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root/trunk/OMERO.insight_Changelogs.txt

Revision 5418, 23.8 kB (checked in by jburel, 6 months ago)

Fixed regular expression problems.

Line 
1 OMERO.insight Project
2 ---------------------
3 
4  The OMERO.insight Project is a sub-project of the Open Microscopy Environment
5  Project (OME, http://www.openmicroscopy.org/) that focuses on delivering a
6  client for the visualization and manipulation of both image data and metadata
7  maintained at an OMERO server site. OMERO.insight is completely written in
8  Java.
9--------------------------------------------------------------------------------
10 Last update: 19/05/2008 (revision 5417)
11 Version: Beta 3rc4
12
13  - DataManager: Fixed various bugs. See tickets for details.
14
15--------------------------------------------------------------------------------
16 Last update: 12/05/2008 (revision 5401)
17 Version: Beta 3rc4
18
19  - Viewer: Modified rendering saving layout.
20  - DataManager: Added Search facility and Fixed various problems.
21  See tickets on track.
22--------------------------------------------------------------------------------
23 Last update: 20/04/2008 (revision 5366)
24 Version: Beta 3rc2
25
26  - Viewer: Fixed layout problem.
27  - DataManager: Fixed various problems. See tickets on track.
28--------------------------------------------------------------------------------
29 Last update: 14/04/2008 (revision 5350)
30 Version: Beta 3rc1
31
32  - New version of the client with data manager, browser and metadata browser
33   combined.
34--------------------------------------------------------------------------------
35 Last update: 15/12/2007 (revision 5176)
36 Version: For Beta 2.3 rc3
37
38  - MeasurementTool: Fixed bug in Intensity View
39  - Search: Improved UI to give better feedbacks.
40  - Search: Fixed bug when selecting image or annotation context.
41  - Compressed Image: Modified the way the compressed images are built to
42        improve the quality of the images in the split view.
43  - General: Bug fixing.
44  - HiViewer: Fixed bug when double-clicking on a tag.
45--------------------------------------------------------------------------------
46 Last update: 13/12/2007 (revision 5167)
47 Version: For Beta 2.3 rc1
48 
49  - Bug fixing
50  - General: Introduce tagging.
51  - General: Added Quick and Advanced Search
52  - Viewer: Fixed Split View bug when viewing compressed image.
53  - Viewer: Improve initialization sequence.
54  - Viewer: Synchronize viewers when copy and pasting from DataManager or
55                        HiViewer
56  - General: Improve Error handling.
57--------------------------------------------------------------------------------
58 Last update: 15/11/2007 (revision 5153)
59 Version: For Beta 2.3
60 
61  - Viewer: Introduce notion of Preferences (only valid during the session).
62  - Login and Viewer: Add compression
63  - Viewer: Option to view images using other users settings
64--------------------------------------------------------------------------------
65 Last update: 25/10/2007 (revision 5106)
66 Version: Beta 2.2 rc5
67 
68  - Viewer: Fixed problem in grid view when the color model is grey scale.
69  - Lib: Added jboss-remote to the path.
70--------------------------------------------------------------------------------
71 Last update: 15/10/2007 (revision 5069)
72 Version: Beta 2.2 rc4
73 
74  - Measurement tool: Add Intensity view across time and z-sections.
75  - Measurement tool: Fixed remaining bugs.
76  - DataManager and HiViewer: Add option to resets defaults across collection
77        of images.
78--------------------------------------------------------------------------------
79 Last update: 09/10/2007 (revision 5046)
80 Version: Beta 2.2 rc3
81 
82  - Viewer: Fixed refreshing problem after annotating ticket #397
83  - Viewer: Save as. Modified layout and names of saving options ticket #398
84  - DataManager: Fixed refresh problem ticket #399
85  - Viewer: Modify closing and saving sequence.
86  - Measurement tool: Bugs fixing.
87  - Annotator: Display scrollbar when the text entered is too long.
