054) |
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29 | at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.loadPlaneInfo(OmeroImageServiceImpl.java:1005) |
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30 | at org.openmicroscopy.shoola.env.data.views.calls.PlaneInfoLoader$1.doCall(PlaneInfoLoader.java:78) |
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31 | at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) |
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32 | at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) |
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33 | at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) |
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34 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) |
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35 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276) |
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36 | at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) |
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37 | at java.lang.Thread.run(Thread.java:680) |
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38 | Connection ErrorIce.CommunicatorDestroyedException |
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39 | at IceInternal.OutgoingConnectionFactory.findConnectionByEndpoint(OutgoingConnectionFactory.java:451) |
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40 | at IceInternal.OutgoingConnectionFactory.create(OutgoingConnectionFactory.java:265) |
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41 | at IceInternal.RoutableReference.createConnection(RoutableReference.java:848) |
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42 | at IceInternal.RoutableReference$1.setEndpoints(RoutableReference.java:484) |
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43 | at IceInternal.RouterInfo.getClientEndpoints(RouterInfo.java:92) |
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44 | at IceInternal.RoutableReference.getConnection(RoutableReference.java:476) |
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45 | at IceInternal.ConnectRequestHandler.connect(ConnectRequestHandler.java:41) |
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46 | at Ice._ObjectDelM.setup(_ObjectDelM.java:275) |
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47 | at Ice.ObjectPrxHelperBase.createDelegate(ObjectPrxHelperBase.java:1007) |
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48 | at Ice.ObjectPrxHelperBase.__getDelegate(ObjectPrxHelperBase.java:946) |
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49 | at omero.api.ServiceFactoryPrxHelper.getQueryService(ServiceFactoryPrxHelper.java:1108) |
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50 | at omero.api.ServiceFactoryPrxHelper.getQueryService(ServiceFactoryPrxHelper.java:1082) |
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51 | at org.openmicroscopy.shoola.env.data.Connector.getQueryService(Connector.java:330) |
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52 | at org.openmicroscopy.shoola.env.data.OMEROGateway.getQueryService(OMEROGateway.java:1494) |
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53 | at org.openmicroscopy.shoola.env.data.OMEROGateway.loadPlaneInfo(OMEROGateway.java:6054) |
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54 | at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.loadPlaneInfo(OmeroImageServiceImpl.java:1005) |
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55 | at org.openmicroscopy.shoola.env.data.views.calls.PlaneInfoLoader$1.doCall(PlaneInfoLoader.java:78) |
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56 | at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) |
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57 | at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) |
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58 | at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) |
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59 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) |
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60 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276) |
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61 | at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) |
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62 | at java.lang.Thread.run(Thread.java:680) |
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63 | Exception in thread "Thread-324" |
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64 | |
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65 | 2013-02-06 11:19:10,698 ERROR [y.shoola.agents.imviewer.PlaneInfoLoader] (entQueue-0) State: 7Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSOutOfServiceException: Cannot access the Query service. |
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66 | at org.openmicroscopy.shoola.env.data.OMEROGateway.getQueryService(OMEROGateway.java:1501) |
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67 | at org.openmicroscopy.shoola.env.data.OMEROGateway.loadPlaneInfo(OMEROGateway.java:6054) |
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68 | at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.loadPlaneInfo(OmeroImageServiceImpl.java:1005) |
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69 | at org.openmicroscopy.shoola.env.data.views.calls.PlaneInfoLoader$1.doCall(PlaneInfoLoader.java:78) |
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70 | at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) |
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71 | at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) |
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72 | at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) |
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73 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) |
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74 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276) |
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75 | at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) |
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76 | at java.lang.Thread.run(Thread.java:680) |
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77 | State: 7Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSOutOfServiceException: Cannot access the Query service. |
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78 | at org.openmicroscopy.shoola.env.data.OMEROGateway.getQueryService(OMEROGateway.java:1501) |
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79 | at org.openmicroscopy.shoola.env.data.OMEROGateway.loadPlaneInfo(OMEROGateway.java:6054) |
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80 | at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.loadPlaneInfo(OmeroImageServiceImpl.java:1005) |
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81 | at org.openmicroscopy.shoola.env.data.views.calls.PlaneInfoLoader$1.doCall(PlaneInfoLoader.java:78) |
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82 | at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) |
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83 | at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) |
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84 | at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) |
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85 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) |
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86 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276) |
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87 | at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) |
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88 | at java.lang.Thread.run(Thread.java:680) |
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89 | Exception in thread "AWT-EventQueue-0" |
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90 | |
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91 | 2013-02-06 11:19:10,706 ERROR [shoola.agents.metadata.ChannelDataLoader] (entQueue-0) Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data. |
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92 | Cannot retrieve the pixels set for 6065 |
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93 | at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:891) |
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94 | at org.openmicroscopy.shoola.env.data.OMEROGateway.getPixels(OMEROGateway.java:3155) |
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95 | at org.openmicroscopy.shoola.env.data.OmeroMetadataServiceImpl.getChannelsMetadata(OmeroMetadataServiceImpl.java:2079) |
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96 | at org.openmicroscopy.shoola.env.data.views.calls.ChannelMetadataLoader$1.doCall(ChannelMetadataLoader.java:85) |
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97 | at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) |
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98 | at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) |
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99 | at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) |
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100 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) |
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101 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276) |
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102 | at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) |
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103 | at java.lang.Thread.run(Thread.java:680) |
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104 | Caused by: omero.ClientError: Call createSession() to login. |
