Timeline
03/17/10:
- 20:25 Ticket #2018 (Auto-upload 'built-in' scripts) created by
- The server needs to upload the following scripts when it is installed (or …
- 19:53 Changeset [6314] by
- Fixing test image import
- 19:52 Changeset [6313] by
- merging trunk@6208:6310
- 19:16 Changeset [6312] by
- tweaking tests
- 19:16 Changeset [6311] by
- Annotation creation again sets world read on both ann and link objs.
- 17:42 Ticket #1991 (Write up an OMERO.tables code examples page) closed by
- 17:36 Changeset [6310] by
- Added listObjects method now returns non-importable files. Some deprecated …
- 16:55 Changeset [6309] by
- Fixing missing import.
- 16:30 Ticket #1982 (Check scale bars are correct) closed by
- fixed: Made several figures of ROI-splitView and SplitViewFigure?, of different …
- 16:16 OmeroTablesCodeExamples edited by
- (diff)
- 15:59 Changeset [6308] by
- fix #1957 - job handling is now cleaner (also see #1857) Includes new …
- 15:59 Ticket #1957 (Correct Job.message and status usage) closed by
- fixed: (In [6308]) fix #1957 - job handling is now cleaner (also see #1857) …
- 15:43 Ticket #1928 (FAQ - Update Questions) closed by
- 15:15 OmeroTablesCodeExamples edited by
- (diff)
- 15:09 OmeroTablesCodeExamples edited by
- (diff)
- 15:07 Changeset [6307] by
- Handle cases where no user specified annotations have been given. (See …
- 14:32 Ticket #1942 (Reconfigure build to allow repositories to access importer libs) closed by
- fixed
- 14:21 Changeset [6306] by
- Added listObjects method before removing deprecated methods. Import events …
- 13:38 Changeset [6305] by
- Fix for when chimera download overwrites existing files
- 13:35 Changeset [6304] by
- Change default path of test-classes folder metadata-validator script. (See …
- 13:19 Changeset [6303] by
- Open In Chimera script. Closes #1995
- 13:19 Ticket #1995 (Open in Chimera) closed by
- fixed: (In [6303]) Open In Chimera script. Closes #1995
- 12:58 Ticket #1946 (Add update functionality to omero tables) closed by
- fixed: Closing. Update works for basic column types. Other work on the update …
- 12:36 Ticket #2017 (BUG: System group not on the list) created by
- Not to list "system" as one of the available groups for adding users to.
- 12:35 Ticket #2016 (Experimenter form group picker) created by
- Experimenter form needs new group picker panel. Would be nice to only …
- 12:32 Ticket #2010 (BUG: findByString uses LIKE) closed by
- fixed
- 12:30 Changeset [6302] by
- see #1321,#1952 - Removing Params.name. Redundant with map key.
- 12:30 Ticket #1952 (Add script author info) closed by
- fixed: (In [6301]) fix #1952 - Adding authors, institutions, etc. to …
- 12:30 Changeset [6301] by
- fix #1952 - Adding authors, institutions, etc. to JobParams
- 12:30 Changeset [6300] by
- see #2011 - removing CHANGE_GROUP after discussion
- 12:30 Changeset [6299] by
- fix #2010 - changing to Restrictions.eq
- 12:29 Ticket #2015 (BUG: Required fields) created by
- - Only fields that are not-null in the database should be 'required' at …
- 12:27 Ticket #2014 (Browse data by Administrator) created by
- Administrator should be able to log in to any group (and browse data) …
- 12:24 Ticket #2013 (Warnings for sys-admin) created by
- Sys-admin needs to create a group before creating users. Clear messages …
- 12:21 Ticket #2012 (WebAdmin improvement) created by
- * Users will still need to be in a group, so the admin will need to create …
- 11:37 Ticket #2011 (System admin workflow) created by
- Changes to the admin workflow in setting up groups and users. Main …
- 11:35 Changeset [6298] by
- Change default path for metadata-validator script. (See #1981)
- 11:01 Ticket #2010 (BUG: findByString uses LIKE) created by
- IQuery.findByString() uses Restrictions.like internally. According to …
- 10:23 Changeset [6297] by
- Fix Eclipse CLASSPATH to allow work on repository services.
- 08:08 Ticket #2009 (READ-ONLY / READ-LINK) created by
- This ticket is about changes in OMERO.web related to the user feedback …
- 07:32 Ticket #1929 (Permissions demo (Sprint 4)) closed by
- fixed
- 07:30 Ticket #1827 (Annotation support) reopened by
03/16/10:
- 18:32 Changeset [6296] by
- Properly check graph criticality against the Pixels set owner. Test cases …
- 16:54 OmeroTablesCodeExamples edited by
- (diff)
- 16:30 Changeset [6295] by
- Export of images in EM formats without needing EMAN2 on the client. Closes …
- 16:30 Ticket #1986 (Make omero2em.py server-side) closed by
- fixed: (In [6295]) Export of images in EM formats without needing EMAN2 on the …
- 16:27 Changeset [6294] by
- Download OriginalFile? method
- 16:19 Changeset [6293] by
- Resolve a problem where an extra, potentially bogus, Pixels set owner …
- 16:08 OmeroTablesCodeExamples edited by
- (diff)
- 16:07 OmeroTablesCodeExamples edited by
- (diff)
- 16:06 OmeroTablesCodeExamples created by
- 15:03 Changeset [6292] by
- Handle multi-user rendering settings creation, application and saving. …
- 15:03 Ticket #2008 (Bug: Settings reset on another user's image does not work) closed by
- fixed: (In [6292]) Handle multi-user rendering settings creation, application and …
- 14:45 Changeset [6291] by
- see #1840 - fixing test
- 14:45 Changeset [6290] by
- see #1857 - improving process callback (also see #1676)
- 13:53 Ticket #1896 (XML: Plate Acquisition - update) closed by
- 12:42 Ticket #2008 (Bug: Settings reset on another user's image does not work) created by
- When attempting to reset your rendering settings of another user's image, …
- 12:37 Changeset [6289] by
- Playground for web apps that need a stable base but require the latest web …
- 12:25 Changeset [6288] by
- update for r6286
- 12:22 Ticket #1931 (BUG: Middle name not populated) closed by
- 12:22 Changeset [6287] by
- this fixes #1931
- 12:05 Ticket #1958 (Checkout omeroweb_sandbox branch) closed by
- 12:04 Ticket #1925 (Agilo integration) closed by
- 12:04 Ticket #1732 (UI usability improvements) closed by
- 12:04 Changeset [6286] by
- #1732
- 09:51 Ticket #1954 (BUG: XSLT AcquiredPixels & Channel ID in 2008-09-to-2009-09) closed by
- 09:45 Changeset [6285] by
- see #2007 - workaround for IcePy communicator leak original-svn-id: …
- 09:45 Changeset [6284] by
- see #1983 fixed original-svn-id: file:///home/svn/omero/trunk@6241 …
- 09:43 Changeset [6283] by
- see #2007 - workaround for IcePy communicator leak
- 09:08 Ticket #2007 (BUG: python communicator leak) created by
- Report from Chris: […] seems to leave a CommunicatorI instance in the …
- 08:01 Ticket #2006 (BUG: list script input fails with internal exception) closed by
- fixed: r6282 should fix this up, Will.
- 08:00 Changeset [6282] by
- fix #2006 - omero.scripts.validate_inputs() improvements
- 07:59 Ticket #2006 (BUG: list script input fails with internal exception) created by
- […]
03/15/10:
- 18:14 Ticket #1832 (Bug: OME-XML out of memory exception) closed by
- fixed: (In [6281]) Updating to bio-formats:r6000 (Fixes #1832 and #2005)
- 18:14 Ticket #2005 (Bug: Issues with ScanR channel pick up) closed by
- fixed: (In [6281]) Updating to bio-formats:r6000 (Fixes #1832 and #2005)
- 18:14 Changeset [6281] by
- Updating to bio-formats:r6000 (Fixes #1832 and #2005)
- 18:13 Changeset [6280] by
- Updating to bio-formats:r6000 (Fixes #1832 and #2005)
- 18:11 Ticket #2005 (Bug: Issues with ScanR channel pick up) created by
- More details here: …
- 16:23 Ticket #1895 (XML: Plate Acquisition - structure) closed by
- fixed
- 15:49 Ticket #2004 (Remove `procs` package from server) created by
- The ome.services.procs package is wholly replaced by the background …
- 15:47 Ticket #1840 (Processor : remove JobNotification) closed by
- fixed
- 15:36 Changeset [6279] by
- OmeroCli : Adding bin/omero config edit Warning: uses `bin/omero config …
- 15:36 Changeset [6278] by
- see #1783 - Making CHANGE_ME private by default (again)
- 15:36 Changeset [6277] by
- fix #1840 - Removing JobNotification
- 15:28 Ticket #1839 (Processor : on session close, remove session.) closed by
- invalid: unfortunately don't remember what this was about.
