Timeline


and .

09/17/09:

18:02 Changeset [5003] by jmoore
Fixing multiple returned measurements
17:05 Changeset [5002] by donald
added doc.
17:01 Changeset [5001] by donald
fixed omero.clients, upload plugin.
16:43 Changeset [5000] by donald
Removed some unused imports.
16:10 Changeset [4999] by donald
helper utilities for OriginalFiles?.
15:25 Changeset [4998] by andrew
Fixing typo in epydoc CSS filename.
15:13 Changeset [4997] by callan
Updating to  bio-formats:r5474
14:06 RegionsOfInterest created by jmoore
13:44 Changeset [4996] by jmoore
Fixing HQL generation issue
13:42 Changeset [4995] by brain
Permissions AdminTest? fix
13:29 Changeset [4994] by callan
Support for Flex file parsing, and abstract datatyping for measurement and …
11:53 Changeset [4993] by jmoore
Bug fixing in RoiService?
10:59 Changeset [4992] by brain
Permissions AdminTest? added
09:02 Changeset [4991] by jmoore
Renaming method to getRoiMeasurements()
08:49 OmeroTables edited by jmoore
(diff)
08:43 OmeroTables edited by jmoore
(diff)
08:39 MeasurementListSep09.png attached to OmeroTables by jmoore
Choice between multiple measurements
08:30 OmeroTables edited by jmoore
(diff)
08:04 MeasurementToolSep09.png attached to OmeroTables by jmoore
Prototype of table results in Insight

09/16/09:

21:29 Changeset [4990] by brain
temp removal for tests for compile
18:39 Changeset [4989] by jmoore
Fixing ClassCastException
18:13 Changeset [4988] by callan
Factory driven analysis contexts (precursor to Flex and InCell? parsers).
14:36 Changeset [4987] by cblackburn
Changes to facilitate directory-based import. MacOs? X only support in this …
14:31 Changeset [4986] by cblackburn
Initial set of OmeroFS config properties.
13:48 Changeset [4985] by jmoore
Fixing OOM in background pg_geom logic
13:32 Changeset [4984] by brain
second pass at permissions tests
10:19 Changeset [4983] by jmoore
ticket:1391 : Another attempt to fix the weird error
10:19 Changeset [4982] by jmoore
Lowering log level
10:19 Changeset [4981] by jmoore
OmeroTables : Adding inner join to rois on IRoi.getImageMeasurements()
09:12 Changeset [4980] by ola
OMERO.web - notification for share fixed - display screens and plates
09:08 Changeset [4979] by jmoore
RegionsOfInterest : Enabling background pg_geom parsing

09/15/09:

17:02 Changeset [4978] by andrew
Adding OME style to epydocs
15:39 Changeset [4977] by andrew
Adding OME styling to the generated Javadocs and fixing most of the …
15:09 Changeset [4976] by callan
Updated populate ROI: * Fixed imports (some hacks here) * Added code for …
14:07 Changeset [4975] by brain
initial sec test commit
13:08 Changeset [4974] by andrew
Adding an extra <div> to use for spacing.
09:51 Ticket #1475 (OmeroPy threads should not be called "dummy") created by jmoore
For some reason, Ice initializes the thread pool under Python to "dummy-".
09:42 Changeset [4973] by callan
Updating to  bio-formats:r5469
09:36 Changeset [4972] by jmoore
OmeroPy : Adding xmlrunner for better test visualization
09:36 Changeset [4971] by jmoore
OmeroTables : Adding close and guaranteeing single cleanup
08:54 Ticket #1474 (All internal components should share a single session) created by jmoore
Rather than the Registry.getInternalServiceFactory() (OmeroJava) and …

09/14/09:

22:28 Changeset [4970] by ola
OMERO.web - group permissions available in the admin panel
20:42 Changeset [4969] by jmoore
OmeroPy : Attempted fix for further import issues
20:05 Changeset [4968] by jmoore
OmeroTables : Fixing return value of slice
20:02 Changeset [4967] by jmoore
OmeroTables : Passing all values when slice is empty or None
19:49 Changeset [4966] by jmoore
OmeroTables : Fixing initialization error
19:16 Ticket #1473 (Script and install) created by jburel
Available script e.g. movie should be inserted in DB when installing or …
19:01 Changeset [4965] by jmoore
OmeroPy : Adding sys to runProcessor.py
19:01 Changeset [4964] by jmoore
UpdateService? : Making internal saveAndReturnIds public.
17:30 Changeset [4963] by callan
Updating to  bio-formats:r5468
17:26 Changeset [4962] by jburel
Added new method
15:52 Changeset [4961] by andrew
Adding new build target release-docs that depends on other doc targets so …
14:34 Changeset [4960] by andrew
Changes to the html behind some docs.
14:34 Changeset [4959] by callan
Updating to  bio-formats:r5466
14:32 Changeset [4958] by callan
* Flex reader server maps are now tokenized on ";" * Added "--debug" to …
14:01 Changeset [4957] by callan
Fix OmeroImporter Eclipse classpath (commons-io).
13:58 Changeset [4956] by jmoore
RegionsOfInterest : Implementing getMeasuredRoisMap
12:17 Changeset [4955] by donald
updated.
12:15 Changeset [4954] by donald
update pydoc and fixed some drawing.
12:13 Changeset [4953] by jmoore
ImportCandidates? : Fixing silly non-dir issue
12:00 Changeset [4952] by donald
Pydoc added.
11:38 Changeset [4951] by jmoore
OmeroExport? : Fixing simple implementation
10:26 Changeset [4950] by donald
added scripts directory to build in OmeroPy.
09:10 Changeset [4949] by callan
Updating to  bio-formats:r5465 * Removed some display option methods …

