Timeline


and .

03/11/10:

19:46 Ticket #1819 (Define list of ome-xml and ome-tiff examples needed) closed by ajpatterson
16:26 Ticket #1973 (BUG: Base Date Query not always returning correct results) closed by bwzloranger
15:45 Ticket #1989 (BUG: Updating group not change the permissions) closed by atarkowska
fixed
15:43 Changeset [6244] by atarkowska
fixes #1989
15:41 Ticket #1989 (BUG: Updating group not change the permissions) created by atarkowska
When administrator/owner was trying to update group, permissions was not …
15:38 Changeset [6243] by cblackburn
Returns import candidates, addresses untasked part of #1799; Fuller …
15:28 Ticket #1988 (Deal with errors and events from ImportCandidates) created by cblackburn
Any errors need to be passed back to the client. ImportableFiles? should …
15:27 Ticket #1744 (Implement OMERO.tables history table for importer) closed by bwzloranger
fixed
15:21 Ticket #1987 (Add details to returned Image objects) created by cblackburn
A registered image when returned should probably included the pixels …
14:01 WorkPlan/ImporterServerSideHistory edited by bwzloranger
(diff)
13:58 Changeset [6242] by cblackburn
Additional changes to build. See #1942
13:02 Ticket #1986 (Make omero2em.py server-side) created by wmoore
Move the dependency on EMAN2 to the server and have the scripting service …
12:51 Ticket #1985 (FLIM: ROI tagging, storage) created by dzmacdonald
The Flim workflow requires that the ROI be stored on the server and have …
12:36 Ticket #1984 (FLIM: Visualisation) created by dzmacdonald
1. Generate the Heatmaps and upload/attach in OMERO 1. Generate the …
12:34 Ticket #1983 (BUG: loadContainerHierarchy does not filter parameters for Screen) closed by atarkowska
fixed
12:33 Changeset [6241] by atarkowska
#1983 fixed
12:33 Ticket #1983 (BUG: loadContainerHierarchy does not filter parameters for Screen) created by atarkowska
loadContainerHierarchy does not check parameters if root is Screen, …
11:47 Ticket #1982 (Check scale bars are correct) created by wmoore
Make absolutely sure that scale bars are being scaled and drawn correctly …
11:19 Ticket #1981 (Fix metadata-validator) created by cxallan
The metadata validator should be fixed and returned to use in order to …
11:18 Ticket #1980 (Update to merged Bio-Formats cleanup JARs) created by cxallan
The build system, API usage and testing infrastructure need to be updated …
11:10 Ticket #1979 (Feedback 2305:unable to locate pixels) created by omero-qa
 http://qa.openmicroscopy.org.uk/qa/feedback/2305/ We did not manage to …
07:26 Ticket #1978 (BUG: internal repo fails with external registry) created by jmoore
In default.xml, the IceGrid registry is collocated with blitz. When …

03/10/10:

21:07 Ticket #1977 (BUG : Stackoverflow errors on recursive maps) created by jmoore
ServiceHandler? and IceMapper? both handle recursive maps badly.
17:19 Changeset [6240] by bwzloranger
fix for ticket #1976
17:06 Ticket #1976 (BUG: HistoryTable Original Files not per experimenter) closed by bwzloranger
16:44 Changeset [6239] by atarkowska
#1732 - preparing the controller to merge 'mydata' and 'team' into the …
16:29 Ticket #1976 (BUG: HistoryTable Original Files not per experimenter) created by bwzloranger
Experimenters seem to be sharing the same original file. Update original …
15:20 SearchBridges edited by jmoore
(diff)
15:19 SearchBridges edited by jmoore
(diff)
15:06 Ticket #1907 (Abstract History DB interface) closed by bwzloranger
15:05 Changeset [6238] by bwzloranger
fixes for history table abstraction #1907
14:56 Changeset [6237] by cneves-x
Tweaking the omero.gateway test framework
14:55 Changeset [6236] by atarkowska
OMERO.web: - webadmin/create new group did not allow to choose read-only, …
12:53 Ticket #1975 (ISession methods for listing sessions) created by jmoore
ISession should provide: * getOpenSessions() * …
12:52 Ticket #1974 (Use Session.useragent for identifying active sessionss) created by jmoore
In order to identity active sessions, all clients should clearly mark …
12:45 Ticket #1973 (BUG: Base Date Query not always returning correct results) created by bwzloranger
Seems to be missing data for 'yesterday, weekly, monthly' results
07:42 SearchBridges edited by jmoore
(diff)

03/09/10:

15:43 Ticket #1972 (FLIM speed optimisation) created by dzmacdonald
* Wrapping the 'c' MPfit method may improve performance of the script * …
15:41 Ticket #1971 (FLIM add optimisations to improve accuracy of curve fit.) created by dzmacdonald
* The current FLIM script uses the sum of all pixels values in the noFret …
15:35 Ticket #1970 (FLIM in OMERO) created by dzmacdonald
In collaboration with the BioInformatics group in Dundee we will add FLIM …
15:23 WorkPlan/Collaborations edited by jburel
(diff)
15:22 Ticket #1969 (Collaborations) created by jburel
== Description == On this page, we gather activities related the various …
15:21 Changeset [6235] by jmoore
rem #1855:0.5d - timed-out sessions now correctly close services …
15:20 Changeset [6234] by jmoore
rem #1855:0.5d - timed-out sessions now correctly close services …
12:07 Changeset [6233] by bwzloranger
fix for missing methods in ImporterConfig? & IniFileLoader?
11:47 Ticket #1916 (ROI movie) closed by wmoore
fixed: (In [6232]) Changes to ROI movie figure, closes #1916. Also split …
11:47 Changeset [6232] by wmoore
Changes to ROI movie figure, closes #1916. Also split roiFigure.py into 2 …
09:50 WorkPlan/NDimensionalData edited by dzmacdonald
(diff)
09:38 Ticket #1968 (BUG: ResourceError) created by omero-qa
 http://qa.openmicroscopy.org.uk/qa/feedback/2306/
09:37 WorkPlan/NDimensionalData edited by dzmacdonald
(diff)
08:37 Ticket #1967 (Unknown companion format throws ValidationException) created by jmoore
 http://lists.openmicroscopy.org.uk/pipermail/ome-devel/2010-March/001560.ht

03/08/10:

21:25 Ticket #1966 (Reduce number of object instances) created by jmoore
Looking at a heap dump, there are any number of instances with large …
20:48 WorkPlan/NDimensionalData created by dzmacdonald
20:06 Ticket #1965 (Add central object locking service) created by jmoore
This should allow locking access to various objects (thumbnails, rendering …
20:04 Ticket #1964 (Centralize all thread creation in server) created by jmoore
* There should only be a minimal number of executors (cF. `ExecutorService?
20:03 Ticket #1963 (Concurrency improvements) created by jmoore
19:02 Ticket #1581 (Make client logging configurable) reopened by jmoore
Brian, can you please review why this is closed? I was thinking that the …
18:57 Ticket #1962 (BUG: TempFileManager leaves .lock_*.tmp files still) created by jmoore
[…]
17:33 PythonClientCodeExamples edited by wmoore
(diff)
17:25 Changeset [6231] by bwzloranger
first pass at #1907 rem .25
16:58 Ticket #1961 (Increment details.version from RFS and RPS.close()) created by jmoore
This will allow other services to notice that the binary data has been …
16:44 Ticket #1960 (Flesh out raw pixels store documentation) created by cxallan
The raw pixels store documentation is a bit lacking, particularly in …
15:58 HcsPreview edited by jburel
(diff)
15:46 Changeset [6230] by jburel
Added methods and static fields
14:45 Changeset [6229] by wmoore
showRoiDuration option for getTimeLabels()
13:56 Ticket #1959 (Creating connection in the same context (the same active group) by the ...) created by atarkowska
Basically, when exception appeared and connection was recreated connection …
13:50 Ticket #1958 (Checkout omeroweb_sandbox branch) created by atarkowska
There is checkout omeroweb_sandbox branch, play around and see if it looks …
13:45 Ticket #1956 (Website: Demo account summary) closed by atarkowska
fixed
13:35 Ticket #1957 (Correct Job.message and status usage) created by jmoore
Currently, the use of the "message" field and the closed status of jobs is …
13:31 Ticket #1956 (Website: Demo account summary) created by atarkowska
This following page outline standard working practice on how to create and …
13:27 Ticket #1955 (BUG: Pagination does not reload content) created by atarkowska
Pagination link does not reload the content. Still links point to the old …
12:04 Ticket #1914 (ROI Figure improvements) closed by wmoore
fixed: Fixed. r6228. Still have to ask user about 'Labels every row'?
12:01 Changeset [6228] by wmoore
Changes to merged channel labels in ROI script. Still need user decision …
11:36 Ticket #1954 (BUG: XSLT AcquiredPixels & Channel ID in 2008-09-to-2009-09) created by ajpatterson
The XSLT transform 2008-09-to-2009-09 requires AcquiredPixels to do it's …
09:43 Changeset [6227] by jmoore
see #1942 - adds OmeroImporter files to lib/server/services.jar
08:54 Ticket #1953 (Guarantee UNIQUE script names) created by jmoore
The may only be marginally possible for the internal repository, but …
08:19 Ticket #1952 (Add script author info) created by jmoore
See  shoola:#1134 and  shoola:#1148