88--------------------------------------------------------------------------------
89 Last update: 04/10/2007 (revision 5035)
90 Version: Beta 2.2 rc2
91 
92  - Viewer: Fixed Image grid bug see ticket #389 and ticket #390
93  - Viewer: Fixed play movie bug see ticket #392
94  - Renderer: Fixed slider location problem see ticket #391
95  - DataManager and HiViewer: Fixed copy paste rnd settings bug see ticket #393
96  - Viewer: Add item to local history if "cut and paste" action see ticket #394
97  - Viewer: Display local history when launching the renderer see ticket #395
98  - Viewer: Saving on close see ticket #396
99--------------------------------------------------------------------------------
100 Last update: 01/10/2007 (revision 5030)
101 Version: Beta 2.2 rc1
102 
103  - HiViewer, DataManager. Options to copy and paste settings.
104  - Measurement Tool: Modify the ROI Manager. Bug fixing
105  - Viewer: Options to modify the magnification factor in split view.
106  - Lib: JBoss lib update
107--------------------------------------------------------------------------------
108 Last update: 11/09/2007 (revision 5010)
109 Version: Beta 2.2
110 
111  - Container: Fixed OutofMemory problem while caching images.
112  - Measurement Tool: Fixed bug related to the index of ROI.
113  - UI: Fixed 2 knobs sliders mouse moved (cf. ticket#367)
114--------------------------------------------------------------------------------
115 Last update: 05/09/2007 (revision 5008)
116 Version: Beta 2.2
117 
118  - TreeViewer: Improved smart folders in images tabbedPane.
119  - TreeViewer: Fixed Refresh problem related to smart folders (cf. ticket #362)
120  - Viewer: Improved category/tagging editor. Introduce a new way of using
121                        categoryGroup i.e. similar to Tag Bundles.
122  - Viewer: Added way auto complete feature.
123--------------------------------------------------------------------------------
124 Last update: 31/08/2007 (revision 5004)
125 Version: Beta 2.2
126 
127  - Measurement Tool: Bugs fixing.
128  - Viewer: Added option create/add image to categories. To declassify the
129                        image and to browse the category (cf. ticket #359).
130  - ROIAnalyser: Added controls to be sure that the shape is contained in
131                                the bounds of a given plane.
132  - Gateway: Added new methods to retrieve categories.
133--------------------------------------------------------------------------------
134 Last update: 21/08/2007 (revision 4984)
135 Version: Beta 2.2
136 In this build, try to reduce the number of windows.
137 
138 - MeasurementTool: Fixed bugs. Better Error handling.
139                                        Changed default UI of Figures.
140 - TreeViewer: After selecting a new user, display the users data in the same
141                                window.
142 - TreeViewer: Images Explorer TabbedPane, use smart folders to filter images.
143 - Viewer: Merge Viewer window and Renderer Window
144 - Viewer: Introduce the concept of local rendering history. Allow users
145                        to undo settings step by step
146 - Viewer: Introduce the notion of "Copy and Paste" rendering settings
147 
148--------------------------------------------------------------------------------
149 Last update: 01/08/2007 (revision 4971)
150 Version: Beta 2.1
151 
152 - Measurement Tool: Introduction of the measurement tool
153 - Viewer, TreeViewer: Turn on option to download the archived images
154 
155--------------------------------------------------------------------------------
156 Last update: 22/06/2007 (revision 4938)
157 Version: Beta 2
158 
159 - General: Fixed last remaining bugs before release.
160 
161 -------------------------------------------------------------------------------
162 Last update: 05/06/2007 (revision 4903)
163 Version: Beta 2
164 
165 - HiViewer: Fixed layout problem
166 - Rendering: Turn on caching
167 - General: Fixed last remaining bugs before releasing.
168 
169 -------------------------------------------------------------------------------
170 Last update: 29/05/2007 (revision ??)
171 Version: Beta 2
172 
173 - Annotator: Fixed scroll Bar position
174 - Viewer: Add new features to support various saving options.
175 - General: Fixed last remaining bugs before releasing.
176 
177--------------------------------------------------------------------------------
178 Last update: 08/05/2007 (revision ??)
179 Version: Beta 2
180 
181 Changes:
182 - General: UI cleaning.
183 - Viewer: Add Magnified lens on image in Annotate Panel
184 - Viewer: Add option to save split channel in Grey scale mode.
185 - Annotator: Review implementation of the Annotator to allow multiple
186                          annotations, delete multiple annotations.