- 14:14 Ticket #2003 (Simplify InteractiveProcessor usage) created by
- r6273 shows the difference between IScript.runScript and …
- 14:03 Ticket #2002 (Improve CLI script launch functionality) created by
- […] or […]
- 13:37 Ticket #2001 (Integrate group login into `bin/omero login`) created by
- Currently, the current group is not specified on the command-line. * …
- 13:32 Changeset [6276] by
- temp fix for logging in without pytables installed - should not ignore …
- 12:46 Ticket #2000 (Improve session manager recovery after db lockup) created by
- 12:24 Changeset [6275] by
- Implementation and test cases for read-write group thumbnail semantics. …
- 12:24 Ticket #1996 (Fix read-write group thumbnail retrieval) closed by
- fixed: (In [6275]) Implementation and test cases for read-write group thumbnail …
- 12:20 Changeset [6274] by
- see #1857 - fixing notification from usermode processor
- 11:55 Ticket #1999 (Properly handle script outputs) created by
- * Save ValidationException from bad script outputs * allow unregistered …
- 11:54 Ticket #1998 (Allow reusing last login without any CLI arguments) created by
- […]
- 11:36 Ticket #1997 (Add 'profile' to support direct use of Ice.Default.Locator) created by
- Either via --Ice.Config or a similar mechanism, it should be possible to …
- 11:11 Changeset [6273] by
- see #1321 - Fixing runHelloWorld.py
- 11:04 Ticket #1996 (Fix read-write group thumbnail retrieval) created by
- Read-write group thumbnail retrieval is broken with the permissions …
- 09:47 Changeset [6272] by
- OMERO4.2-DEV__1 db scripts
- 09:46 Ticket #1995 (Open in Chimera) created by
- Any image can be downloaded as a series of mrc files and opened in …
- 09:43 Ticket #1994 (Rationalise API for PublicRepository) created by
- The number of file listing methods in the API has multiplied several fold …
- 09:38 Changeset [6271] by
- fix #1944 - Adding initial group.py plugin to go along with user.py …
- 09:38 Ticket #1944 (Move omero/adduser.py to plugin) closed by
- fixed: (In [6271]) fix #1944 - Adding initial group.py plugin to go along with …
- 09:38 Ticket #1935 (bin/omero login should cleanup sessions) closed by
- fixed: (In [6270]) fix #1935 - bin/omero sessions clear now closes all sessions
- 09:38 Changeset [6270] by
- fix #1935 - bin/omero sessions clear now closes all sessions
- 08:22 Changeset [6269] by
- fix #1321 - Various fixes and demo for testing.
- 08:22 Ticket #1321 (Improve script params handling) closed by
- fixed: (In [6269]) fix #1321 - Various fixes and demo for testing.
- 08:22 Changeset [6268] by
- OMERO4.2-DEV__1 includes Roi.ns, Image.mimetype, etc.
- 08:22 Changeset [6267] by
- see #1321 - Improved params, validation, demo and various other fixes …
- 08:22 Changeset [6266] by
- see #1321 - Added omero.rtypes.wrap
- 08:22 Ticket #1993 (BUG: list output param breaks script) closed by
- fixed: (In [6265]) fix #1993 - Allowing Object.class and fixing toRType for …
- 08:22 Changeset [6265] by
- fix #1993 - Allowing Object.class and fixing toRType for lists and maps
- 08:22 Changeset [6264] by
- see #1321 - Addition of omero.model.ParseJob subclass and …
- 08:22 Changeset [6263] by
- see #1321 - Now uploading stdout/stderr for parse jobs
- 08:22 Changeset [6262] by
- see #1321 - Adding bin/omero script demo for testing (also work on …
- 08:22 Changeset [6261] by
- see #1321 - reducing invocations to parseJob
- 08:22 Changeset [6260] by
- see #1321 - Added omero.rtypes.unwrap for use in inputs/outputs
- 08:22 Ticket #1977 (BUG : Stackoverflow errors on recursive maps) closed by
- fixed: (In [6259]) fix #1977 - better handling of recursive maps & collections
- 08:22 Changeset [6259] by
- fix #1977 - better handling of recursive maps & collections
- 08:22 Changeset [6258] by
- see #1321 - passing JobParams into Processor.processJob()
- 08:22 Changeset [6257] by
- see #1321 - Adding bulk session getters for inputs/outputs
- 08:21 Changeset [6256] by
- see #1321 - improving error handling for safeRunnableCall
- 08:21 Changeset [6255] by
- see #1321 - converting other ScriptI methods to safeRunnableCall
- 08:21 Changeset [6254] by
- see #1321 - work on omero.scripts.Type incl. allowing Params
- 08:21 Changeset [6253] by
- see #1321 - initial work on bin/omero script params command
- 08:21 Changeset [6252] by
- see #1321 - Adding min, max, etc to Params
- 08:21 Changeset [6251] by
- see #1321 - initial storage of JobParams as original file and ScriptI …
03/12/10:
- 22:21 Changeset [6250] by
- Set ImportCandidates? depth to 0 to return only importable files from the …
- 21:28 Ticket #1993 (BUG: list output param breaks script) created by
- […] produces: […] and after turning off consistency checks: …
- 21:25 Ticket #1992 (Move to READ-ONLY / READ-LINK rather than READ-WRITE) created by
- See #1929 and [ https://trac.openmicroscopy.org.uk/shoola/ticket/1212 …
- 16:08 Ticket #1949 (Poster for Crief Hydro) closed by
- 15:33 Ticket #1991 (Write up an OMERO.tables code examples page) created by
- 14:43 Ticket #1844 (CTF correction by EMAN2) closed by
- fixed: (In [6249]) Additional CTF parameters. Closes #1844.
- 14:43 Changeset [6249] by
- Additional CTF parameters. Closes #1844.
- 13:17 Changeset [6248] by
- commit for JM: added controls and tmp solution to fix mismatch between …
- 12:13 Ticket #1990 (BrainScans: Implement Brain Atrophy Algorithm) created by
- As a first test for collaborating with Ninewells we will implement the …
- 12:00 Changeset [6247] by
- Fixed returning non-image files, see #1799
- 11:05 Changeset [6246] by
- CTF correction script, using the EMAN2 e2ctf.py command line. #1844.
- 10:30 Changeset [6245] by
- Script util methods for creating new images.
03/11/10:
- 19:46 Ticket #1819 (Define list of ome-xml and ome-tiff examples needed) closed by
- 16:26 Ticket #1973 (BUG: Base Date Query not always returning correct results) closed by
- 15:45 Ticket #1989 (BUG: Updating group not change the permissions) closed by
- fixed
- 15:43 Changeset [6244] by
- fixes #1989
- 15:41 Ticket #1989 (BUG: Updating group not change the permissions) created by
- When administrator/owner was trying to update group, permissions was not …
- 15:38 Changeset [6243] by
- Returns import candidates, addresses untasked part of #1799; Fuller …
- 15:28 Ticket #1988 (Deal with errors and events from ImportCandidates) created by
- Any errors need to be passed back to the client. ImportableFiles? should …
- 15:27 Ticket #1744 (Implement OMERO.tables history table for importer) closed by
- fixed
- 15:21 Ticket #1987 (Add details to returned Image objects) created by
- A registered image when returned should probably included the pixels …
- 14:01 WorkPlan/ImporterServerSideHistory edited by
- (diff)
- 13:58 Changeset [6242] by
- Additional changes to build. See #1942
- 13:02 Ticket #1986 (Make omero2em.py server-side) created by
- Move the dependency on EMAN2 to the server and have the scripting service …
- 12:51 Ticket #1985 (FLIM: ROI tagging, storage) created by
- The Flim workflow requires that the ROI be stored on the server and have …
- 12:36 Ticket #1984 (FLIM: Visualisation) created by
- 1. Generate the Heatmaps and upload/attach in OMERO 1. Generate the …
- 12:34 Ticket #1983 (BUG: loadContainerHierarchy does not filter parameters for Screen) closed by
- fixed
- 12:33 Changeset [6241] by
- #1983 fixed
- 12:33 Ticket #1983 (BUG: loadContainerHierarchy does not filter parameters for Screen) created by
- loadContainerHierarchy does not check parameters if root is Screen, …
- 11:47 Ticket #1982 (Check scale bars are correct) created by
- Make absolutely sure that scale bars are being scaled and drawn correctly …
- 11:19 Ticket #1981 (Fix metadata-validator) created by
- The metadata validator should be fixed and returned to use in order to …
- 11:18 Ticket #1980 (Update to merged Bio-Formats cleanup JARs) created by
- The build system, API usage and testing infrastructure need to be updated …
- 11:10 Ticket #1979 (Feedback 2305:unable to locate pixels) created by
- http://qa.openmicroscopy.org.uk/qa/feedback/2305/ We did not manage to …
- 07:26 Ticket #1978 (BUG: internal repo fails with external registry) created by
- In default.xml, the IceGrid registry is collocated with blitz. When …
03/10/10:
- 21:07 Ticket #1977 (BUG : Stackoverflow errors on recursive maps) created by
- ServiceHandler? and IceMapper? both handle recursive maps badly.