03/07/10:

19:15 Ticket #1951 (BUG: exception after a single row is added to a recreated table) closed by jmoore
fixed: (In [6226]) fix #1951 - another workaround for fromrows
19:15 Changeset [6226] by jmoore
fix #1951 - another workaround for fromrows

03/05/10:

15:32 Ticket #1915 (Split View Figure) closed by wmoore
fixed: r6225
15:26 Changeset [6225] by wmoore
Fixes Channel order in #1915
14:58 Changeset [6224] by wmoore
Docs and typos
14:35 Changeset [6223] by cxallan
Slightly more reasonable exception message and test case fix. (See #1801)
14:22 Changeset [6222] by cxallan
Unit tests for other usage. Fixed a bug preventing first time settings …
14:13 Ticket #1951 (BUG: exception after a single row is added to a recreated table) created by bwzloranger
Creating a single 'row' of data in a new table will throw an exception …
13:50 Ticket #1851 (Upload an EMAN2 bdb single-particle workflow hierarchy to OMERO) closed by wmoore
fixed: (In [6221]) Upload the root level images from EMAN2 folder. Closes #1851
13:50 Changeset [6221] by wmoore
Upload the root level images from EMAN2 folder. Closes #1851
13:47 Changeset [6220] by wmoore
New method: uploadPlaneByRow for script_utils.py
13:34 Changeset [6219] by cxallan
test-compile build now runs to completion. (See #1942)
12:20 Ticket #1950 (Big Images) created by wmoore
Maybe we've got this somewhere else, but I can't find it just now, and I …
11:51 Changeset [6218] by cblackburn
Reverted to r6216 version of CommandLineImporter.java
11:47 Ticket #1949 (Poster for Crief Hydro) created by ajpatterson
Updating the poster for the session at the collage symposium.
11:15 Changeset [6217] by cblackburn
Addresses #1942; repository code moved, dependencies reconfigured.
10:55 Changeset [6216] by jmoore
rem #1946:1d - Initial Table.update(data) method
10:25 Ticket #1580 (Unify all command-line logins) closed by jmoore
fixed: r6215 closes. See #1948 and other #838 tasks.
10:24 Changeset [6215] by jmoore
closes ticket:1580 - Modifying populate_roi.py. (See ticket:1948)
10:20 Ticket #1948 (Allow re-using plugin login in non-plugins) created by jmoore
As a follow-up to #1580, an adapter should be added to populate_roi.py, …
10:19 Ticket #1947 (Clean up OmeroCli help messages) created by jmoore
As a byproduct of #1580, the help documentation for the various login …
10:00 Ticket #1946 (Add update functionality to omero tables) created by bwzloranger
add sort of method to allow 'updates' to existing columns/rows within …
09:57 Ticket #1945 (Add update functionality to new history tables) created by bwzloranger
Currently using stub methods which will not update. Once omero.tables …
09:56 Changeset [6214] by jmoore
ticket:1935 - cleaning up old sessions
09:55 Changeset [6213] by jmoore
ticket:1580 - fixing login logic and refactoring scripts
09:55 Changeset [6212] by jmoore
ticket:1944 - moved adduser.py to user.py OmeroCli plugin
09:39 Ticket #1944 (Move omero/adduser.py to plugin) created by jmoore
The adduser.py script could be made into a plugin.
09:37 Ticket #1943 (Permit not saving sessions to ~/omero/sessions) created by jmoore
Perhaps a user doesn't want a persistent login. Should this be the …
09:05 Ticket #1942 (Reconfigure build to allow repositories to access importer libs) created by cblackburn
To provide a list of import candidates to clients PublicRepository? needs …
08:53 Ticket #1941 (Review perms workplan page) created by jmoore
As a last item for #1434, the various point on WorkPlan/Permissions should …
08:46 WorkPlan/Permissions edited by jmoore
(diff)
08:45 Ticket #1940 (Allow users to login to public groups) created by jmoore
Currently logging in to a group requires membership, but it is also …
08:33 Ticket #1939 (Document use of more advanced encrypton schemes) created by jmoore
08:33 Ticket #1938 (Enable flag for using SSL for all methods, not just login) created by jmoore
08:33 Ticket #1937 (Add ADH as default transport) created by jmoore
The primary challenge is testing that the configuration can gracefully …
08:30 WorkPlan/SecureLogin edited by jmoore
(diff)
08:30 Ticket #1936 (Secure Login and Ldap improvements) created by jmoore
== Login == For logging in to OMERO over hostile networks …
08:27 WorkPlan/Permissions edited by jmoore
(diff)
08:20 Ticket #1935 (bin/omero login should cleanup sessions) created by jmoore
The ~/omero/sessions directory can quickly become filled.
00:44 Changeset [6211] by carlos
Getting the viewers (mini and full) working again.
00:43 Changeset [6210] by carlos
Adding FileAnnotationWrapper? and some debug points.
00:32 Changeset [6209] by carlos
merging trunk -r6123:6208

03/04/10:

16:42 Ticket #1934 (Import of ".map" files as with MRC importer) created by wmoore
Need to add the ".map" extension to be recognised by the MRC importer …
16:18 Ticket #1739 (EM software integrated with OMERO) closed by wmoore
duplicate: This content moved here: …
16:13 WorkPlan/FileRepositoriesAndOmeroFs edited by cblackburn
(diff)
16:10 Ticket #1933 (Add support for simple FS-based directory listing to Insight) created by cblackburn
Using file repository services and OMERO.fs to avoid data duplication. As …
15:34 Ticket #1932 (EMAN2 functionality in OMERO) created by wmoore
Investigate the options for using OMERO as the image repository for single …
15:31 Ticket #1931 (BUG: Middle name not populated) created by atarkowska
When adding a middle name to a user in the WebAdmin? it doesn't seem to be …
15:29 Ticket #1930 (EM import) created by wmoore
Import of big images (4k x 4k and bigger) with high bit depth (32). …
15:29 Ticket #1929 (Permissions demo (Sprint 4)) created by jmoore
Various tasks which will fallout from testing. * If the admin renames …
15:27 Ticket #1928 (FAQ - Update Questions) created by ajpatterson
15:27 Ticket #1927 (Alternative Storage MongoDB) created by dzmacdonald
This page is the plan of work and tasks required to further test MongoDB …
15:26 Ticket #1926 (Server-side Import History) created by bwzloranger
15:24 Ticket #1925 (Agilo integration) created by atarkowska
15:23 Ticket #1924 (Collaborations) created by dzmacdonald
== Description == On this page, we gather activities related the various …
15:19 Ticket #1923 (Save ROI in Insight to MongoDB) created by dzmacdonald
Save ROI in insight in parallel to Postgres and MongoDB, investigate …
15:14 Ticket #1922 (Alternative Storage) created by dzmacdonald
Investigate MongoDB as an alternative storage, see AlternativeStorage
15:12 Ticket #1921 (Integrate FLIM script) created by dzmacdonald
Integrate FLIM scripts supplied by Pieta, others into OMERO
15:09 Ticket #1746 (Adjust exsting history functionality in Importer History to use ...) closed by bwzloranger
fixed
15:09 Ticket #1920 (Medical Imaging) created by dzmacdonald
Tayside Collaboration on brain scan. and also Integrate Adrias's scripts …
15:06 Ticket #1742 (Server-side Import History) closed by bwzloranger
fixed
15:05 Ticket #1919 (Server-side Import History) created by bwzloranger
14:57 Ticket #1918 (Merging Bio-formats cleanup to OMERO.importer) created by bwzloranger
13:37 WorkPlan/ElectronMicroscopy edited by wmoore
(diff)
13:37 WorkPlan/ElectronMicroscopy edited by wmoore
(diff)
13:30 Ticket #1917 (Electron Microscopy Preview support) created by wmoore
This is the central place to document …
13:11 Ticket #1850 (Figure Export improvements-2) closed by wmoore
fixed
12:56 Changeset [6208] by callan
#1801 Fixes issue with direct thumbnail retrieval. Test cases to come.
12:36 Ticket #1916 (ROI movie) created by wmoore
* Need a different dialog for movies of ROIs. * Use different scripts …
12:35 Ticket #1915 (Split View Figure) created by wmoore
Order of channel names in Split-View figure merged panel, should be sorted …
12:33 Ticket #1914 (ROI Figure improvements) created by wmoore
If width of ROI panels is same as primary image, don't add column labels? …
12:33 Ticket #1913 ('Team' and entire group) closed by atarkowska
fixed
12:33 Changeset [6207] by ola
#1913 fixed
12:31 Ticket #1913 ('Team' and entire group) created by atarkowska
'Team' needs to show entire group data as default
12:25 Ticket #1912 ('my account' update) created by atarkowska
If user is a group owner should see panel in 'myaccount' including new …
12:25 Ticket #1911 (XML: Linkage - new structure) created by ajpatterson
Decide on the model structure for the linking mechanism. Try in part to …
12:19 Ticket #1910 (XML: Linkage - Examples/Docs) created by ajpatterson
Write Linkage Examples and documentation
12:18 Ticket #1909 (XML: Linkage - Multi-Image support) created by ajpatterson
Update the model and update the existing transforms see: …
12:17 Ticket #1908 (XML: Linkage - ROI support) created by ajpatterson
Update the model and update the new ROI transforms
12:15 WorkPlan/ImporterServerSideHistory edited by bwzloranger
(diff)
12:14 Ticket #1907 (Abstract History DB interface) created by bwzloranger
The history DB interface to the client needs to be cleaned up and …
12:13 Ticket #1906 (XML: Multiple-Paths - transforms) created by ajpatterson
Write new transforms see also:  http://www.ome-xml.org/ticket/70
12:12 Ticket #1905 (XML: Multiple-Paths - update) created by ajpatterson
Update model with changes see also:  http://www.ome-xml.org/ticket/70
12:11 Ticket #1904 (XML: Multiple-Paths - structure) created by ajpatterson
see:  http://www.ome-xml.org/ticket/70
12:10 Ticket #1903 (XML: ROI - tagging) created by ajpatterson
see:  http://www.ome-xml.org/ticket/91
12:08 Ticket #1902 (XML: ROI - documentation) created by ajpatterson
see:  http://www.ome-xml.org/ticket/67
12:06 Ticket #1901 (XML: ROI - New Transforms) created by ajpatterson
Write new transforms to update schema. see also …
12:05 Ticket #1900 (XML: ROI - New Structure) created by ajpatterson
see:  http://www.ome-xml.org/ticket/108
11:54 Ticket #1899 (Figure Export improvements-2) created by wmoore
Second round of meeting with MP and IP for feedback on Figure export …
11:46 Ticket #1898 (XML: Plate Acquisition - documentation) created by ajpatterson
New SPW Documentation page
11:44 Ticket #1897 (XML: Plate Acquisition - transforms) created by ajpatterson
Write new transforms
11:44 Ticket #1896 (XML: Plate Acquisition - update) created by ajpatterson
Update the model
11:43 Ticket #1895 (XML: Plate Acquisition - structure) created by ajpatterson
Decide on new structure. See:  http://www.ome-xml.org/ticket/106
11:43 Ticket #1894 (Figure Export) created by wmoore
Need to make the Figure scripts robust enough for Preview release. Don't …
11:41 Ticket #1893 (XML: Light Source) created by ajpatterson
see  http://www.ome-xml.org/ticket/73
11:39 Ticket #1892 (XML: Detector - Changes) created by ajpatterson
see:  http://www.ome-xml.org/ticket/65
11:38 Ticket #1891 (XML: Detector - New Entity) created by ajpatterson
see:  http://www.ome-xml.org/ticket/50
11:35 Ticket #1890 (XML: Filter) created by ajpatterson
see:  http://www.ome-xml.org/ticket/63 New changes: Adding an abstract …
11:34 Changeset [6206] by will
Auto box-size selection for boxer.py script
11:33 Ticket #1889 (XML: N-Dimenisional Changes) created by ajpatterson
Making the changes to the schema once they have been decided.
11:32 Ticket #1888 (XML: N-Dimenisional Planing) created by ajpatterson
see:  http://www.ome-xml.org/ticket/112
11:30 Ticket #1887 (XML: FLIM) created by ajpatterson
See:  http://www.ome-xml.org/ticket/59
11:24 Ticket #1886 (BUG: Automatic action) created by atarkowska
Adding a ticket should automatically close a feedback
11:23 Ticket #1885 (BUG: 404 Error page redirect) created by atarkowska
If not logged in for a secure link, offer login
11:22 Ticket #1884 (XML: OriginalFile) created by ajpatterson
See:  http://www.ome-xml.org/ticket/58
11:22 Ticket #1883 (Server version) created by atarkowska
Add server_version to feedback.
11:21 Ticket #1882 (XML: Easy Access Values) created by ajpatterson
See:  http://www.ome-xml.org/ticket/69
11:20 Ticket #1881 (Layout) created by atarkowska
- Hide classpath by default, and make comment larger and more prominent.
11:20 Ticket #1880 (XML: Pre-Release Checklist) created by ajpatterson
For info:  http://www.ome-xml.org/ticket/115
11:18 Ticket #1879 (BUG: Skyking ticket does not work) created by atarkowska
Adding existing tickets from skyking fails.
11:17 Ticket #1878 (Summary field) created by atarkowska
Allow longer summary fields
11:15 Ticket #1877 (Ticket version) created by atarkowska
Once QA knows the current version, tickets should go into that version and …
11:14 Ticket #1876 (Filters) created by atarkowska
Should be able to filter entries based on whether or not they have tickets …
11:13 Ticket #1875 (Download/Upload the file) created by atarkowska
Should be able to download file feedback directly from the site or provide …
11:13 Ticket #1874 (XML: Review examples before release) created by ajpatterson
Info at:  http://www.ome-xml.org/ticket/60
11:12 Ticket #1873 (List of formats, files per format) created by atarkowska
For testing, would be most useful if we could do: […] Then for each …
11:11 Ticket #1872 (XML: EM Extensions) created by ajpatterson
Info at:  http://www.ome-xml.org/ticket/107
11:10 Ticket #1871 (BUG: Access to the feedback) created by atarkowska
Once a feedback has a ticket, it might need to be made either PUBLIC or at …
11:09 Ticket #1870 (Merging of feedbacks) created by atarkowska
allow merging of feedbacks or otherwise marking as "duplicates"
11:09 Ticket #1869 (Attach outputs to inputs of related scripts) created by jmoore
11:04 Ticket #1672 (Implement 'usermode' processor to allow testing scripts locally) closed by jmoore
fixed
10:41 Ticket #1868 (XML: General Improvements) created by ajpatterson
This is a ticket holder for the General Tasks on …
10:40 Ticket #1867 (XML: Core Model Evolution) created by ajpatterson
This is a ticket holder for the Core Model Evolution story on …
10:34 Ticket #1866 (OMERO.qa improvement) created by atarkowska
According to new way of managing development processes OMERO.qa needs to …
10:20 Ticket #1865 (XML: Instrument Model Evolution) created by ajpatterson
This is a ticket holder for the Instrument Model Evolution story on …
10:17 Ticket #1864 (XML: PlateAcquisition) created by ajpatterson
This is a ticket holder for the Plate Acquisition story on …
10:15 Ticket #1863 (XML: Linkage) created by ajpatterson
This is a ticket holder for the Linkage story on …
10:13 Ticket #1862 (XML: Multiple-Paths) created by ajpatterson
This is a ticket holder for the Multiple-Paths story on …
10:12 Ticket #1861 (XML: ROI) created by ajpatterson
This is a ticket holder for the ROI story on …
09:20 Ticket #1860 (Scripts Cleanup) created by jmoore
Various tasks which are needed for cleaning up processor.py and friends
09:19 Ticket #1859 (Scripts.ice documentation) created by jmoore
All methods and types should be more fully explained in the slice file.
08:34 Ticket #1858 (Encourage script writer style) created by jmoore
For lists and map parameters, the UI has no way of knowing the type of …
08:33 Ticket #1857 (Notification to clients on process completion) created by jmoore
08:25 Ticket #983 (Implement processor registration) closed by jmoore
duplicate
08:04 WorkPlan/ScriptingImprovements edited by jmoore
(diff)
08:03 Ticket #1856 (ScriptingImprovements) created by jmoore
The planned improvements are geared toward making the writing and testing …
07:30 Changeset [6205] by jmoore
ticket:1580 - Adding missing file util/sessions.py
07:19 Changeset [6204] by jmoore
ticket:1580 - Fixing lossed parameters to login
07:19 Changeset [6203] by jmoore
OmeroPy : Adding logs_library for working with var/log files

03/03/10:

19:21 Ticket #1801 (Thumbnail / Rendering will need to be permissions-aware) closed by cxallan
fixed: Should be complete with nicer exception messages in r6202.
19:00 Changeset [6202] by callan
#1801 Nicer exceptions and test cases to cover them.
18:42 Ticket #1855 (Possible file descriptor leak) created by jmoore
Needs significant testing to find where the leak could be. == Results: == …
18:00 Changeset [6201] by callan
#1801 Fixing a couple bugs related to setPixelsId() and owner query usage. …
16:33 Ticket #1785 (FAQ and mailing list) closed by ajpatterson
15:58 Ticket #1852 (OmeroCpp build broken due to -Werror) closed by jmoore
fixed: r6180
15:46 Changeset [6200] by jmoore
SharedResources? : Removing deprecation
15:46 Changeset [6199] by jmoore
ticket:1672 - usermode processor improvements and refactorings (replace)
15:46 Changeset [6198] by jmoore
ticket:1672 - Refactoring for AcceptCallback filtering
15:46 Changeset [6197] by jmoore
OmeroPy : Fixing warning on shutdown in servants
15:46 Changeset [6196] by jmoore
ticket:1672 - Various SharedResources? improvements and refactorings
15:46 Changeset [6195] by jmoore
ticket:1672 - Refactoring Details for invocation-based group context
15:46 Changeset [6194] by jmoore
ticket:1672 - usermode processor improvements and refactorings
15:46 Changeset [6193] by jmoore
ticket:1580 - Conversion to argparse for OmeroCli login handling
15:46 Changeset [6192] by jmoore
ticket:1672 - usermode improvements, including launch and other OmeroCli
15:46 Changeset [6191] by jmoore
Minor fixes
15:46 Changeset [6190] by jmoore
ticket:860 : Disabling unused JobNotification
15:46 Changeset [6189] by jmoore
ticket:1672 - Adding ProcessorAcceptsCallback and servant setProxy
15:46 Changeset [6188] by jmoore
Test correction in makePixels
15:46 Changeset [6187] by jmoore
OmeroPy : Minor additions
15:46 Changeset [6186] by jmoore
ticket:1672 - Improved script plugin plus tests
15:46 Changeset [6185] by jmoore
ticket:1580 - Improved OmeroCli sessions plugin plus tests
15:46 Changeset [6184] by jmoore
ticket:1580 - Rework of OmeroCli Arguments infrastructure incl. logins
15:46 Changeset [6183] by jmoore
OmeroPy : Refactoring out omero.util.get_user_dir()
15:46 Changeset [6182] by jmoore
ticket:1822 - Passing test
15:46 Changeset [6181] by jmoore
ticket:1672 - Adding processor registration for usermode
15:46 Changeset [6180] by jmoore
ticket:1852 - Removing -Werror from compile flags See: …
15:46 Changeset [6179] by jmoore
OmeroPy : Reworking of omero.client.download
15:46 Changeset [6178] by jmoore
OmeroCli : Initial work on __edit method
15:46 Changeset [6177] by jmoore
OmeroPy : Returning false on client check if communicator is missing
15:46 Changeset [6176] by jmoore
OmeroCli : Whitespace handling on Windows
15:46 Changeset [6175] by jmoore
Various tests
15:46 Changeset [6174] by jmoore
OmeroTables : quieting tests
15:46 Changeset [6173] by jmoore
ImportLibrary : Minor change plus test
15:46 Changeset [6172] by jmoore
OmeroTables : Adding example to slice file
15:46 Changeset [6171] by jmoore
OmeroPy : Adding logger instance
15:46 Changeset [6170] by jmoore
Fixing timeline test
15:46 Changeset [6169] by jmoore
OmeroSearch : Adding more docs to omero.properties
15:23 OmeroPy edited by jmoore
(diff)
15:21 OmeroPy edited by jmoore
(diff)
15:13 OmeroPy edited by jmoore
(diff)
14:14 Ticket #1854 (Permissions) created by atarkowska
Default permissions were lowered to rw---- in previous versions because of …
14:04 Ticket #1852 (OmeroCpp build broken due to -Werror) created by jmoore
 http://lists.openmicroscopy.org.uk/pipermail/ome-devel/2010-February/001557
14:01 Ticket #1851 (Upload an EMAN2 bdb single-particle workflow hierarchy to OMERO) created by wmoore
E.g. root * images.mrc * particles (folder) * e2boxercache (folder) …
13:02 WorkPlan/ElectronMicroscopy edited by wmoore
(diff)
13:00 Ticket #1846 (Upload an EMAN2 bdb layer to OMERO) closed by wmoore
fixed
12:27 Changeset [6168] by will
Various small changes to a few scripts.
12:25 Changeset [6167] by will
typo
12:24 Changeset [6166] by will
Allow namespace for FilAnnotations? in script_utils.py
12:17 Changeset [6165] by callan
#1801 Ported version of thumbnail bean and working thumbnail context.
12:16 Changeset [6164] by callan
Some more error checking in the managed context test.
11:09 Changeset [6163] by will
Metadata from EMAN2 bdb added as Original Metadata to imported images

03/02/10:

20:55 Changeset [6162] by will
Script for uploading EMAN2 bdb images to OMERO
19:58 Ticket #1850 (Figure Export improvements-2) created by wmoore
This task is now a User Story …
16:25 Ticket #1849 (omeroweb's getUsage() likely leads to OOM) created by jmoore
in omeroweb/extlib/gateway.py loading all pixels likely leads OOM …
15:08 Ticket #1848 (Removing user from "users" group) created by jburel
Attempt to de-activate a user by delete the experimenter-group link. as …
13:17 Ticket #1847 (Share and publish) created by atarkowska
13:15 Ticket #1826 (Searching and filters) closed by atarkowska
13:15 Changeset [6161] by ola
OMERO.web - #1825, - #1826.
11:57 WorkPlan/ImportInsight edited by jburel
(diff)
11:47 WorkPlan/FigureExport edited by jburel
(diff)
10:52 WorkPlan/FileRepositoriesAndOmeroFs edited by jburel
(diff)
10:20 WorkPlan/ElectronMicroscopy edited by wmoore
(diff)
10:17 Ticket #1846 (Upload an EMAN2 bdb layer to OMERO) created by wmoore
This would have to be a local running script (not scripting service) that …
10:08 Ticket #1845 (Scripting and permissions) created by jburel
Loading a script and try to access the parameters using the …
09:59 OmeroPy/ScriptingServiceGuide edited by wmoore
(diff)

03/01/10:

20:40 Changeset [6160] by callan
#1801 Initial version of thumbnail context (unused at the moment)
17:27 WorkPlan/ElectronMicroscopy edited by wmoore
(diff)
17:16 Ticket #1844 (CTF correction by EMAN2) created by wmoore
Use EMAN2 to do CTF correction on a bunch of images in OMERO. This is the …
17:08 WorkPlan/ElectronMicroscopy edited by wmoore
(diff)
15:51 Ticket #1837 (Export of images in EM formats) closed by wmoore
fixed: r6158, r6159 Currently script takes imageIds parameter and attaches the …
15:46 Changeset [6159] by will
Better handling of known / unknown formats, printing etc.
15:23 WorkPlan/FileRepositoriesAndOmeroFs edited by jburel
(diff)
15:22 WorkPlan/FileRepositoriesAndOmeroFs edited by jburel
(diff)
15:17 Ticket #1842 (Lucene seems to not index screens) created by atarkowska
After Luke check up there is no 'omero.model.screen.Screen' in …
15:00 Changeset [6158] by will
Script for saving files in EM formats using EMAN2
14:49 Ticket #1841 (Geometry background process never ends) created by atarkowska
Is processing shapes every second and never stops. […]
14:29 Ticket #1840 (Processor : remove JobNotification) created by jmoore
The JobNotification class can be removed in favor of using the …
14:23 Ticket #1839 (Processor : on session close, remove session.) created by jmoore
14:06 Ticket #1838 (Ubuntu 9.10 mod_python and OMERO.web slow?) created by cxallan
It was reported on the forums …
13:28 Changeset [6157] by will
uploadAndAttachFile() won't fail if format not known. Use text/plain
13:22 WorkPlan/FileRepositoriesAndOmeroFs edited by jburel
(diff)
12:42 Changeset [6156] by callan
Fixed thumbnail store white space.
12:00 Changeset [6155] by callan
Fixed test case that may not compile due to dereferencing issues.
10:05 WorkPlan/ElectronMicroscopy edited by wmoore
(diff)
10:04 Ticket #1837 (Export of images in EM formats) created by wmoore
Export images with a single T and C as EM images. Use EMAN2 save …
09:59 WorkPlan/ElectronMicroscopy edited by cxallan
(diff)
09:57 Ticket #1836 (Block based import) created by cxallan
The planar write methods in the importer should be updated to write in a …
09:55 Changeset [6154] by ola
missed javascript
09:22 WorkPlan/Permissions edited by jburel
(diff)
09:21 WorkPlan/Permissions edited by jburel
(diff)
08:22 Ticket #1830 (Failure in .newTable() method after deleting an older original file.) closed by jmoore
fixed: Fixed by r6153
08:21 Changeset [6153] by jmoore
ticket:1830 - Regression on non-existing file, added in r6114 (#1800) * …