187 - HiViewer: Relayout the node with images when resizing.
188 - HiViewer: Allow multi selection in TreeView. 
189 
190--------------------------------------------------------------------------------
191 Last update: 01/05/2007 (revision 4798)
192 Version: Beta 2
193 
194 Changes:
195 - General: UI cleaning.
196 - Viewer: Add Magnified lens on image in Annotate Panel
197 - Viewer: Add option to save split channel in Grey scale mode.
198 - Annotator: Review implementation of the Annotator to allow multiple
199                          annotations, delete multiple annotations.
200 - HiViewer: Relayout the node with images when resizing.
201 - HiViewer: Allow multi selection in TreeView.
202 
203--------------------------------------------------------------------------------
204 Last update: 24/04/2007 (revision 4782)
205 Version: Beta 2
206 
207 Changes:
208 - General: UI cleaning.
209 - Viewer: Smart selection of the split option.
210 - Viewer: Allow to save the magnified lens image and the lens+split channels.
211 - Viewer: Select the z-section and timepoint by mousing over the image.
212 
213--------------------------------------------------------------------------------
214 Last update: 16/04/2007 (revision 4780)
215 Version: Beta 2
216 
217 Changes:
218 - TreeViewer: Fixed bug when switching user.
219 - Viewer: Added new tabbed pane. Grid view.
220 
221--------------------------------------------------------------------------------
222 Last update: 26/03/2007 (revision 4779)
223 Version: Beta 2
224 
225 Changes:
226 - Annotator: Create a new component to centralize the annotation mechanism
227 for a given image or dataset. New layout, allow user to view the annotation
228 history.
229 - TreeViewer, HiViewer: Replace annotation code by the annotator component.
230 - Fix bug related to server management.
231 - Viewer: Modify layout. Use tabbed pane so that user can annotate the image
232 from the Viewer.
233 
234 
235--------------------------------------------------------------------------------
236 Last update: 15/03/2007 (revision 4773)
237 Version: Beta 2
238 
239 Changes:
240 - DataManager: Allows user to view other people data.
241 - DataManager: Added orphaned containers to the list in hierarchy i.e.
242 datasets (resp. categories) not linked to a project (resp. category group)
243 - DataManager: Allow user to manage his/her profile and add/remove servers when
244 logged in.
245 - DataManager/HiViewer: Allows user to annotate all images in a container by
246 selecting the container (Need to implement call server side)
247 - HiViewer: Modified layout. Work area (used to be clipBoard) is vertical.
248 - DataManager/HiViewer: Fixed annotation bug i.e. if image or dataset annotated
249 by another user, couldn't annotate the image (dataset) if we first view
250 the annotation.
251 - Viewer: Center the image.
252 - Viewer: Improve location of the lens/autoscrolling
253 - Viewer: Renderer window, fixed sliders/histogram layout issue.
254 - Screen login: Improve Server selection component.
255--------------------------------------------------------------------------------
256Last updated: 09/02/2007
257Version: Beta 1.1
258
259Changes:
260 - Container: Send error with error message. An non-valid address was previously
261  used. cf. ticket#238
262 - Container/Viewer: Handle timeout problems of Thumbnail service and rendering
263 service. cf. ticket#235
264 - Viewer: Iconify/de-iconify issue cf. ticket#236
265--------------------------------------------------------------------------------
266Last updated: 23/01/2007
267Version: M3 Beta 1
268
269Changes:
270 - TaskBar: Remove menu when no viewer of hiviewer.
271 - SlpashScreen: New splashscreen. Options to manage the existing servers.
272 - UI components: set default button when a new frame is displayed.
273--------------------------------------------------------------------------------
274Last updated: 15/01/2007
275Version: M3 Beta 1
276
277Changes:
278 - DataManager: Fixed sized problem when loading image Data.
279 - DataManager: Display a default thumbnail when editing an image.
280 - HiViewer: Fixed divider location problem when removing clipBoard.
281 - Gateway: Retrieved thumbnails from updated Thumbnail service.
282
283--------------------------------------------------------------------------------
284Last updated: 09/01/2007
285Version: M3 Beta 1
286
287Changes:
288 - DataManager: Fixed lost of focus problem when creating a new object.