- 17:19 Changeset [6240] by
- fix for ticket #1976
- 17:06 Ticket #1976 (BUG: HistoryTable Original Files not per experimenter) closed by
- 16:44 Changeset [6239] by
- #1732 - preparing the controller to merge 'mydata' and 'team' into the …
- 16:29 Ticket #1976 (BUG: HistoryTable Original Files not per experimenter) created by
- Experimenters seem to be sharing the same original file. Update original …
- 15:20 SearchBridges edited by
- (diff)
- 15:19 SearchBridges edited by
- (diff)
- 15:06 Ticket #1907 (Abstract History DB interface) closed by
- 15:05 Changeset [6238] by
- fixes for history table abstraction #1907
- 14:56 Changeset [6237] by
- Tweaking the omero.gateway test framework
- 14:55 Changeset [6236] by
- OMERO.web: - webadmin/create new group did not allow to choose read-only, …
- 12:53 Ticket #1975 (ISession methods for listing sessions) created by
- ISession should provide: * getOpenSessions() * …
- 12:52 Ticket #1974 (Use Session.useragent for identifying active sessionss) created by
- In order to identity active sessions, all clients should clearly mark …
- 12:45 Ticket #1973 (BUG: Base Date Query not always returning correct results) created by
- Seems to be missing data for 'yesterday, weekly, monthly' results
- 07:42 SearchBridges edited by
- (diff)
03/09/10:
- 15:43 Ticket #1972 (FLIM speed optimisation) created by
- * Wrapping the 'c' MPfit method may improve performance of the script * …
- 15:41 Ticket #1971 (FLIM add optimisations to improve accuracy of curve fit.) created by
- * The current FLIM script uses the sum of all pixels values in the noFret …
- 15:35 Ticket #1970 (FLIM in OMERO) created by
- In collaboration with the BioInformatics group in Dundee we will add FLIM …
- 15:23 WorkPlan/Collaborations edited by
- (diff)
- 15:22 Ticket #1969 (Collaborations) created by
- == Description == On this page, we gather activities related the various …
- 15:21 Changeset [6235] by
- rem #1855:0.5d - timed-out sessions now correctly close services …
- 15:20 Changeset [6234] by
- rem #1855:0.5d - timed-out sessions now correctly close services …
- 12:07 Changeset [6233] by
- fix for missing methods in ImporterConfig? & IniFileLoader?
- 11:47 Ticket #1916 (ROI movie) closed by
- fixed: (In [6232]) Changes to ROI movie figure, closes #1916. Also split …
- 11:47 Changeset [6232] by
- Changes to ROI movie figure, closes #1916. Also split roiFigure.py into 2 …
- 09:50 WorkPlan/NDimensionalData edited by
- (diff)
- 09:38 Ticket #1968 (BUG: ResourceError) created by
- http://qa.openmicroscopy.org.uk/qa/feedback/2306/ …
- 09:37 WorkPlan/NDimensionalData edited by
- (diff)
- 08:37 Ticket #1967 (Unknown companion format throws ValidationException) created by
- http://lists.openmicroscopy.org.uk/pipermail/ome-devel/2010-March/001560.ht …
03/08/10:
- 21:25 Ticket #1966 (Reduce number of object instances) created by
- Looking at a heap dump, there are any number of instances with large …
- 20:48 WorkPlan/NDimensionalData created by
- 20:06 Ticket #1965 (Add central object locking service) created by
- This should allow locking access to various objects (thumbnails, rendering …
- 20:04 Ticket #1964 (Centralize all thread creation in server) created by
- * There should only be a minimal number of executors (cF. `ExecutorService? …
- 20:03 Ticket #1963 (Concurrency improvements) created by
- 19:02 Ticket #1581 (Make client logging configurable) reopened by
- Brian, can you please review why this is closed? I was thinking that the …
- 18:57 Ticket #1962 (BUG: TempFileManager leaves .lock_*.tmp files still) created by
- […]
- 17:33 PythonClientCodeExamples edited by
- (diff)
- 17:25 Changeset [6231] by
- first pass at #1907 rem .25
- 16:58 Ticket #1961 (Increment details.version from RFS and RPS.close()) created by
- This will allow other services to notice that the binary data has been …
- 16:44 Ticket #1960 (Flesh out raw pixels store documentation) created by
- The raw pixels store documentation is a bit lacking, particularly in …
- 15:58 HcsPreview edited by
- (diff)
- 15:46 Changeset [6230] by
- Added methods and static fields
- 14:45 Changeset [6229] by
- showRoiDuration option for getTimeLabels()
- 13:56 Ticket #1959 (Creating connection in the same context (the same active group) by the ...) created by
- Basically, when exception appeared and connection was recreated connection …
- 13:50 Ticket #1958 (Checkout omeroweb_sandbox branch) created by
- There is checkout omeroweb_sandbox branch, play around and see if it looks …
- 13:45 Ticket #1956 (Website: Demo account summary) closed by
- fixed
- 13:35 Ticket #1957 (Correct Job.message and status usage) created by
- Currently, the use of the "message" field and the closed status of jobs is …
- 13:31 Ticket #1956 (Website: Demo account summary) created by
- This following page outline standard working practice on how to create and …
- 13:27 Ticket #1955 (BUG: Pagination does not reload content) created by
- Pagination link does not reload the content. Still links point to the old …
- 12:04 Ticket #1914 (ROI Figure improvements) closed by
- fixed: Fixed. r6228. Still have to ask user about 'Labels every row'?
- 12:01 Changeset [6228] by
- Changes to merged channel labels in ROI script. Still need user decision …
- 11:36 Ticket #1954 (BUG: XSLT AcquiredPixels & Channel ID in 2008-09-to-2009-09) created by
- The XSLT transform 2008-09-to-2009-09 requires AcquiredPixels to do it's …
- 09:43 Changeset [6227] by
- see #1942 - adds OmeroImporter files to lib/server/services.jar
- 08:54 Ticket #1953 (Guarantee UNIQUE script names) created by
- The may only be marginally possible for the internal repository, but …
- 08:19 Ticket #1952 (Add script author info) created by
- See shoola:#1134 and shoola:#1148
03/07/10:
- 19:15 Ticket #1951 (BUG: exception after a single row is added to a recreated table) closed by
- fixed: (In [6226]) fix #1951 - another workaround for fromrows
- 19:15 Changeset [6226] by
- fix #1951 - another workaround for fromrows
03/05/10:
- 15:32 Ticket #1915 (Split View Figure) closed by
- fixed: r6225
- 15:26 Changeset [6225] by
- Fixes Channel order in #1915
- 14:58 Changeset [6224] by
- Docs and typos
- 14:35 Changeset [6223] by
- Slightly more reasonable exception message and test case fix. (See #1801)
- 14:22 Changeset [6222] by
- Unit tests for other usage. Fixed a bug preventing first time settings …
- 14:13 Ticket #1951 (BUG: exception after a single row is added to a recreated table) created by
- Creating a single 'row' of data in a new table will throw an exception …
- 13:50 Ticket #1851 (Upload an EMAN2 bdb single-particle workflow hierarchy to OMERO) closed by
- fixed: (In [6221]) Upload the root level images from EMAN2 folder. Closes #1851
- 13:50 Changeset [6221] by
- Upload the root level images from EMAN2 folder. Closes #1851
- 13:47 Changeset [6220] by
- New method: uploadPlaneByRow for script_utils.py
- 13:34 Changeset [6219] by
- test-compile build now runs to completion. (See #1942)
- 12:20 Ticket #1950 (Big Images) created by
- Maybe we've got this somewhere else, but I can't find it just now, and I …
- 11:51 Changeset [6218] by
- Reverted to r6216 version of CommandLineImporter.java
- 11:47 Ticket #1949 (Poster for Crief Hydro) created by
- Updating the poster for the session at the collage symposium.
- 11:15 Changeset [6217] by
- Addresses #1942; repository code moved, dependencies reconfigured.
- 10:55 Changeset [6216] by
- rem #1946:1d - Initial Table.update(data) method
- 10:25 Ticket #1580 (Unify all command-line logins) closed by
- fixed: r6215 closes. See #1948 and other #838 tasks.
- 10:24 Changeset [6215] by
- closes ticket:1580 - Modifying populate_roi.py. (See ticket:1948)
- 10:20 Ticket #1948 (Allow re-using plugin login in non-plugins) created by
- As a follow-up to #1580, an adapter should be added to populate_roi.py, …
- 10:19 Ticket #1947 (Clean up OmeroCli help messages) created by
- As a byproduct of #1580, the help documentation for the various login …
- 10:00 Ticket #1946 (Add update functionality to omero tables) created by
- add sort of method to allow 'updates' to existing columns/rows within …
- 09:57 Ticket #1945 (Add update functionality to new history tables) created by
- Currently using stub methods which will not update. Once omero.tables …
- 09:56 Changeset [6214] by
- ticket:1935 - cleaning up old sessions
- 09:55 Changeset [6213] by
- ticket:1580 - fixing login logic and refactoring scripts
- 09:55 Changeset [6212] by
- ticket:1944 - moved adduser.py to user.py OmeroCli plugin
- 09:39 Ticket #1944 (Move omero/adduser.py to plugin) created by
- The adduser.py script could be made into a plugin.