02/28/10:

10:36 WorkPlan/Permissions edited by jburel
(diff)
10:29 Ticket #1829 (Annotations Loading and Permissions) closed by jburel
fixed: r6152
10:28 Changeset [6152] by jburel
closed #1829 and fixed documentation
10:24 WorkPlan/Permissions edited by jburel
(diff)

02/26/10:

18:03 Ticket #1272 (OmeroCpp build on Windows fails) closed by jmoore
duplicate: #1596 duplicates this task.
18:00 Ticket #1835 (OmeroCpp Improvements) created by jmoore
Collection of various OmeroCpp tasks required for 4.2
17:07 Ticket #1699 (Add "Forums" to help menu of importer like in insight) closed by bwzloranger
fixed
17:06 Ticket #1691 (Default button on close should be "Quit" not "Don't quit") closed by bwzloranger
fixed
16:35 Changeset [6151] by ola
missed for r6150
16:34 Ticket #1834 (Buttons, links and others) closed by atarkowska
fixed: r6150
16:33 Changeset [6150] by ola
OMERO.web: - #1834, fixed
16:32 Ticket #1834 (Buttons, links and others) created by atarkowska
15:57 PythonClientCodeExamples edited by wmoore
(diff)
15:55 Ticket #1833 (Feedback 2297:deleteExperimenter) created by omero-qa
 http://qa.openmicroscopy.org.uk/qa/feedback/2297/ Exception Location: …
15:53 PythonClientBeginners edited by wmoore
(diff)
15:46 OmeroClients edited by wmoore
(diff)
15:38 Ticket #1832 (Bug: OME-XML out of memory exception) created by omero-qa
 http://qa.openmicroscopy.org.uk/qa/feedback/2289/
15:36 OmeroPy edited by wmoore
(diff)
15:36 Ticket #1831 (BUG:Feedback 1069) created by omero-qa
AttributeError? at /webclient/action/addnew/ 'NoneType?' object has no …
14:55 Ticket #1830 (Failure in .newTable() method after deleting an older original file.) created by bwzloranger
Deleting an originalFile and then reinitializing it using …
14:54 OmeroApi edited by wmoore
(diff)
14:40 OmeroApi edited by wmoore
(diff)
14:35 OmeroApi edited by wmoore
(diff)
14:31 OmeroApi edited by wmoore
(diff)
13:43 OmeroApi edited by wmoore
(diff)
13:11 ExtendingOmero edited by wmoore
(diff)
12:41 WorkPlan/Permissions edited by jburel
(diff)
12:37 Ticket #1829 (Annotations Loading and Permissions) created by jburel
Review the implementation of the loadAnnotation method in …
12:36 WorkPlan/LdapImprovements edited by cxallan
(diff)
12:34 Ticket #1828 (LDAP authentication restriction via groups does not work) created by cxallan
When using a groupOfUniqueNames as omero.ldap.groups the …
12:22 PythonClientBeginners edited by wmoore
(diff)
12:22 PythonClientBeginners edited by wmoore
(diff)
12:09 OmeroPy/ScriptingServiceGuide edited by wmoore
(diff)
12:05 OmeroPy/ScriptingServiceGuide edited by wmoore
(diff)
11:52 OmeroPy/ScriptingServiceGuide edited by wmoore
(diff)
11:40 OmeroPy/ScriptingServiceGuide edited by wmoore
(diff)
11:22 OmeroPy/ScriptingServiceGuide edited by wmoore
(diff)
10:34 Changeset [6149] by ola
OMERO.web: - #1826, missed files from r6146 - #1827, minor fixes
10:20 WorkPlan/Permissions edited by jburel
(diff)
10:19 OmeroPy/ScriptingServiceGuide created by wmoore
10:17 Changeset [6148] by will
Adding upload script to Examples
10:16 WorkPlan/FileRepositoriesAndOmeroFs edited by jburel
(diff)
10:16 WorkPlan/FileRepositoriesAndOmeroFs edited by jburel
(diff)
09:42 PythonClientCodeExamples edited by wmoore
(diff)
08:59 Ticket #1827 (Annotation support) closed by atarkowska
08:59 Ticket #1825 (History/calendar update) closed by atarkowska
08:37 Ticket #1827 (Annotation support) created by atarkowska
Comments, editability, history etc. Users like some features of the …
08:37 Ticket #1826 (Searching and filters) created by atarkowska
08:36 Ticket #1825 (History/calendar update) created by atarkowska
00:07 Changeset [6147] by carlos
UI tweaks to the full viewer.

02/25/10:

21:34 WorkPlan/FileRepositoriesAndOmeroFs edited by jburel
(diff)
21:21 WorkPlan/FileRepositoriesAndOmeroFs edited by jburel
(diff)
21:16 WorkPlan/FileRepositoriesAndOmeroFs edited by jburel
(diff)
18:22 WorkPlan/FileRepositoriesAndOmeroFs edited by jburel
(diff)
17:48 WorkPlan/FileRepositoriesAndOmeroFs edited by jburel
(diff)
17:41 Changeset [6146] by ola
OMERO.web - fist stage of searching changes
16:47 PythonClientCodeExamples edited by wmoore
(diff)
16:47 WorkPlan/Collaborations edited by dzmacdonald
(diff)
16:25 PythonClientCodeExamples edited by wmoore
(diff)
16:25 WorkPlan/OmeroWebUI edited by atarkowska
(diff)
16:25 WorkPlan/OmeroWebUI edited by atarkowska
(diff)
16:16 PythonClientCodeExamples edited by wmoore
(diff)
13:57 PythonClientCodeExamples edited by wmoore
(diff)
13:47 PythonClientCodeExamples edited by wmoore
(diff)
13:37 Changeset [6145] by jburel
added support for images
12:46 PythonClientCodeExamples edited by wmoore
(diff)
12:37 PythonClientCodeExamples edited by wmoore
(diff)
12:00 Changeset [6144] by donald
Added more doc, fixed bugs.
11:58 WorkPlan/FileRepositoriesAndOmeroFs edited by jburel
(diff)
11:44 WorkPlan/AlternativeStorageMongoDB edited by dzmacdonald
(diff)
11:42 WorkPlan/AlternativeStorageMongoDB edited by dzmacdonald
(diff)
11:28 WorkPlan/AlternativeStorageMongoDB edited by jburel
(diff)
11:28 WorkPlan/FigureExport edited by wmoore
(diff)
11:25 Changeset [6143] by will
Editing scripting examples
11:16 PythonClientCodeExamples created by wmoore
11:15 Changeset [6142] by will
Examples for using the scripting service
11:10 WorkPlan/RoiStorage edited by jburel
(diff)
11:10 WorkPlan/ImporterBugFixes edited by bwzloranger
(diff)
11:08 WorkPlan/ImporterMinorAdditions edited by bwzloranger
(diff)
11:07 WorkPlan/ImporterServerSideHistory edited by bwzloranger
(diff)
10:28 PythonClientBeginners edited by wmoore
(diff)
10:11 PythonClientBeginners edited by wmoore
(diff)
09:00 WorkPlan/ScriptingImprovements edited by jburel
(diff)
08:58 WorkPlan/FigureExport edited by jburel
(diff)
08:57 WorkPlan/FigureExport edited by jburel
(diff)
08:55 WorkPlan/FileRepositoriesAndOmeroFs edited by jburel
(diff)
08:54 WorkPlan/FileRepositoriesAndOmeroFs edited by jburel
(diff)
08:53 WorkPlan/FileRepositoriesAndOmeroFs edited by jburel
(diff)
08:47 WorkPlan/Permissions edited by jburel
(diff)
08:41 WorkPlan/Permissions edited by jburel
(diff)
01:04 Changeset [6141] by carlos
nginx config template was missing client_body_temp_path for POST data temp …
00:30 Changeset [6140] by carlos
Allow setting ICE_CONFIG through environment var

02/24/10:

17:38 Changeset [6139] by ola
OMERO.web: - history, fixed
17:24 Changeset [6138] by cblackburn
Changes to methods added in r6077 to return files AND directories.
15:39 WorkPlan/FileRepositoriesAndOmeroFs edited by jburel
(diff)
14:03 WorkPlan/Permissions edited by jburel
(diff)
13:31 Changeset [6137] by ola
OMERO.web: - unused files
13:29 Changeset [6136] by ola
experimenter/photo namespace created
12:21 Ticket #1822 (permissions and ownership) closed by jmoore
fixed: Logged in as root, found a user and tried to edit first name: In the log: …
11:21 WorkPlan/FileRepositoriesAndOmeroFs edited by cblackburn
(diff)
11:20 Changeset [6135] by cblackburn
Interface for handling image objects with some dummy implementation for …
10:38 Changeset [6134] by ola
more update for r6131