289 - HiViewer: Enhancement of the Export as funtion.
290 - Agents: Fixed minor UI issues.
291 
292--------------------------------------------------------------------------------
293Last updated: 14/12/2006
294Version: M3 Beta 1
295Known Issues: Refresh, only the active window is refreshed when a change happens
296                          e.g. if the user annotates an Image from the DataManager,
297                          if the HiViewer is up, the HiViewer won't be updated.
298Changes:
299 - Gateway: Add controls for out of synch objects.
300 - HiViewer: implemented a proper refresh function.
301 - DataManager: Fixed bug when modified data and switching to a new object
302                                before saving.
303 - DataManager: Unified toolTips.
304 - HiViewer: Nofitied component when dataObject is saved. (Bug)
305 - Gateway: Wrap server exceptions.
306 - Viewer: Added option to modify the color of the scale bar.
307 - Viewer: Added control when setting the size of the scale bar.
308 - HiViewer: Added option to display the full/partial name of images in
309             treeView.
310 
311--------------------------------------------------------------------------------
312Last updated: 12/12/2006
313Version: M3 Beta 1
314Changes:
315 - SplashScreen: Update SplashScreen image.
316 - RenderingService: Handle exception.
317 - Viewer: Handle Exception if an error occured while rendering a new image.
318 - DataManager: Fixed the refresh method for the ImageExplorer.
319 - DataManager: Added option to display the full/partial name of images.
320 - HiViewer, Viewer: Fixed problem when attaching menu listeners.
321 - Agents enhancement: Modified tooltips.
322 
323--------------------------------------------------------------------------------
324Last updated: 11/12/2006
325Version: M3 Beta 1
326Changes:
327 - Agents: Refactored code to annotate and classify several objects at the same
328           time.
329 - Agents: Unified names and icons.
330 - Agents: Modified location of saveButton for easy access.
331 - Container: Sets the noise reduction to false by default.
332 - Container: Added service to connect via http.
333 - Service: Option to send error reports or comments to developers.
334 - DataManager: Fixed problem in editor to load thumbnail regardless of the
335                           selected pane.
336 - HiViewer: Fixed tabbed pane selection bug.
337 - HiViewer: Option to magnify the zoomed thumbnail using the mouse wheel.
338 - HiViewer: Fixed problem when mouse over node and displayin data related
339                         to the selected node. (cf. Usability Test 8, ID 8.5).
340 - UI util: Fixed treeCheckNode layout problem. The problem seems to appear
341                        on Windows.     
342                       
343--------------------------------------------------------------------------------
344Last updated: 27/11/2006
345Version: M3
346Changes:
347 - HiViewer: Fixed bug when doing layout of the zoomed nodes. ticket #517
348 - Viewer:      Viewer: scalebar not in viewport when image zoomed in viewer
349                (cf. Usability Test 6, ID 6.27 Ticket #516)
350               
351--------------------------------------------------------------------------------
352Last updated: 15/11/2006
353Version: M3
354Changes:
355 - Viewer: Added "Fit to window" (cf. Usability Test 6, ID 6.26 ticket#500)
356 - HiViewer: Added classification pane to the clipBoard
357                        (cf. Usability Test 6, ID 6.24 ticket#515)
358 - DataManage: Editor. Remember the selected panes in editor
359                                (cf. Usability Test 6, ID 6.22 ticket#514)
360 - DataManager:  Added Button to toolbar to create a top container node
361                        i.e Project/Category (cf. Usability Test 5, ID 5.10 ticket #481).
362 - HiViewer: Added "sort by" option. (cf. Usability Test 5, ID 5.3 ticket #513).
363 - DataManager: Added "sort by" option on all nodes.
364                (cf. Usability Test 6, ID 6.18 and 6.19
365                cf. Usability Test 5, ID 5.3 ticket #497).
366 - Viewer:      Modified name of the "revert" button. Before modifying the settings
367                a "Yes/No" dialog is brought up on screen.
368                (cf. Usability Test 6, ID 6.12 ticket #495).
369 - Viewer:      Added double-clicking option to interact with Color picker
370                (cf. Usability Test 6, ID 6.9 ticket #493).