- 09:37 Ticket #1943 (Permit not saving sessions to ~/omero/sessions) created by
- Perhaps a user doesn't want a persistent login. Should this be the …
- 09:05 Ticket #1942 (Reconfigure build to allow repositories to access importer libs) created by
- To provide a list of import candidates to clients PublicRepository? needs …
- 08:53 Ticket #1941 (Review perms workplan page) created by
- As a last item for #1434, the various point on WorkPlan/Permissions should …
- 08:46 WorkPlan/Permissions edited by
- (diff)
- 08:45 Ticket #1940 (Allow users to login to public groups) created by
- Currently logging in to a group requires membership, but it is also …
- 08:33 Ticket #1939 (Document use of more advanced encrypton schemes) created by
- 08:33 Ticket #1938 (Enable flag for using SSL for all methods, not just login) created by
- 08:33 Ticket #1937 (Add ADH as default transport) created by
- The primary challenge is testing that the configuration can gracefully …
- 08:30 WorkPlan/SecureLogin edited by
- (diff)
- 08:30 Ticket #1936 (Secure Login and Ldap improvements) created by
- == Login == For logging in to OMERO over hostile networks …
- 08:27 WorkPlan/Permissions edited by
- (diff)
- 08:20 Ticket #1935 (bin/omero login should cleanup sessions) created by
- The ~/omero/sessions directory can quickly become filled.
- 00:44 Changeset [6211] by
- Getting the viewers (mini and full) working again.
- 00:43 Changeset [6210] by
- Adding FileAnnotationWrapper? and some debug points.
- 00:32 Changeset [6209] by
- merging trunk -r6123:6208
03/04/10:
- 16:42 Ticket #1934 (Import of ".map" files as with MRC importer) created by
- Need to add the ".map" extension to be recognised by the MRC importer …
- 16:18 Ticket #1739 (EM software integrated with OMERO) closed by
- duplicate: This content moved here: …
- 16:13 WorkPlan/FileRepositoriesAndOmeroFs edited by
- (diff)
- 16:10 Ticket #1933 (Add support for simple FS-based directory listing to Insight) created by
- Using file repository services and OMERO.fs to avoid data duplication. As …
- 15:34 Ticket #1932 (EMAN2 functionality in OMERO) created by
- Investigate the options for using OMERO as the image repository for single …
- 15:31 Ticket #1931 (BUG: Middle name not populated) created by
- When adding a middle name to a user in the WebAdmin? it doesn't seem to be …
- 15:29 Ticket #1930 (EM import) created by
- Import of big images (4k x 4k and bigger) with high bit depth (32). …
- 15:29 Ticket #1929 (Permissions demo (Sprint 4)) created by
- Various tasks which will fallout from testing. * If the admin renames …
- 15:27 Ticket #1928 (FAQ - Update Questions) created by
- 15:27 Ticket #1927 (Alternative Storage MongoDB) created by
- This page is the plan of work and tasks required to further test MongoDB …
- 15:26 Ticket #1926 (Server-side Import History) created by
- 15:24 Ticket #1925 (Agilo integration) created by
- 15:23 Ticket #1924 (Collaborations) created by
- == Description == On this page, we gather activities related the various …
- 15:19 Ticket #1923 (Save ROI in Insight to MongoDB) created by
- Save ROI in insight in parallel to Postgres and MongoDB, investigate …
- 15:14 Ticket #1922 (Alternative Storage) created by
- Investigate MongoDB as an alternative storage, see AlternativeStorage
- 15:12 Ticket #1921 (Integrate FLIM script) created by
- Integrate FLIM scripts supplied by Pieta, others into OMERO
- 15:09 Ticket #1746 (Adjust exsting history functionality in Importer History to use ...) closed by
- fixed
- 15:09 Ticket #1920 (Medical Imaging) created by
- Tayside Collaboration on brain scan. and also Integrate Adrias's scripts …
- 15:06 Ticket #1742 (Server-side Import History) closed by
- fixed
- 15:05 Ticket #1919 (Server-side Import History) created by
- 14:57 Ticket #1918 (Merging Bio-formats cleanup to OMERO.importer) created by
- 13:37 WorkPlan/ElectronMicroscopy edited by
- (diff)
- 13:37 WorkPlan/ElectronMicroscopy edited by
- (diff)
- 13:30 Ticket #1917 (Electron Microscopy Preview support) created by
- This is the central place to document …
- 13:11 Ticket #1850 (Figure Export improvements-2) closed by
- fixed
- 12:56 Changeset [6208] by
- #1801 Fixes issue with direct thumbnail retrieval. Test cases to come.
- 12:36 Ticket #1916 (ROI movie) created by
- * Need a different dialog for movies of ROIs. * Use different scripts …
- 12:35 Ticket #1915 (Split View Figure) created by
- Order of channel names in Split-View figure merged panel, should be sorted …
- 12:33 Ticket #1914 (ROI Figure improvements) created by
- If width of ROI panels is same as primary image, don't add column labels? …
- 12:33 Ticket #1913 ('Team' and entire group) closed by
- fixed
- 12:33 Changeset [6207] by
- #1913 fixed
- 12:31 Ticket #1913 ('Team' and entire group) created by
- 'Team' needs to show entire group data as default
- 12:25 Ticket #1912 ('my account' update) created by
- If user is a group owner should see panel in 'myaccount' including new …
- 12:25 Ticket #1911 (XML: Linkage - new structure) created by
- Decide on the model structure for the linking mechanism. Try in part to …
- 12:19 Ticket #1910 (XML: Linkage - Examples/Docs) created by
- Write Linkage Examples and documentation
- 12:18 Ticket #1909 (XML: Linkage - Multi-Image support) created by
- Update the model and update the existing transforms see: …
- 12:17 Ticket #1908 (XML: Linkage - ROI support) created by
- Update the model and update the new ROI transforms
- 12:15 WorkPlan/ImporterServerSideHistory edited by
- (diff)
- 12:14 Ticket #1907 (Abstract History DB interface) created by
- The history DB interface to the client needs to be cleaned up and …
- 12:13 Ticket #1906 (XML: Multiple-Paths - transforms) created by
- Write new transforms see also: http://www.ome-xml.org/ticket/70
- 12:12 Ticket #1905 (XML: Multiple-Paths - update) created by
- Update model with changes see also: http://www.ome-xml.org/ticket/70
- 12:11 Ticket #1904 (XML: Multiple-Paths - structure) created by
- see: http://www.ome-xml.org/ticket/70
- 12:10 Ticket #1903 (XML: ROI - tagging) created by
- see: http://www.ome-xml.org/ticket/91
- 12:08 Ticket #1902 (XML: ROI - documentation) created by
- see: http://www.ome-xml.org/ticket/67
- 12:06 Ticket #1901 (XML: ROI - New Transforms) created by
- Write new transforms to update schema. see also …
- 12:05 Ticket #1900 (XML: ROI - New Structure) created by
- see: http://www.ome-xml.org/ticket/108
- 11:54 Ticket #1899 (Figure Export improvements-2) created by
- Second round of meeting with MP and IP for feedback on Figure export …
- 11:46 Ticket #1898 (XML: Plate Acquisition - documentation) created by
- New SPW Documentation page
- 11:44 Ticket #1897 (XML: Plate Acquisition - transforms) created by
- Write new transforms
- 11:44 Ticket #1896 (XML: Plate Acquisition - update) created by
- Update the model
- 11:43 Ticket #1895 (XML: Plate Acquisition - structure) created by
- Decide on new structure. See: http://www.ome-xml.org/ticket/106
- 11:43 Ticket #1894 (Figure Export) created by
- Need to make the Figure scripts robust enough for Preview release. Don't …
- 11:41 Ticket #1893 (XML: Light Source) created by
- see http://www.ome-xml.org/ticket/73
- 11:39 Ticket #1892 (XML: Detector - Changes) created by
- see: http://www.ome-xml.org/ticket/65
- 11:38 Ticket #1891 (XML: Detector - New Entity) created by
- see: http://www.ome-xml.org/ticket/50
- 11:35 Ticket #1890 (XML: Filter) created by
- see: http://www.ome-xml.org/ticket/63 New changes: Adding an abstract …
- 11:34 Changeset [6206] by
- Auto box-size selection for boxer.py script
- 11:33 Ticket #1889 (XML: N-Dimenisional Changes) created by
- Making the changes to the schema once they have been decided.
- 11:32 Ticket #1888 (XML: N-Dimenisional Planing) created by
- see: http://www.ome-xml.org/ticket/112
- 11:30 Ticket #1887 (XML: FLIM) created by
- See: http://www.ome-xml.org/ticket/59
- 11:24 Ticket #1886 (BUG: Automatic action) created by
- Adding a ticket should automatically close a feedback
- 11:23 Ticket #1885 (BUG: 404 Error page redirect) created by
- If not logged in for a secure link, offer login
- 11:22 Ticket #1884 (XML: OriginalFile) created by
- See: http://www.ome-xml.org/ticket/58
- 11:22 Ticket #1883 (Server version) created by
- Add server_version to feedback.