02/23/10:

19:35 Changeset [6133] by carlos
Creating a wrapper for jquery's ajax call, which calls the same callback …
17:09 Changeset [6132] by donald
Added more documentation on methods, fixed bugs.
16:52 Changeset [6131] by ola
OMERO.web - icon and table view fixes - annotation forms fixes - ui …
12:46 Changeset [6130] by will
Roi script fig legend print indexes fix.
11:33 Ticket #1822 (permissions and ownership) created by jburel
Context: * user 1 (login name is user1) is owner of private …
11:20 WorkPlan/HCSData edited by jburel
(diff)
11:19 WorkPlan/FileRepositoriesAndOmeroFs edited by jburel
(diff)
11:18 WorkPlan/Permissions edited by jburel
(diff)
11:15 Ticket #1821 (Create OME-TIFF examples) created by ajpatterson
11:15 Ticket #1820 (Create OME-XML examples) created by ajpatterson
==== Initial List ==== * Minimal * SA example with sensible data in it …
11:14 Ticket #1819 (Define list of ome-xml and ome-tiff examples needed) created by ajpatterson
==== XML Examples ==== * Minimal * SA example with sensible data in it …
11:09 WorkPlan/Permissions edited by jburel
(diff)
11:09 Ticket #1818 (Create example OME-XML and OME-TIFF files) created by ajpatterson
A collection of valid and invalid example files to use for both unit tests …
09:22 Ticket #1817 (Permissions : Keep track of previous security context) created by jmoore
ServiceFactory or SessionManageImpl instances could keep track of the …
07:58 Changeset [6129] by jmoore
ticket:1731 - Attempted fix for startup issue reported by J-M

02/22/10:

19:03 Ticket #1816 (Support BlitzGateway(client)) created by jmoore
It would be nice if one could add a wrapper to an existing omero.client …
18:47 WorkPlan/Permissions edited by jmoore
(diff)
16:25 Ticket #1790 (Issues with cleanse.py on Windows) closed by cxallan
invalid: Tested on Windows, seems to be working fine. Re-open as necessary.
16:03 Changeset [6128] by will
Handy script for uploading scripts to the server
16:00 Changeset [6127] by carlos
merged trunk -r6114:6123
14:18 WorkPlan/Permissions edited by jmoore
(diff)
14:11 WorkPlan/Permissions edited by jburel
(diff)
10:53 Ticket #1815 (Permissions : Consider an "IAdmin2" interface more inline with group ...) created by jmoore
After the work on #1434, it may make sense to have a second admin …
10:48 WorkPlan/ScriptingImprovements edited by jmoore
(diff)
10:34 Ticket #1814 (Docs : correct timeout examples) created by jmoore
 https://openmicroscopy.org/community/viewtopic.php?f=6&t=320&p=882#p882
10:30 Ticket #1813 (Tables : Add dropTable and other high-level methods) created by jmoore
* dropTable * copyTable * …
10:16 Changeset [6126] by ola
getDate should be available for each of the objects, not only ImageWrapper?
10:01 WorkPlan/Permissions edited by jburel
(diff)
08:30 Changeset [6125] by jmoore
ticket:1811 - initial passing test
08:30 Changeset [6124] by jmoore
ticket:1731 - Added PermissionMismatchGSV exception
08:30 Changeset [6123] by jmoore
ticket:1801 - Reverting change to setRenderingDefId

02/21/10:

19:15 Ticket #46 (Provided search functionality should be keyed to user's ability/context.) closed by jmoore
fixed: Jean-Marie, this is ticket from early in the search days. I'm closing it, …
19:14 Ticket #24 (Search for arbitrary objects) closed by jmoore
fixed: Already implemented.

02/19/10:

15:01 WorkPlan/OmeroWebUI edited by atarkowska
(diff)
15:01 WorkPlan/HCSData edited by atarkowska
(diff)
14:37 Ticket #1812 (BUG: About box duplicating text entry when reselected) created by bwzloranger
The about box in the importer adds a duplicates the version text every …
13:48 WorkPlan/AlternativeStorageMongoDB edited by dzmacdonald
(diff)
13:46 x1.csv attached to WorkPlan/AlternativeStorageMongoDB by dzmacdonald
13:46 Changeset [6122] by will
Edited parameter list in-line with SplitViewFigure? script
13:46 WorkPlan/AlternativeStorageMongoDB edited by dzmacdonald
(diff)
13:31 WorkPlan/AlternativeStorageMongoDB edited by dzmacdonald
(diff)
13:26 insertdata.py attached to WorkPlan/AlternativeStorageMongoDB by dzmacdonald
13:22 WorkPlan/AlternativeStorageMongoDB edited by dzmacdonald
(diff)
12:54 WorkPlan/FigureExport edited by jburel
(diff)
11:14 WorkPlan/Permissions edited by jburel
(diff)
11:13 WorkPlan/Permissions edited by jburel
(diff)
11:00 WorkPlan/Permissions edited by jburel
(diff)
10:39 WorkPlan/OmeroWebUI edited by atarkowska
(diff)
10:35 WorkPlan/OmeroWebUI edited by atarkowska
(diff)
10:27 WorkPlan/Permissions edited by atarkowska
(diff)
10:25 WorkPlan/Permissions edited by atarkowska
(diff)
09:37 WorkPlan/FileRepositoriesAndOmeroFs edited by cblackburn
(diff)
04:37 Changeset [6121] by carlos
weblitz-viewport now gets the rdef default Z and T instead of assuming …
04:36 Changeset [6120] by carlos
fixing typo
04:36 Changeset [6119] by carlos
making js function setImageDefaults always available and removing the …
04:35 Changeset [6118] by carlos
catching UnknownException? in function wrapper

02/18/10:

16:41 WorkPlan/FigureExport edited by wmoore
(diff)
16:24 WorkPlan/Permissions edited by jburel
(diff)
16:23 WorkPlan/Permissions edited by jburel
(diff)
16:17 WorkPlan/Permissions edited by jburel
(diff)
16:01 WorkPlan/ScriptingImprovements edited by jmoore
(diff)
15:56 Changeset [6117] by carlos
merge trunk -r6108:6114
15:55 WorkPlan/ScriptingImprovements edited by jmoore
(diff)
15:53 Changeset [6116] by carlos
Preventing changes to permissions when creating annotations, as access …
15:52 Changeset [6115] by carlos
Adding enableapp to omero web plugin
15:51 Ticket #1811 (Permissions: Moving user between groups) created by jburel
Scenario: * Create an experimenter: user1 as owner of group1 …
15:44 WorkPlan/Permissions edited by jmoore
(diff)
15:19 WorkPlan/Permissions edited by jburel
(diff)
15:18 WorkPlan/Permissions edited by jburel
(diff)
15:17 WorkPlan/Permissions edited by jburel
(diff)
15:16 WorkPlan/Permissions edited by jburel
(diff)
13:34 Ticket #1076 (IAdmin methods require logging into system group) closed by jmoore
fixed: Handled as a part of #1434 (specifically #445)
13:23 Ticket #1793 (Owner doesn't see members data in a private group) closed by jmoore
fixed: Assuming that this is a related to #1769 and is now fixed.
13:19 Ticket #1800 (OMERO.tables failing on string column saves.) closed by jmoore
fixed: r6114 has a fix. Padding your strings should no longer be necessary, …
13:18 Changeset [6114] by jmoore
ticket:1800 - Fixing StringColumnI.arrays()
13:12 WorkPlan/AlternativeStorageMongoDB edited by dzmacdonald
(diff)
11:57 Changeset [6113] by will
Working OK with 4k x 4k images
11:28 WorkPlan/AlternativeStorageMongoDB edited by dzmacdonald
(diff)
11:28 Ticket #1810 (MongoDB: Alternative Structures) created by dzmacdonald
MongoDB is a different architecture to contempory RDBM tables, as such it …
11:24 Ticket #1739 (EM software integrated with OMERO) reopened by wmoore
11:18 Ticket #1809 (MongoDB: Modify PopulateROI to upload plate data to MongoDB) created by dzmacdonald
Create a test framework, modifying Populateroi to upload plate data to …
11:12 WorkPlan/Collaborations edited by jburel
(diff)
11:08 Ticket #1808 (Medical Image: Script integration) created by jburel
Integrate script provided by Adria.
11:06 Ticket #1807 (FLIM script integration) created by jburel
Integrate script provided by Pieta for FLIM data
10:48 WorkPlan/AlternativeStorageMongoDB edited by dzmacdonald
(diff)
10:38 WorkPlan/RoiStorage edited by wmoore
(diff)
10:31 WorkPlan/RoiStorage edited by dzmacdonald
(diff)
10:30 WorkPlan/RoiStorage edited by dzmacdonald
(diff)
09:44 Ticket #1802 (Permissions : Indexer broken since doesn't log into proper group) closed by jmoore
fixed: r6112 essentially disables the security system for the "ome.fulltext" …
09:43 Changeset [6112] by jmoore
ticket:1802 - Refactoring secSystem to disable READ checks
08:56 Changeset [6111] by ola
OMERO.web - minor bugs fixed
01:40 Changeset [6110] by carlos
omero.gateway dbhelper allows for defining the default group permissions …
01:29 Changeset [6109] by carlos
merged trunk -r6044:6108