371 - Viewer:      Fixed location of the lens issue. (cf. Usability Test 6, ID 6.8
372                ticket #492).
373 - Viewer:      Fixed lens menu problem. (cf. Usability Test 6, ID 6.7 and 6.13).
374 - DataManager: Modified Editor. Pop up a dialog when the user wants to create
375                                a new object and other modifications. See ticket #481 for
376                                details (cf. Usability Test 5, ID 5.10, 5.11, 5.12)
377 - DataManager: Fixed bug if the inserted date not valid when trying to sort the
378                                nodes.
379 - DataManager/HiViewer: Added search history in Finder
380                                (cf. Usability Test 5, ID 5.26) (ticket #483)
381 - HiViewer:    Add new Layout Flat layout
382                                (cf. Usability Test 5, ID 5.5bis, ticket #485)
383 - HiViewer:    Added "Remove options".
384 - HiViewer:    Added toolBar to show/hide clipBoard or treeView.
385                                (cf. Usability Test 5, ID 5.22 and Usability Test 6, ID 6.10)
386                                (ticket #489)
387 - HiViewer:    Fixed NullPointerException when poping menu from floating
388                                thumbnail.
389 - Container:   Fixed bug when trying to remove a category from a CategoryGroup.
390 - Container:   Window menu is now available for any TopWindow requesting it.
391                (cf. Usability Test 5, ID 5.5, ticket #484)
392               
393--------------------------------------------------------------------------------
394Last updated: 06/11/2006
395Version: M3
396Changes:
397 - DataManager: Removed selected node in tree if the selectedDisplay is null.
398 - DataManager: Fixed state issue when showing the classifier widget.
399                                Modified the classification paths call to display
400                                all the available categories (ticket #477). TODO: Filter the
401                                paths returned.
402 - DataManager: Added the "cutAndPaste" option (ticket #476)
403 - DataManager/HiViewer: Selects nodes using the up/down arrows (ticket #469)
404 - DataManager: Image options interaction. Right click image options in Tree
405                                view not working unless the image is left clicked first
406                         (cf. Usability Test 4, ID 4.6) (ticket #474)
407 - Viewer: Fix scale bar issue (cf. Usability Test 4, ID 4.4) (ticket #470)
408 - Viewer: Track channels selection history when switching between
409                         color model. (cf. Usability Test 4, ID 4.3) (ticket #471).
410 - Viewer: Fixed bug when right clicking on a channel button
411                         (cf. Usability Test 4, ID 4.2).
412 - Container: Release Versioning. Click on "Help>Software Update" in
413                         DataManager (cf. Usability Test 4, ID 4.8)(ticket #472).
414 - HiViewer: Doesn't set the minimum size of the ClipBoard and
415                         Minimize the clipBoard when double-clicking on the splitPane
416                         divider (cf. Usability Test 4, ID 4.5 and 4-14).
417 - HiViewer: Displays the name of the selected node when the mouse exits.               
418 - Container: Fixed problem when trying to declassify/classify or
419                         copyAndPaste (ticket #475)
420
421--------------------------------------------------------------------------------
422Last updated: 30/10/2006
423Version: M3
424Changes:
425 - Viewer: UI enhancements.
426 - RenderingProxy: Modified the data retrieval (ticket #473).
427
428--------------------------------------------------------------------------------
429Last updated: 20/10/2006
430Version: M3
431Changes:
432 - Viewer: Selects z-section or timepoint using the wheel.
433 - Viewer: Set the size of the viewer to 90% of the screen size if the
434                   displayed image is too big.
435 - Container: The last selected server will be always the first choice
436                          when the user returns.
437 - Agents: Modified location of the new HiViewer and Viewers.
438 - DataManager: Added controls before displaying the name of the person who
439                        annotated an object. (Tempo solution).
440 - DataManager: Added the option to save the edited data before switching to a
441                   new item.
442 - Viewer: Added SaveAs item in the Controls Menu.
443 - Viewer: Added popup menu when user right click on a channel.
444 - RenderingProxy: Sets the color of the channels depending on the emission
445                   wavelength. Feature will be implemented server side.
446                   (This is a tempo solution).