- 11:21 Ticket #1882 (XML: Easy Access Values) created by
- See: http://www.ome-xml.org/ticket/69
- 11:20 Ticket #1881 (Layout) created by
- - Hide classpath by default, and make comment larger and more prominent.
- 11:20 Ticket #1880 (XML: Pre-Release Checklist) created by
- For info: http://www.ome-xml.org/ticket/115
- 11:18 Ticket #1879 (BUG: Skyking ticket does not work) created by
- Adding existing tickets from skyking fails.
- 11:17 Ticket #1878 (Summary field) created by
- Allow longer summary fields
- 11:15 Ticket #1877 (Ticket version) created by
- Once QA knows the current version, tickets should go into that version and …
- 11:14 Ticket #1876 (Filters) created by
- Should be able to filter entries based on whether or not they have tickets …
- 11:13 Ticket #1875 (Download/Upload the file) created by
- Should be able to download file feedback directly from the site or provide …
- 11:13 Ticket #1874 (XML: Review examples before release) created by
- Info at: http://www.ome-xml.org/ticket/60
- 11:12 Ticket #1873 (List of formats, files per format) created by
- For testing, would be most useful if we could do: […] Then for each …
- 11:11 Ticket #1872 (XML: EM Extensions) created by
- Info at: http://www.ome-xml.org/ticket/107
- 11:10 Ticket #1871 (BUG: Access to the feedback) created by
- Once a feedback has a ticket, it might need to be made either PUBLIC or at …
- 11:09 Ticket #1870 (Merging of feedbacks) created by
- allow merging of feedbacks or otherwise marking as "duplicates"
- 11:09 Ticket #1869 (Attach outputs to inputs of related scripts) created by
- 11:04 Ticket #1672 (Implement 'usermode' processor to allow testing scripts locally) closed by
- fixed
- 10:41 Ticket #1868 (XML: General Improvements) created by
- This is a ticket holder for the General Tasks on …
- 10:40 Ticket #1867 (XML: Core Model Evolution) created by
- This is a ticket holder for the Core Model Evolution story on …
- 10:34 Ticket #1866 (OMERO.qa improvement) created by
- According to new way of managing development processes OMERO.qa needs to …
- 10:20 Ticket #1865 (XML: Instrument Model Evolution) created by
- This is a ticket holder for the Instrument Model Evolution story on …
- 10:17 Ticket #1864 (XML: PlateAcquisition) created by
- This is a ticket holder for the Plate Acquisition story on …
- 10:15 Ticket #1863 (XML: Linkage) created by
- This is a ticket holder for the Linkage story on …
- 10:13 Ticket #1862 (XML: Multiple-Paths) created by
- This is a ticket holder for the Multiple-Paths story on …
- 10:12 Ticket #1861 (XML: ROI) created by
- This is a ticket holder for the ROI story on …
- 09:20 Ticket #1860 (Scripts Cleanup) created by
- Various tasks which are needed for cleaning up processor.py and friends
- 09:19 Ticket #1859 (Scripts.ice documentation) created by
- All methods and types should be more fully explained in the slice file.
- 08:34 Ticket #1858 (Encourage script writer style) created by
- For lists and map parameters, the UI has no way of knowing the type of …
- 08:33 Ticket #1857 (Notification to clients on process completion) created by
- 08:25 Ticket #983 (Implement processor registration) closed by
- duplicate
- 08:04 WorkPlan/ScriptingImprovements edited by
- (diff)
- 08:03 Ticket #1856 (ScriptingImprovements) created by
- The planned improvements are geared toward making the writing and testing …
- 07:30 Changeset [6205] by
- ticket:1580 - Adding missing file util/sessions.py
- 07:19 Changeset [6204] by
- ticket:1580 - Fixing lossed parameters to login
- 07:19 Changeset [6203] by
- OmeroPy : Adding logs_library for working with var/log files
03/03/10:
- 19:21 Ticket #1801 (Thumbnail / Rendering will need to be permissions-aware) closed by
- fixed: Should be complete with nicer exception messages in r6202.
- 19:00 Changeset [6202] by
- #1801 Nicer exceptions and test cases to cover them.
- 18:42 Ticket #1855 (Possible file descriptor leak) created by
- Needs significant testing to find where the leak could be. == Results: == …
- 18:00 Changeset [6201] by
- #1801 Fixing a couple bugs related to setPixelsId() and owner query usage. …
- 16:33 Ticket #1785 (FAQ and mailing list) closed by
- 15:58 Ticket #1852 (OmeroCpp build broken due to -Werror) closed by
- fixed: r6180
- 15:46 Changeset [6200] by
- SharedResources? : Removing deprecation
- 15:46 Changeset [6199] by
- ticket:1672 - usermode processor improvements and refactorings (replace)
- 15:46 Changeset [6198] by
- ticket:1672 - Refactoring for AcceptCallback filtering
- 15:46 Changeset [6197] by
- OmeroPy : Fixing warning on shutdown in servants
- 15:46 Changeset [6196] by
- ticket:1672 - Various SharedResources? improvements and refactorings
- 15:46 Changeset [6195] by
- ticket:1672 - Refactoring Details for invocation-based group context
- 15:46 Changeset [6194] by
- ticket:1672 - usermode processor improvements and refactorings
- 15:46 Changeset [6193] by
- ticket:1580 - Conversion to argparse for OmeroCli login handling
- 15:46 Changeset [6192] by
- ticket:1672 - usermode improvements, including launch and other OmeroCli …
- 15:46 Changeset [6191] by
- Minor fixes
- 15:46 Changeset [6190] by
- ticket:860 : Disabling unused JobNotification
- 15:46 Changeset [6189] by
- ticket:1672 - Adding ProcessorAcceptsCallback and servant setProxy
- 15:46 Changeset [6188] by
- Test correction in makePixels
- 15:46 Changeset [6187] by
- OmeroPy : Minor additions
- 15:46 Changeset [6186] by
- ticket:1672 - Improved script plugin plus tests
- 15:46 Changeset [6185] by
- ticket:1580 - Improved OmeroCli sessions plugin plus tests
- 15:46 Changeset [6184] by
- ticket:1580 - Rework of OmeroCli Arguments infrastructure incl. logins
- 15:46 Changeset [6183] by
- OmeroPy : Refactoring out omero.util.get_user_dir()
- 15:46 Changeset [6182] by
- ticket:1822 - Passing test
- 15:46 Changeset [6181] by
- ticket:1672 - Adding processor registration for usermode
- 15:46 Changeset [6180] by
- ticket:1852 - Removing -Werror from compile flags See: …
- 15:46 Changeset [6179] by
- OmeroPy : Reworking of omero.client.download
- 15:46 Changeset [6178] by
- OmeroCli : Initial work on __edit method
- 15:46 Changeset [6177] by
- OmeroPy : Returning false on client check if communicator is missing
- 15:46 Changeset [6176] by
- OmeroCli : Whitespace handling on Windows
- 15:46 Changeset [6175] by
- Various tests
- 15:46 Changeset [6174] by
- OmeroTables : quieting tests
- 15:46 Changeset [6173] by
- ImportLibrary : Minor change plus test
- 15:46 Changeset [6172] by
- OmeroTables : Adding example to slice file
- 15:46 Changeset [6171] by
- OmeroPy : Adding logger instance
- 15:46 Changeset [6170] by
- Fixing timeline test
- 15:46 Changeset [6169] by
- OmeroSearch : Adding more docs to omero.properties
- 15:23 OmeroPy edited by
- (diff)
- 15:21 OmeroPy edited by
- (diff)
- 15:13 OmeroPy edited by
- (diff)
- 14:14 Ticket #1854 (Permissions) created by
- Default permissions were lowered to rw---- in previous versions because of …
- 14:04 Ticket #1852 (OmeroCpp build broken due to -Werror) created by
- http://lists.openmicroscopy.org.uk/pipermail/ome-devel/2010-February/001557 …
- 14:01 Ticket #1851 (Upload an EMAN2 bdb single-particle workflow hierarchy to OMERO) created by
- E.g. root * images.mrc * particles (folder) * e2boxercache (folder) …
- 13:02 WorkPlan/ElectronMicroscopy edited by
- (diff)
- 13:00 Ticket #1846 (Upload an EMAN2 bdb layer to OMERO) closed by
- fixed
- 12:27 Changeset [6168] by
- Various small changes to a few scripts.
- 12:25 Changeset [6167] by
- typo
- 12:24 Changeset [6166] by
- Allow namespace for FilAnnotations? in script_utils.py
- 12:17 Changeset [6165] by
- #1801 Ported version of thumbnail bean and working thumbnail context.
- 12:16 Changeset [6164] by
- Some more error checking in the managed context test.
- 11:09 Changeset [6163] by
- Metadata from EMAN2 bdb added as Original Metadata to imported images
03/02/10:
- 20:55 Changeset [6162] by
- Script for uploading EMAN2 bdb images to OMERO
- 19:58 Ticket #1850 (Figure Export improvements-2) created by
- This task is now a User Story …
- 16:25 Ticket #1849 (omeroweb's getUsage() likely leads to OOM) created by
- in omeroweb/extlib/gateway.py loading all pixels likely leads OOM …
- 15:08 Ticket #1848 (Removing user from "users" group) created by
- Attempt to de-activate a user by delete the experimenter-group link. as …
- 13:17 Ticket #1847 (Share and publish) created by
- 13:15 Ticket #1826 (Searching and filters) closed by
- 13:15 Changeset [6161] by
- OMERO.web - #1825, - #1826.