02/17/10:

19:09 Ticket #1806 (Search : implement fetchAlso logic) created by jmoore
Values can be passed in, but they aren't used anywhere. Alternative: …
18:47 Ticket #1805 (Importer : Handle Protocol exceptions with "possible version mismatch ...) created by jmoore
See #1803 for details
18:46 Ticket #1804 (Web : Handle Protocol exceptions with "possible version mismatch error") created by jmoore
See #1803 for details.
18:45 Ticket #1803 (Insight : Handle Protocol exceptions with "possible version mismatch ...) created by jmoore
Ice exceptions aren't something that our client library can really handle, …
16:19 WorkPlan/Permissions edited by jburel
(diff)
15:49 WorkPlan/Permissions edited by jburel
(diff)
13:59 Ticket #1802 (Permissions : Indexer broken since doesn't log into proper group) created by jmoore
[…]
13:27 Changeset [6108] by jmoore
ticket:1801 - Fixing getThumbnailByLongestSideSet
13:10 WorkPlan/Permissions edited by jburel
(diff)
13:07 Ticket #1801 (Thumbnail / Rendering will need to be permissions-aware) created by jmoore
 shoola:ticket:1157 and ticket:1769 describe issues when admins or PIs try …
11:48 WorkPlan/FileRepositoriesAndOmeroFs edited by jburel
(diff)
11:30 WorkPlan/RoiStorage edited by jmoore
(diff)
11:29 WorkPlan/UpgradeLibraries edited by jmoore
(diff)
11:27 WorkPlan/Permissions edited by jmoore
(diff)
11:25 Ticket #1776 (Permissions : Prevent inappropriate permission changes in IObjects) closed by jmoore
fixed: r6107 removes a last "NYI" related to the previous comment. We may want to …
11:24 Changeset [6107] by jmoore
ticket:1776 - Removing NYI in IAdmin.handleGroupPermissions
11:23 WorkPlan/Permissions edited by jmoore
(diff)
11:15 Ticket #1778 (Permissions : Add addGroupOwners and removeGroupOwners) closed by jmoore
fixed: Methods in place and working.
11:15 Ticket #1781 (Permissions : Allow group owners to manage own group) closed by jmoore
fixed: We may need to add group-owner access to other special methods, but for …
11:08 Ticket #1769 (Permissions : Handle admin/PI viewing/annotating in private group) closed by jmoore
fixed: Closing this ticket since the functionality that we are shooting for is in …
10:52 Changeset [6106] by jmoore
ticket:1769 - Automatic re-use of rendering defs for admin …
10:52 Changeset [6105] by jmoore
ticket:1769 - Added ReadOnlyAdminGroupSecurityViolation
10:52 Changeset [6104] by jmoore
Removing log message
10:51 Changeset [6103] by jmoore
Adding .hg to .gitignore

02/16/10:

21:57 WorkPlan/Permissions edited by jburel
(diff)
17:26 Ticket #1800 (OMERO.tables failing on string column saves.) created by bwzloranger
OMERO.tables is generating a server side error message while trying to …
17:13 Changeset [6102] by will
Added 'HOME' environment variable to scripting service.
16:58 uploadMask.py attached to WorkPlan/AlternativeStorageMongoDB by dzmacdonald
16:58 TagTable.py attached to WorkPlan/AlternativeStorageMongoDB by dzmacdonald
16:57 OmeroPopo.py attached to WorkPlan/AlternativeStorageMongoDB by dzmacdonald
16:52 WorkPlan/AlternativeStorageMongoDB edited by dzmacdonald
(diff)
16:37 AlternativeStorage.pptx attached to WorkPlan/AlternativeStorageMongoDB by dzmacdonald
16:37 WorkPlan/AlternativeStorageMongoDB created by dzmacdonald
16:31 WorkPlan/RoiStorage edited by dzmacdonald
(diff)
16:31 WorkPlan/RoiStorage edited by dzmacdonald
(diff)
13:55 Changeset [6101] by ola
missed variable in r6100
13:54 Changeset [6100] by ola
OMERO.web: #1456 - missed links #1684 - data loader
13:43 WorkPlan/HCSData edited by atarkowska
(diff)
13:43 WorkPlan/HCSData edited by atarkowska
(diff)
13:42 WorkPlan/OmeroWebUI edited by atarkowska
(diff)
13:35 WorkPlan/Permissions edited by atarkowska
(diff)
13:34 WorkPlan/Permissions edited by atarkowska
(diff)
13:27 Changeset [6099] by will
Script makes new images from ROI regions of a parent image.
13:26 Changeset [6098] by will
Script deletes old ROIs, adds colour etc.
12:15 Changeset [6097] by ola
OMERO.web: - #1456 annotation forms, fixed
11:26 Ticket #1754 (Make thumbnails available for a directory's files.) closed by cblackburn
fixed: This limited implementation uses BF to get and cache fixed-size thumbnails …
11:02 WorkPlan/FileRepositoriesAndOmeroFs edited by cblackburn
(diff)
11:01 WorkPlan/FileRepositoriesAndOmeroFs edited by cblackburn
(diff)
10:58 Ticket #1799 (Pass back relevant files as Image objects) created by cblackburn
A registered image when returned should probably included the pixels …
09:59 WorkPlan/Permissions edited by jburel
(diff)
09:49 WorkPlan/Permissions edited by jburel
(diff)
09:21 WorkPlan/Permissions edited by jburel
(diff)

02/15/10:

17:01 Changeset [6096] by carlos
omeroweb.extlib: temporarily commenting out listAnnotations, which is …
17:00 Changeset [6095] by carlos
python gateway: adding wrapper for setDescription
16:58 Changeset [6094] by jmoore
ticket:1791 - Adding support for WORLD-use of "user" group Note: also …
16:58 Changeset [6093] by jmoore
ticket:1434 - minor test fix
16:58 Changeset [6092] by jmoore
ticket:1781 - Adding minor test
16:58 Changeset [6091] by jmoore
ticket:1434 - s/default/CHANGE_ME/ in adduser.py
16:17 Ticket #1798 (BUG: SecurityFilter doesn't seem to be applied to ...) created by jmoore
`IMetadata.loadAnnotations(Experimenter.class, userId, FileAnnotation?, …
10:23 Changeset [6090] by ola
OMERO.web #1456: - missed content for r6087
10:05 Changeset [6089] by ola
adding new 'ui component' 1.7
10:04 Changeset [6088] by ola
deleting 'ui component'
09:59 Changeset [6087] by ola
more update for r6085
09:57 Changeset [6086] by will
Initial commit of scripts for adding EMAN2 functionality to OMERO
09:56 WorkPlan/FigureExport edited by jburel
(diff)
09:55 Changeset [6085] by ola
OMERO.web #1456: - WebAdmin? allows to manipulate permissions, ready to …
09:24 Changeset [6084] by will
Added "MergedNames?" script parameter
03:51 Changeset [6083] by carlos
python gateway support for rendering thumbnails for specific sections.

02/13/10:

08:47 WorkPlan/Permissions edited by jburel
(diff)
08:41 WorkPlan/FileRepositoriesAndOmeroFs edited by jburel
(diff)

02/12/10:

19:57 Changeset [6082] by callan
Merged r6081 from Trunk
17:02 Changeset [6081] by callan
#1797 Added basic annotation capabilities * Added linkage capability for …
17:00 Ticket #1797 (Add ability to handle user specified annotations) created by cxallan
The importer should be able to handle user specified annotations, linking …
13:07 WorkPlan/FileRepositoriesAndOmeroFs edited by jburel
(diff)
12:38 Ticket #1795 (Ice.SyscallException: Too many open files) created by atarkowska
Connection died. […]
12:25 Ticket #1794 (Permissions : Define exceptions to standard group permissions (#1434)) created by jmoore
As a follow-up to #1434, an attempt should be made to outline the …
11:18 Ticket #1792 (Permissions : Linking restriction is too strict.) closed by jmoore
fixed: r6080
11:16 Changeset [6080] by jmoore
ticket:1792 - Adding call to isGraphCritical
11:16 Ticket #1793 (Owner doesn't see members data in a private group) created by atarkowska
Owner doesn't see members data in a private group. […]
11:14 Ticket #1792 (Permissions : Linking restriction is too strict.) created by jmoore
The check for graph critical is missing: […]
10:23 Ticket #1791 (Permissions : User photos broken) created by jmoore
Similar to #1784 in which scripting was broken since scripts were only in …
08:29 Changeset [6079] by jmoore
 shoola:ticket:1154 - Compile error fix and refactoring.