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105 | at omero.client.getSession(client.java:490) |
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106 | at omero.model.DetailsI.<init>(DetailsI.java:50) |
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107 | at omero.model.DetailsI$1.create(DetailsI.java:27) |
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108 | at IceInternal.BasicStream.readObject(BasicStream.java:1517) |
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109 | at IceInternal.BasicStream.readPendingObjects(BasicStream.java:1739) |
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110 | at omero.api._IPixelsDelM.retrievePixDescription(_IPixelsDelM.java:513) |
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111 | at omero.api.IPixelsPrxHelper.retrievePixDescription(IPixelsPrxHelper.java:592) |
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112 | at omero.api.IPixelsPrxHelper.retrievePixDescription(IPixelsPrxHelper.java:564) |
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113 | at org.openmicroscopy.shoola.env.data.OMEROGateway.getPixels(OMEROGateway.java:3153) |
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114 | ... 9 more |
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115 | Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data. |
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116 | Cannot retrieve the pixels set for 6065 |
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117 | at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:891) |
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118 | at org.openmicroscopy.shoola.env.data.OMEROGateway.getPixels(OMEROGateway.java:3155) |
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119 | at org.openmicroscopy.shoola.env.data.OmeroMetadataServiceImpl.getChannelsMetadata(OmeroMetadataServiceImpl.java:2079) |
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120 | at org.openmicroscopy.shoola.env.data.views.calls.ChannelMetadataLoader$1.doCall(ChannelMetadataLoader.java:85) |
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121 | at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) |
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122 | at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) |
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123 | at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) |
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124 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) |
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125 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276) |
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126 | at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) |
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127 | at java.lang.Thread.run(Thread.java:680) |
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128 | Caused by: omero.ClientError: Call createSession() to login. |
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129 | at omero.client.getSession(client.java:490) |
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130 | at omero.model.DetailsI.<init>(DetailsI.java:50) |
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131 | at omero.model.DetailsI$1.create(DetailsI.java:27) |
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132 | at IceInternal.BasicStream.readObject(BasicStream.java:1517) |
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133 | at IceInternal.BasicStream.readPendingObjects(BasicStream.java:1739) |
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134 | at omero.api._IPixelsDelM.retrievePixDescription(_IPixelsDelM.java:513) |
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135 | at omero.api.IPixelsPrxHelper.retrievePixDescription(IPixelsPrxHelper.java:592) |
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136 | at omero.api.IPixelsPrxHelper.retrievePixDescription(IPixelsPrxHelper.java:564) |
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137 | at org.openmicroscopy.shoola.env.data.OMEROGateway.getPixels(OMEROGateway.java:3153) |
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138 | ... 9 more |
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139 | Exception in thread "AWT-EventQueue-0" |
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140 | |
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141 | 2013-02-06 11:19:10,883 ERROR [y.shoola.agents.imviewer.PlaneInfoLoader] (entQueue-0) State: 3Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data. |
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142 | Cannot load the plane info for pixels: 6070 |
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143 | at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:891) |
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144 | at org.openmicroscopy.shoola.env.data.OMEROGateway.loadPlaneInfo(OMEROGateway.java:6077) |
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145 | at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.loadPlaneInfo(OmeroImageServiceImpl.java:1005) |
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146 | at org.openmicroscopy.shoola.env.data.views.calls.PlaneInfoLoader$1.doCall(PlaneInfoLoader.java:78) |
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147 | at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) |
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148 | at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) |
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149 | at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) |
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150 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) |
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151 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276) |
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152 | at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) |
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153 | at java.lang.Thread.run(Thread.java:680) |
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154 | Caused by: Ice.CommunicatorDestroyedException |
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155 | at IceInternal.Instance.objectAdapterFactory(Instance.java:122) |
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156 | at Ice.ObjectPrxHelperBase.createDelegate(ObjectPrxHelperBase.java:997) |
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157 | at Ice.ObjectPrxHelperBase.__getDelegate(ObjectPrxHelperBase.java:946) |
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158 | at omero.api.IQueryPrxHelper.findAllByQuery(IQueryPrxHelper.java:318) |
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159 | at omero.api.IQueryPrxHelper.findAllByQuery(IQueryPrxHelper.java:292) |
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160 | at org.openmicroscopy.shoola.env.data.OMEROGateway.loadPlaneInfo(OMEROGateway.java:6075) |
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161 | ... 9 more |
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162 | State: 3Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data. |
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163 | Cannot load the plane info for pixels: 6070 |
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164 | at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:891) |
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165 | at org.openmicroscopy.shoola.env.data.OMEROGateway.loadPlaneInfo(OMEROGateway.java:6077) |
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166 | at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.loadPlaneInfo(OmeroImageServiceImpl.java:1005) |
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167 | at org.openmicroscopy.shoola.env.data.views.calls.PlaneInfoLoader$1.doCall(PlaneInfoLoader.java:78) |
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168 | at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) |
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169 | at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) |
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170 | at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) |
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171 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) |
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172 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276) |
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173 | at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) |
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174 | at java.lang.Thread.run(Thread.java:680) |
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175 | Caused by: Ice.CommunicatorDestroyedException |
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176 | at IceInternal.Instance.objectAdapterFactory(Instance.java:122) |
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177 | at Ice.ObjectPrxHelperBase.createDelegate(ObjectPrxHelperBase.java:997) |
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178 | at Ice.ObjectPrxHelperBase.__getDelegate(ObjectPrxHelperBase.java:946) |
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179 | at omero.api.IQueryPrxHelper.findAllByQuery(IQueryPrxHelper.java:318) |
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180 | at omero.api.IQueryPrxHelper.findAllByQuery(IQueryPrxHelper.java:292) |
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181 | at org.openmicroscopy.shoola.env.data.OMEROGateway.loadPlaneInfo(OMEROGateway.java:6075) |
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182 | ... 9 more |
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183 | Exception in thread "AWT-EventQueue-0" |
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184 | |
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