- 11:57 WorkPlan/ImportInsight edited by
- (diff)
- 11:47 WorkPlan/FigureExport edited by
- (diff)
- 10:52 WorkPlan/FileRepositoriesAndOmeroFs edited by
- (diff)
- 10:20 WorkPlan/ElectronMicroscopy edited by
- (diff)
- 10:17 Ticket #1846 (Upload an EMAN2 bdb layer to OMERO) created by
- This would have to be a local running script (not scripting service) that …
- 10:08 Ticket #1845 (Scripting and permissions) created by
- Loading a script and try to access the parameters using the …
- 09:59 OmeroPy/ScriptingServiceGuide edited by
- (diff)
03/01/10:
- 20:40 Changeset [6160] by
- #1801 Initial version of thumbnail context (unused at the moment)
- 17:27 WorkPlan/ElectronMicroscopy edited by
- (diff)
- 17:16 Ticket #1844 (CTF correction by EMAN2) created by
- Use EMAN2 to do CTF correction on a bunch of images in OMERO. This is the …
- 17:08 WorkPlan/ElectronMicroscopy edited by
- (diff)
- 15:51 Ticket #1837 (Export of images in EM formats) closed by
- fixed: r6158, r6159 Currently script takes imageIds parameter and attaches the …
- 15:46 Changeset [6159] by
- Better handling of known / unknown formats, printing etc.
- 15:23 WorkPlan/FileRepositoriesAndOmeroFs edited by
- (diff)
- 15:22 WorkPlan/FileRepositoriesAndOmeroFs edited by
- (diff)
- 15:17 Ticket #1842 (Lucene seems to not index screens) created by
- After Luke check up there is no 'omero.model.screen.Screen' in …
- 15:00 Changeset [6158] by
- Script for saving files in EM formats using EMAN2
- 14:49 Ticket #1841 (Geometry background process never ends) created by
- Is processing shapes every second and never stops. […]
- 14:29 Ticket #1840 (Processor : remove JobNotification) created by
- The JobNotification class can be removed in favor of using the …
- 14:23 Ticket #1839 (Processor : on session close, remove session.) created by
- 14:06 Ticket #1838 (Ubuntu 9.10 mod_python and OMERO.web slow?) created by
- It was reported on the forums …
- 13:28 Changeset [6157] by
- uploadAndAttachFile() won't fail if format not known. Use text/plain
- 13:22 WorkPlan/FileRepositoriesAndOmeroFs edited by
- (diff)
- 12:42 Changeset [6156] by
- Fixed thumbnail store white space.
- 12:00 Changeset [6155] by
- Fixed test case that may not compile due to dereferencing issues.
- 10:05 WorkPlan/ElectronMicroscopy edited by
- (diff)
- 10:04 Ticket #1837 (Export of images in EM formats) created by
- Export images with a single T and C as EM images. Use EMAN2 save …
- 09:59 WorkPlan/ElectronMicroscopy edited by
- (diff)
- 09:57 Ticket #1836 (Block based import) created by
- The planar write methods in the importer should be updated to write in a …
- 09:55 Changeset [6154] by
- missed javascript
- 09:22 WorkPlan/Permissions edited by
- (diff)
- 09:21 WorkPlan/Permissions edited by
- (diff)
- 08:22 Ticket #1830 (Failure in .newTable() method after deleting an older original file.) closed by
- fixed: Fixed by r6153
- 08:21 Changeset [6153] by
- ticket:1830 - Regression on non-existing file, added in r6114 (#1800) * …
02/28/10:
- 10:36 WorkPlan/Permissions edited by
- (diff)
- 10:29 Ticket #1829 (Annotations Loading and Permissions) closed by
- fixed: r6152
- 10:28 Changeset [6152] by
- closed #1829 and fixed documentation
- 10:24 WorkPlan/Permissions edited by
- (diff)
02/26/10:
- 18:03 Ticket #1272 (OmeroCpp build on Windows fails) closed by
- duplicate: #1596 duplicates this task.
- 18:00 Ticket #1835 (OmeroCpp Improvements) created by
- Collection of various OmeroCpp tasks required for 4.2
- 17:07 Ticket #1699 (Add "Forums" to help menu of importer like in insight) closed by
- fixed
- 17:06 Ticket #1691 (Default button on close should be "Quit" not "Don't quit") closed by
- fixed
- 16:35 Changeset [6151] by
- missed for r6150
- 16:34 Ticket #1834 (Buttons, links and others) closed by
- fixed: r6150
- 16:33 Changeset [6150] by
- OMERO.web: - #1834, fixed
- 16:32 Ticket #1834 (Buttons, links and others) created by
- 15:57 PythonClientCodeExamples edited by
- (diff)
- 15:55 Ticket #1833 (Feedback 2297:deleteExperimenter) created by
- http://qa.openmicroscopy.org.uk/qa/feedback/2297/ Exception Location: …
- 15:53 PythonClientBeginners edited by
- (diff)
- 15:46 OmeroClients edited by
- (diff)
- 15:38 Ticket #1832 (Bug: OME-XML out of memory exception) created by
- http://qa.openmicroscopy.org.uk/qa/feedback/2289/
- 15:36 OmeroPy edited by
- (diff)
- 15:36 Ticket #1831 (BUG:Feedback 1069) created by
- AttributeError? at /webclient/action/addnew/ 'NoneType?' object has no …
- 14:55 Ticket #1830 (Failure in .newTable() method after deleting an older original file.) created by
- Deleting an originalFile and then reinitializing it using …
- 14:54 OmeroApi edited by
- (diff)
- 14:40 OmeroApi edited by
- (diff)
- 14:35 OmeroApi edited by
- (diff)
- 14:31 OmeroApi edited by
- (diff)
- 13:43 OmeroApi edited by
- (diff)
- 13:11 ExtendingOmero edited by
- (diff)
- 12:41 WorkPlan/Permissions edited by
- (diff)
- 12:37 Ticket #1829 (Annotations Loading and Permissions) created by
- Review the implementation of the loadAnnotation method in …
- 12:36 WorkPlan/LdapImprovements edited by
- (diff)
- 12:34 Ticket #1828 (LDAP authentication restriction via groups does not work) created by
- When using a groupOfUniqueNames as omero.ldap.groups the …
- 12:22 PythonClientBeginners edited by
- (diff)
- 12:22 PythonClientBeginners edited by
- (diff)
- 12:09 OmeroPy/ScriptingServiceGuide edited by
- (diff)
- 12:05 OmeroPy/ScriptingServiceGuide edited by
- (diff)
- 11:52 OmeroPy/ScriptingServiceGuide edited by
- (diff)
- 11:40 OmeroPy/ScriptingServiceGuide edited by
- (diff)
- 11:22 OmeroPy/ScriptingServiceGuide edited by
- (diff)
- 10:34 Changeset [6149] by
- OMERO.web: - #1826, missed files from r6146 - #1827, minor fixes
- 10:20 WorkPlan/Permissions edited by
- (diff)
- 10:19 OmeroPy/ScriptingServiceGuide created by
- 10:17 Changeset [6148] by
- Adding upload script to Examples
- 10:16 WorkPlan/FileRepositoriesAndOmeroFs edited by
- (diff)
- 10:16 WorkPlan/FileRepositoriesAndOmeroFs edited by
- (diff)
- 09:42 PythonClientCodeExamples edited by
- (diff)
- 08:59 Ticket #1827 (Annotation support) closed by
- 08:59 Ticket #1825 (History/calendar update) closed by
- 08:37 Ticket #1827 (Annotation support) created by
- Comments, editability, history etc. Users like some features of the …
- 08:37 Ticket #1826 (Searching and filters) created by
- 08:36 Ticket #1825 (History/calendar update) created by
- 00:07 Changeset [6147] by
- UI tweaks to the full viewer.
02/25/10:
- 21:34 WorkPlan/FileRepositoriesAndOmeroFs edited by
- (diff)
- 21:21 WorkPlan/FileRepositoriesAndOmeroFs edited by
- (diff)
- 21:16 WorkPlan/FileRepositoriesAndOmeroFs edited by
- (diff)
- 18:22 WorkPlan/FileRepositoriesAndOmeroFs edited by
- (diff)
- 17:48 WorkPlan/FileRepositoriesAndOmeroFs edited by
- (diff)
- 17:41 Changeset [6146] by
- OMERO.web - fist stage of searching changes
- 16:47 PythonClientCodeExamples edited by
- (diff)
- 16:47 WorkPlan/Collaborations edited by
- (diff)
- 16:25 PythonClientCodeExamples edited by
- (diff)
- 16:25 WorkPlan/OmeroWebUI edited by
- (diff)
- 16:25 WorkPlan/OmeroWebUI edited by
- (diff)
- 16:16 PythonClientCodeExamples edited by
- (diff)
- 13:57 PythonClientCodeExamples edited by
- (diff)
- 13:47 PythonClientCodeExamples edited by
- (diff)
- 13:37 Changeset [6145] by
- added support for images
- 12:46 PythonClientCodeExamples edited by
- (diff)
- 12:37 PythonClientCodeExamples edited by
- (diff)
- 12:00 Changeset [6144] by
- Added more doc, fixed bugs.