02/11/10:

18:38 WorkPlan/FigureExport edited by jburel
(diff)
18:22 Changeset [6078] by carlos
Fixing small bug were revertGroupForSession was accessing removed …
17:38 WorkPlan/FileRepositoriesAndOmeroFs edited by cblackburn
(diff)
17:36 Changeset [6077] by cblackburn
Provide paths to jpg thumbnails of repository images, with basic caching.
16:46 WorkPlan/FigureExport edited by jburel
(diff)
16:34 AlternativeStorage edited by dzmacdonald
(diff)
16:32 Changeset [6076] by carlos
merging trunk -r6038:6044
16:30 AlternativeStorage edited by dzmacdonald
(diff)
16:23 AlternativeStorage edited by dzmacdonald
(diff)
16:22 AlternativeStorage edited by dzmacdonald
(diff)
16:19 AlternativeStorage edited by dzmacdonald
(diff)
16:16 AlternativeStorage edited by dzmacdonald
(diff)
15:46 AlternativeStorage edited by dzmacdonald
(diff)
15:44 WorkPlan/FigureExport edited by jburel
(diff)
15:37 AlternativeStorage edited by dzmacdonald
(diff)
15:35 AlternativeStorage edited by dzmacdonald
(diff)
13:50 AlternativeStorage edited by dzmacdonald
(diff)
13:45 Changeset [6075] by jmoore
 shoola:ticket:1154 - Missing patch to createExperimenterWithPassword
13:41 AlternativeStorage edited by dzmacdonald
(diff)
13:39 Ticket #1790 (Issues with cleanse.py on Windows) created by cxallan
Details on forum post: …
13:35 WorkPlan/FigureExport edited by jburel
(diff)
13:27 WorkPlan/FigureExport edited by jburel
(diff)
13:12 WorkPlan/FigureExport edited by jburel
(diff)
11:59 AlternativeStorage edited by dzmacdonald
(diff)
11:58 AlternativeStorage edited by dzmacdonald
(diff)
11:55 AlternativeStorage edited by dzmacdonald
(diff)
11:52 AlternativeStorage edited by dzmacdonald
(diff)
11:40 WorkPlan/RoiStorage edited by dzmacdonald
(diff)
11:38 AlternativeStorage edited by dzmacdonald
(diff)
11:38 AlternativeStorage edited by dzmacdonald
(diff)
11:36 AlternativeStorage edited by dzmacdonald
(diff)
11:14 AlternativeStorage edited by dzmacdonald
(diff)
11:01 AlternativeStorage edited by dzmacdonald
(diff)
10:51 AlternativeStorage edited by dzmacdonald
(diff)
10:36 AlternativeStorage created by dzmacdonald
09:52 Ticket #1789 (Logout critical error) created by atarkowska
When log out: […]
09:46 Ticket #1788 (ZeroDivisionError: float division) created by atarkowska
[…]
09:45 Ticket #1787 (BUG:Min: 0.0 Max: -1.0 Interval not supported) created by atarkowska
[…]
09:44 Ticket #1786 (Website: OME About pages and others) created by jburel
Action following 09/02/10 meeting Update the OME team page on …
09:41 Ticket #1785 (FAQ and mailing list) created by jburel
Action following 09/02/10 meeting review FAQ and update from …
09:33 Changeset [6074] by jmoore
ticket:1784 - Modifying SecurityFilter? and SystemTypes? to allow 'system' …
09:33 Changeset [6073] by jmoore
ticket:1784 - Removing manual permission set from ScriptI
08:56 WorkPlan/FileRepositoriesAndOmeroFs edited by cblackburn
(diff)
08:53 Ticket #1752 (Repository should return OriginalFile objects.) closed by cblackburn
fixed: listKnown methods implemented.
07:59 Changeset [6072] by jmoore
ticket:1769 - Assuming ticket:1698 won't apply if not setting LOCK
07:59 Changeset [6071] by jmoore
ticket:1769 - First attempted using currentState to workaround ticket:1698
07:59 Changeset [6070] by jmoore
ticket:1769 - Loosened restrictions on INSERT/UPDATE/DELETE in private …

02/10/10:

23:03 WorkPlan/ElectronMicroscopy edited by jburel
(diff)
22:15 Changeset [6069] by jburel
added method to set file.
22:12 WorkPlan/FigureExport edited by jburel
(diff)
21:39 WorkPlan/FigureExport edited by jburel
(diff)
21:37 WorkPlan/FigureExport edited by jburel
(diff)
21:34 WorkPlan/FigureExport edited by jburel
(diff)
20:48 WorkPlan/FileRepositoriesAndOmeroFs edited by jburel
(diff)
19:07 WorkPlan/FileRepositoriesAndOmeroFs edited by jburel
(diff)
18:12 WorkPlan/FileRepositoriesAndOmeroFs edited by jburel
(diff)
17:24 Ticket #1784 (Permissions : problems with Scripting service) created by wmoore
Scripts are an interesting problem for #1434. They are one of the few (the …
13:56 Changeset [6068] by jmoore
Revert "ticket:1783 - Initially making all groups on db creation rw----" …
12:19 Changeset [6067] by jmoore
OmeroBuild : Adding call to growlnotify to build.py
12:19 Changeset [6066] by jmoore
ticket:1781 - Fixing issues with exp/grp update (API CHANGE''') For …
12:19 Changeset [6065] by jmoore
ticket:1781 - Fixing a few bugs, adding tests
12:19 Changeset [6064] by jmoore
ticket:1783 - Initially making all groups on db creation rw----
11:17 WorkPlan/Permissions edited by jmoore
(diff)
11:12 WorkPlan/Permissions edited by jburel
(diff)
11:03 WorkPlan/Permissions edited by jmoore
(diff)
10:20 WorkPlan/Permissions edited by jmoore
(diff)
10:20 Ticket #1783 (Permissions : Sensible default permissions for initial groups) created by jmoore
This ticket is a part of #1434. Previously, all groups created via …
10:13 WorkPlan/Permissions edited by jmoore
(diff)
09:40 WorkPlan/ScriptingImprovements edited by jburel
(diff)

02/09/10:

20:01 Changeset [6063] by jburel
Fixed setter and getter for description
16:28 Changeset [6062] by jburel
Exposed description
16:23 Changeset [6061] by jmoore
ticket:1781 - Allow non-system group-owners to make some IAdmin calls …
13:32 Ticket #1782 (Permissions : Unify names for methods) created by jmoore
This ticket is a part of #1434 In r6060 internal LocalAdmin methods …
11:24 Changeset [6060] by jmoore
ticket:1778 - adding getLeader/MemberOfGroups to IAdmin
11:24 Changeset [6059] by jmoore
ticket:1778 - Fixing missing arguments in AdminI.java
11:24 Changeset [6058] by jmoore
ticket:1776 - Adding check for identical permissions in group filter in …
11:24 Changeset [6057] by jmoore
ticket:1778 - Adding add/removeGroupOwners (Also workaround for #1779)
11:15 WorkPlan/Permissions edited by jburel
(diff)
11:14 WorkPlan/Permissions edited by jburel
(diff)
11:10 WorkPlan/Permissions edited by jburel
(diff)
11:06 WorkPlan/TaskAllocation edited by jmoore
#1781 (diff)
11:05 WorkPlan/Permissions edited by jmoore
(diff)
11:05 Ticket #1781 (Permissions : Allow group owners to manage own group) created by jmoore
This ticket is a part of #1434 Group owners should have special …
10:35 Ticket #1780 (Add server up/down notifier interface) created by jmoore
A jabber,email,etc. notifier could be useful for warning users that the …
09:46 Ticket #1779 (BUG : permissions of non-group system types is influenced by current group) created by jmoore
This ticket is a part of #1434. Instead of using the current group's for …
07:55 WorkPlan/TaskAllocation edited by jmoore
#1778 (diff)
07:55 WorkPlan/Permissions edited by jmoore
#1778 (diff)
07:54 Ticket #1778 (Permissions : Add addGroupOwners and removeGroupOwners) created by jmoore
This ticket is a part of #1434 Like setGroupOwner and unsetGroupOwner, …
07:51 Changeset [6056] by jmoore
ticket:1776 - Adding call to changePermissions to IAdmin.updateGroup
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