447
448---------------------------------------------------------------------------------
449Last updated: 17/10/2006
450Version: M3
451Changes:
452 - Container:   Memorize servers when installing a new version.
453 - DataManager: Fixed bug when classifying.
454 - DataManager: Notified user when classifying.
455
456--------------------------------------------------------------------------------
457Last updated: 16/10/2006
458Version: M3
459Changes:
460 - DataManager: Added Copy and Paste option.
461 - DataManager: Fixed bug when classifying an image.
462 - DataManager: Fixed bug when refreshing the tree, if no nodes were already
463                                loaded,the tree isn't reloaded and no longer displayed.
464 - DataManager: Fixed the following bug, When images displayed in the
465                                ImageExplorer and the filtering window is brought up then close.
466                                If the user double-clicks on a displayed image, we could see the
467                                image.
468 - DataManager: Options to remove more than one object at a time.
469 - HiViewer:    Add a flag indicated that the image has been annotated or
470                                classified on the magnified image.
471 - Viewer: UI enhancement of the rendering settings widget.
472
473--------------------------------------------------------------------------------
474Last updated: 09/10/2006
475Version: M3
476Changes:
477 - DataManager: Fixed sizing issue of the editor.
478 - Viewer: UI enhancement of the Renderer widget.
479 - HiViewer: Fixed bug when classifying more than one image.
480
481--------------------------------------------------------------------------------
482Last updated: 07/10/2006
483Version: M3
484Changes:
485 - DataManager: Fixed "goInto" problem.
486 - DataManager: Tree view: display a shorter version of the image's name
487                                and not the full name stored in DB.
488 - HiViewer:    Display a shorter version of the image's name
489                                and not the full name stored in DB.
490 - HiViewer:    Added Magnification. Option to turn in/off. Double-click on
491                                thumbnail (when magnification is off) loads the ImViewer.
492                                When magnification is on, option to pin the thumbnail on screen.
493 - Viewer:      Fixed layout and position of the Renderer.
494       
495--------------------------------------------------------------------------------
496Last updated: 05/10/2006
497Version: M3
498Changes:
499 - DataManager: Fixed bug in Finder i.e. Match the case.
500 - DataManager: Display a partial name of the image name in the tree.
501 - Container:   User now selects and initializes the server from the
502                                plashScreen.The previously selected servers are stored on the
503                                computer.
504 - DataManager: Fix group level option.
505 - Viewer:      Bug fixing.
506 - Container:   RenderingProxy, fixed saturation problem.
507 - HiViewer:    Magnification On/Off i.e. when the user mouses over a node,
508                                a zoomed version of the thumbnail is displayed.
509
510--------------------------------------------------------------------------------
511Last updated: 02/10/2006
512Version: M3
513Changes:
514 - Container:   Display options dialog before closing the application.
515 - DataManager: Added "Go Into" functionality i.e. from the main tree, the user
516                has the possibility to display the content of a container in a
517                second tree.
518 - DataManager: Fixed various bug related to the fact that we are no longer
519                                using the modal dialog when loading data (See ticket #386, #387)
520 - DataManager: Modified the organization of the menus (See ticket #388).
521 - DataManager: Modified the "Refresh" implementation (See ticket #392).
522 - DataManager: Modified layout of the finder and fixed bug (See ticket #390).
523 - DataManager: Set the font of the found nodes (cf. Finder) to Bold.
524 - Viewer:      Added option to size the Scale Bar (See ticket #389).
525
526--------------------------------------------------------------------------------
527Last updated: 25/09/2006
528Version: M3
529Changes:
530 - DataManager: Fixed bug #363 (delete top container) and #364
531                                (CategoryGroup creation).
532 - DataManager: Added toolbar to the data manager that implements the options
533                                of the popupmenu.
534 - DataManager: Added status bar, and candy buttons.
535 - Viewer:      Changed name of the item "Show scale bar".
536 - Viewer:      Added color picker and coloured button to select channels.
537 - Renderer:    Modified name of the main panel.
538
539--------------------------------------------------------------------------------
540Last updated: 15/09/2006
541Version: M3
542Changes:
543 - DataManager: UI enhancement.
544 - Viewer:      UI enhancement.
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