- 11:58 WorkPlan/FileRepositoriesAndOmeroFs edited by
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- 11:44 WorkPlan/AlternativeStorageMongoDB edited by
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- 11:42 WorkPlan/AlternativeStorageMongoDB edited by
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- 11:28 WorkPlan/AlternativeStorageMongoDB edited by
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- 11:28 WorkPlan/FigureExport edited by
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- 11:25 Changeset [6143] by
- Editing scripting examples
- 11:16 PythonClientCodeExamples created by
- 11:15 Changeset [6142] by
- Examples for using the scripting service
- 11:10 WorkPlan/RoiStorage edited by
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- 11:10 WorkPlan/ImporterBugFixes edited by
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- 11:08 WorkPlan/ImporterMinorAdditions edited by
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- 11:07 WorkPlan/ImporterServerSideHistory edited by
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- 10:28 PythonClientBeginners edited by
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- 10:11 PythonClientBeginners edited by
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- 09:00 WorkPlan/ScriptingImprovements edited by
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- 08:58 WorkPlan/FigureExport edited by
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- 08:57 WorkPlan/FigureExport edited by
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- 08:55 WorkPlan/FileRepositoriesAndOmeroFs edited by
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- 08:54 WorkPlan/FileRepositoriesAndOmeroFs edited by
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- 08:53 WorkPlan/FileRepositoriesAndOmeroFs edited by
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- 08:47 WorkPlan/Permissions edited by
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- 08:41 WorkPlan/Permissions edited by
- (diff)
- 01:04 Changeset [6141] by
- nginx config template was missing client_body_temp_path for POST data temp …
- 00:30 Changeset [6140] by
- Allow setting ICE_CONFIG through environment var
02/24/10:
- 17:38 Changeset [6139] by
- OMERO.web: - history, fixed
- 17:24 Changeset [6138] by
- Changes to methods added in r6077 to return files AND directories.
- 15:39 WorkPlan/FileRepositoriesAndOmeroFs edited by
- (diff)
- 14:03 WorkPlan/Permissions edited by
- (diff)
- 13:31 Changeset [6137] by
- OMERO.web: - unused files
- 13:29 Changeset [6136] by
- experimenter/photo namespace created
- 12:21 Ticket #1822 (permissions and ownership) closed by
- fixed: Logged in as root, found a user and tried to edit first name: In the log: …
- 11:21 WorkPlan/FileRepositoriesAndOmeroFs edited by
- (diff)
- 11:20 Changeset [6135] by
- Interface for handling image objects with some dummy implementation for …
- 10:38 Changeset [6134] by
- more update for r6131
02/23/10:
- 19:35 Changeset [6133] by
- Creating a wrapper for jquery's ajax call, which calls the same callback …
- 17:09 Changeset [6132] by
- Added more documentation on methods, fixed bugs.
- 16:52 Changeset [6131] by
- OMERO.web - icon and table view fixes - annotation forms fixes - ui …
- 12:46 Changeset [6130] by
- Roi script fig legend print indexes fix.
- 11:33 Ticket #1822 (permissions and ownership) created by
- Context: * user 1 (login name is user1) is owner of private …
- 11:20 WorkPlan/HCSData edited by
- (diff)
- 11:19 WorkPlan/FileRepositoriesAndOmeroFs edited by
- (diff)
- 11:18 WorkPlan/Permissions edited by
- (diff)
- 11:15 Ticket #1821 (Create OME-TIFF examples) created by
- 11:15 Ticket #1820 (Create OME-XML examples) created by
- ==== Initial List ==== * Minimal * SA example with sensible data in it …
- 11:14 Ticket #1819 (Define list of ome-xml and ome-tiff examples needed) created by
- ==== XML Examples ==== * Minimal * SA example with sensible data in it …
- 11:09 WorkPlan/Permissions edited by
- (diff)
- 11:09 Ticket #1818 (Create example OME-XML and OME-TIFF files) created by
- A collection of valid and invalid example files to use for both unit tests …
- 09:22 Ticket #1817 (Permissions : Keep track of previous security context) created by
- ServiceFactory or SessionManageImpl instances could keep track of the …
- 07:58 Changeset [6129] by
- ticket:1731 - Attempted fix for startup issue reported by J-M
02/22/10:
- 19:03 Ticket #1816 (Support BlitzGateway(client)) created by
- It would be nice if one could add a wrapper to an existing omero.client …
- 18:47 WorkPlan/Permissions edited by
- (diff)
- 16:25 Ticket #1790 (Issues with cleanse.py on Windows) closed by
- invalid: Tested on Windows, seems to be working fine. Re-open as necessary.
- 16:03 Changeset [6128] by
- Handy script for uploading scripts to the server
- 16:00 Changeset [6127] by
- merged trunk -r6114:6123
- 14:18 WorkPlan/Permissions edited by
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- 14:11 WorkPlan/Permissions edited by
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- 10:53 Ticket #1815 (Permissions : Consider an "IAdmin2" interface more inline with group ...) created by
- After the work on #1434, it may make sense to have a second admin …
- 10:48 WorkPlan/ScriptingImprovements edited by
- (diff)
- 10:34 Ticket #1814 (Docs : correct timeout examples) created by
- https://openmicroscopy.org/community/viewtopic.php?f=6&t=320&p=882#p882
- 10:30 Ticket #1813 (Tables : Add dropTable and other high-level methods) created by
- * dropTable * copyTable * …
- 10:16 Changeset [6126] by
- getDate should be available for each of the objects, not only ImageWrapper?
- 10:01 WorkPlan/Permissions edited by
- (diff)
- 08:30 Changeset [6125] by
- ticket:1811 - initial passing test
- 08:30 Changeset [6124] by
- ticket:1731 - Added PermissionMismatchGSV exception
- 08:30 Changeset [6123] by
- ticket:1801 - Reverting change to setRenderingDefId
02/21/10:
- 19:15 Ticket #46 (Provided search functionality should be keyed to user's ability/context.) closed by
- fixed: Jean-Marie, this is ticket from early in the search days. I'm closing it, …
- 19:14 Ticket #24 (Search for arbitrary objects) closed by
- fixed: Already implemented.
02/19/10:
- 15:01 WorkPlan/OmeroWebUI edited by
- (diff)
- 15:01 WorkPlan/HCSData edited by
- (diff)
- 14:37 Ticket #1812 (BUG: About box duplicating text entry when reselected) created by
- The about box in the importer adds a duplicates the version text every …
- 13:48 WorkPlan/AlternativeStorageMongoDB edited by
- (diff)
- 13:46 Changeset [6122] by
- Edited parameter list in-line with SplitViewFigure? script
- 13:46 WorkPlan/AlternativeStorageMongoDB edited by
- (diff)
- 13:31 WorkPlan/AlternativeStorageMongoDB edited by
- (diff)
- 13:22 WorkPlan/AlternativeStorageMongoDB edited by
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- 12:54 WorkPlan/FigureExport edited by
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- 11:14 WorkPlan/Permissions edited by
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- 11:13 WorkPlan/Permissions edited by
- (diff)
- 11:00 WorkPlan/Permissions edited by
- (diff)
- 10:39 WorkPlan/OmeroWebUI edited by
- (diff)
- 10:35 WorkPlan/OmeroWebUI edited by
- (diff)
- 10:27 WorkPlan/Permissions edited by
- (diff)
- 10:25 WorkPlan/Permissions edited by
- (diff)
- 09:37 WorkPlan/FileRepositoriesAndOmeroFs edited by
- (diff)
- 04:37 Changeset [6121] by
- weblitz-viewport now gets the rdef default Z and T instead of assuming …
- 04:36 Changeset [6120] by
- fixing typo
- 04:36 Changeset [6119] by
- making js function setImageDefaults always available and removing the …
- 04:35 Changeset [6118] by
- catching UnknownException? in function wrapper
02/18/10:
- 16:41 WorkPlan/FigureExport edited by
- (diff)
- 16:24 WorkPlan/Permissions edited by
- (diff)
- 16:23 WorkPlan/Permissions edited by
- (diff)
- 16:17 WorkPlan/Permissions edited by
- (diff)
- 16:01 WorkPlan/ScriptingImprovements edited by
- (diff)
- 15:56 Changeset [6117] by
- merge trunk -r6108:6114
- 15:55 WorkPlan/ScriptingImprovements edited by
- (diff)
- 15:53 Changeset [6116] by
- Preventing changes to permissions when creating annotations, as access …
- 15:52 Changeset [6115] by
- Adding enableapp to omero web plugin
- 15:51 Ticket #1811 (Permissions: Moving user between groups) created by
- Scenario: * Create an experimenter: user1 as owner of group1 …
- 15:44 WorkPlan/Permissions edited by
- (diff)
- 15:19 WorkPlan/Permissions edited by
- (diff)
- 15:18 WorkPlan/Permissions edited by
- (diff)
- 15:17 WorkPlan/Permissions edited by
- (diff)
- 15:16 WorkPlan/Permissions edited by
- (diff)
- 13:34 Ticket #1076 (IAdmin methods require logging into system group) closed by
- fixed: Handled as a part of #1434 (specifically #445)
- 13:23 Ticket #1793 (Owner doesn't see members data in a private group) closed by
- fixed: Assuming that this is a related to #1769 and is now fixed.
- 13:19 Ticket #1800 (OMERO.tables failing on string column saves.) closed by
- fixed: r6114 has a fix. Padding your strings should no longer be necessary, …
- 13:18 Changeset [6114] by
- ticket:1800 - Fixing StringColumnI.arrays()
- 13:12 WorkPlan/AlternativeStorageMongoDB edited by
- (diff)
- 11:57 Changeset [6113] by
- Working OK with 4k x 4k images
- 11:28 WorkPlan/AlternativeStorageMongoDB edited by
- (diff)
- 11:28 Ticket #1810 (MongoDB: Alternative Structures) created by
- MongoDB is a different architecture to contempory RDBM tables, as such it …
- 11:24 Ticket #1739 (EM software integrated with OMERO) reopened by
- 11:18 Ticket #1809 (MongoDB: Modify PopulateROI to upload plate data to MongoDB) created by
- Create a test framework, modifying Populateroi to upload plate data to …
- 11:12 WorkPlan/Collaborations edited by
- (diff)
- 11:08 Ticket #1808 (Medical Image: Script integration) created by
- Integrate script provided by Adria.
- 11:06 Ticket #1807 (FLIM script integration) created by
- Integrate script provided by Pieta for FLIM data
- 10:48 WorkPlan/AlternativeStorageMongoDB edited by
- (diff)
- 10:38 WorkPlan/RoiStorage edited by
- (diff)
- 10:31 WorkPlan/RoiStorage edited by
- (diff)
- 10:30 WorkPlan/RoiStorage edited by
- (diff)
- 09:44 Ticket #1802 (Permissions : Indexer broken since doesn't log into proper group) closed by
- fixed: r6112 essentially disables the security system for the "ome.fulltext" …
- 09:43 Changeset [6112] by
- ticket:1802 - Refactoring secSystem to disable READ checks
- 08:56 Changeset [6111] by
- OMERO.web - minor bugs fixed
- 01:40 Changeset [6110] by
- omero.gateway dbhelper allows for defining the default group permissions …
- 01:29 Changeset [6109] by
- merged trunk -r6044:6108
02/17/10:
- 19:09 Ticket #1806 (Search : implement fetchAlso logic) created by
- Values can be passed in, but they aren't used anywhere. Alternative: …
- 18:47 Ticket #1805 (Importer : Handle Protocol exceptions with "possible version mismatch ...) created by
- See #1803 for details
- 18:46 Ticket #1804 (Web : Handle Protocol exceptions with "possible version mismatch error") created by
- See #1803 for details.
- 18:45 Ticket #1803 (Insight : Handle Protocol exceptions with "possible version mismatch ...) created by
- Ice exceptions aren't something that our client library can really handle, …
- 16:19 WorkPlan/Permissions edited by
- (diff)
- 15:49 WorkPlan/Permissions edited by
- (diff)
- 13:59 Ticket #1802 (Permissions : Indexer broken since doesn't log into proper group) created by
- […]
- 13:27 Changeset [6108] by
- ticket:1801 - Fixing getThumbnailByLongestSideSet
- 13:10 WorkPlan/Permissions edited by
- (diff)
- 13:07 Ticket #1801 (Thumbnail / Rendering will need to be permissions-aware) created by
- shoola:ticket:1157 and ticket:1769 describe issues when admins or PIs try …
- 11:48 WorkPlan/FileRepositoriesAndOmeroFs edited by
- (diff)
- 11:30 WorkPlan/RoiStorage edited by
- (diff)
- 11:29 WorkPlan/UpgradeLibraries edited by
- (diff)
- 11:27 WorkPlan/Permissions edited by
- (diff)
- 11:25 Ticket #1776 (Permissions : Prevent inappropriate permission changes in IObjects) closed by
- fixed: r6107 removes a last "NYI" related to the previous comment. We may want to …
- 11:24 Changeset [6107] by
- ticket:1776 - Removing NYI in IAdmin.handleGroupPermissions
- 11:23 WorkPlan/Permissions edited by
- (diff)
- 11:15 Ticket #1778 (Permissions : Add addGroupOwners and removeGroupOwners) closed by
- fixed: Methods in place and working.
- 11:15 Ticket #1781 (Permissions : Allow group owners to manage own group) closed by
- fixed: We may need to add group-owner access to other special methods, but for …
- 11:08 Ticket #1769 (Permissions : Handle admin/PI viewing/annotating in private group) closed by
- fixed: Closing this ticket since the functionality that we are shooting for is in …
- 10:52 Changeset [6106] by
- ticket:1769 - Automatic re-use of rendering defs for admin …
- 10:52 Changeset [6105] by
- ticket:1769 - Added ReadOnlyAdminGroupSecurityViolation
- 10:52 Changeset [6104] by
- Removing log message
- 10:51 Changeset [6103] by
- Adding .hg to .gitignore
02/16/10:
- 21:57 WorkPlan/Permissions edited by
- (diff)
- 17:26 Ticket #1800 (OMERO.tables failing on string column saves.) created by
- OMERO.tables is generating a server side error message while trying to …
- 17:13 Changeset [6102] by
- Added 'HOME' environment variable to scripting service.
- 16:52 WorkPlan/AlternativeStorageMongoDB edited by
- (diff)
- 16:37 WorkPlan/AlternativeStorageMongoDB created by
- 16:31 WorkPlan/RoiStorage edited by
- (diff)
- 16:31 WorkPlan/RoiStorage edited by
- (diff)
- 13:55 Changeset [6101] by
- missed variable in r6100
- 13:54 Changeset [6100] by
- OMERO.web: #1456 - missed links #1684 - data loader
- 13:43 WorkPlan/HCSData edited by
- (diff)
- 13:43 WorkPlan/HCSData edited by
- (diff)
- 13:42 WorkPlan/OmeroWebUI edited by
- (diff)
- 13:35 WorkPlan/Permissions edited by
- (diff)
- 13:34 WorkPlan/Permissions edited by
- (diff)
- 13:27 Changeset [6099] by
- Script makes new images from ROI regions of a parent image.
- 13:26 Changeset [6098] by
- Script deletes old ROIs, adds colour etc.
- 12:15 Changeset [6097] by
- OMERO.web: - #1456 annotation forms, fixed
- 11:26 Ticket #1754 (Make thumbnails available for a directory's files.) closed by
- fixed: This limited implementation uses BF to get and cache fixed-size thumbnails …
- 11:02 WorkPlan/FileRepositoriesAndOmeroFs edited by
- (diff)
- 11:01 WorkPlan/FileRepositoriesAndOmeroFs edited by
- (diff)
- 10:58 Ticket #1799 (Pass back relevant files as Image objects) created by
- A registered image when returned should probably included the pixels …
- 09:59 WorkPlan/Permissions edited by
- (diff)
- 09:49 WorkPlan/Permissions edited by
- (diff)
- 09:21 WorkPlan/Permissions edited by
- (diff)
02/15/10:
- 17:01 Changeset [6096] by
- omeroweb.extlib: temporarily commenting out listAnnotations, which is …
- 17:00 Changeset [6095] by
- python gateway: adding wrapper for setDescription
- 16:58 Changeset [6094] by
- ticket:1791 - Adding support for WORLD-use of "user" group Note: also …
- 16:58 Changeset [6093] by
- ticket:1434 - minor test fix
- 16:58 Changeset [6092] by
- ticket:1781 - Adding minor test
- 16:58 Changeset [6091] by
- ticket:1434 - s/default/CHANGE_ME/ in adduser.py
- 16:17 Ticket #1798 (BUG: SecurityFilter doesn't seem to be applied to ...) created by
- `IMetadata.loadAnnotations(Experimenter.class, userId, FileAnnotation?, …
- 10:23 Changeset [6090] by
- OMERO.web #1456: - missed content for r6087
- 10:05 Changeset [6089] by
- adding new 'ui component' 1.7
- 10:04 Changeset [6088] by
- deleting 'ui component'
- 09:59 Changeset [6087] by
- more update for r6085
- 09:57 Changeset [6086] by
- Initial commit of scripts for adding EMAN2 functionality to OMERO
- 09:56 WorkPlan/FigureExport edited by
- (diff)
- 09:55 Changeset [6085] by
- OMERO.web #1456: - WebAdmin? allows to manipulate permissions, ready to …
- 09:24 Changeset [6084] by
- Added "MergedNames?" script parameter
- 03:51 Changeset [6083] by
- python gateway support for rendering thumbnails for specific sections.
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