09/11/09:

23:19 Changeset [4948] by jmoore
ImportCandidates? : Fixing io issues, logging, and exception handling.
23:17 Ticket #1472 (CommandLineImporter should upload feedback) created by jmoore
while testing the directory import, lots of issues appeared. having flag …
20:58 Changeset [4947] by jmoore
ImportCandidates? : Improved version which actually imports and takes …
20:21 Ticket #1471 (Add callback to internal_service_factory to check for cancellation) created by jmoore
If blitz does not start, the tables server waits until all 5-6 tries of …
16:47 Changeset [4946] by callan
Initial version of populate ROI script for MIAS.
16:06 Changeset [4945] by jmoore
OmeroTables : Moving to runX.py scripts rather than -m (r4856)
16:06 Changeset [4944] by jmoore
ImportCandidates? : python method for parsing out contents of a directory.
15:35 Ticket #1470 (Gateway error) closed by atarkowska
fixed: r4943
15:34 Changeset [4943] by ola
#1470
14:57 Changeset [4942] by donald
adding doc
14:03 Changeset [4941] by andrew
First try at style for the OMERO API docs
13:16 Changeset [4940] by ola
reset Enums updated
13:16 Changeset [4939] by ola
OMERO.web - enums updated
13:15 Ticket #1470 (Gateway error) created by atarkowska
[…]
11:37 Changeset [4938] by jburel
Added new space
11:11 Changeset [4937] by jmoore
OmeroTables : fixing use of functools on 2.4
11:11 Changeset [4936] by jmoore
OmeroCpp : Fixed omero::cast (Thanks, Bernhard)
08:54 Changeset [4935] by cblackburn
Initial changes to facilitate specialised monitor subclasses.

09/10/09:

21:20 Changeset [4934] by donald
added visitor as Interface, fixed polyline.
21:03 Changeset [4933] by donald
Fixed some bugs.
17:11 Changeset [4932] by donald
added AffineTransforms? to ROI.
16:49 Changeset [4931] by donald
added Drawing methods for polygon/polyline
16:40 Changeset [4930] by donald
fixed, added methods to create ROIData elements from ROII elements
16:19 Changeset [4929] by brain
Update of bio-foramts to r5452, test_engine changes -> test reults now …
15:57 Changeset [4928] by jmoore
OmeroCpp : Fixed omero::cast. Thanks, Bernhard
15:09 OmeroTables edited by jmoore
(diff)
15:06 Changeset [4927] by jmoore
OmeroTables : Implementation and example of "measured RegionsOfInterest" …
14:24 Changeset [4926] by donald
added methods for getting properties from shapesettings tuple.
14:19 Changeset [4925] by donald
added ROI Drawing Class and updated ROIDataElements to be more useful.
12:31 Changeset [4924] by andrew
API docs header that generates better HTML and the title in the right …
12:13 Changeset [4923] by jmoore
OmeroTables : Fixing Table.getOriginalFile()
11:59 Changeset [4922] by donald
updated ROI utils to be more selfcontained.
11:55 Changeset [4921] by jmoore
OmeroTables : Adding measurement-based methods Measurements are currently …
11:49 OmeroTables edited by jmoore
(diff)
11:07 StructuredAnnotations edited by jmoore
(diff)
10:51 Changeset [4920] by andrew
Another change to add extra div tag that should work.
10:51 Changeset [4919] by jmoore
Fixing test
09:42 Ticket #1463 (slice2html segfaults on OS X 10.5) closed by jmoore
fixed: r4916 should keep the build running now. slice2html is only called from …
09:36 Changeset [4918] by jmoore
OmeroTables : Added slice() method
09:36 Changeset [4917] by jmoore
OmeroApi : Improving OmeroBlitz docs (also: ticket:1463) * Moved …
09:36 Changeset [4916] by jmoore
OmeroBuild : Moving slice2html generation to top-level (ticket:1463)
09:06 Ticket #1469 (Generated docs (slice2html, javadoc, ...) improvements) created by jmoore
* Move all ome.api.* javadoc comments to API.ice * (Also separate out the …

09/09/09:

23:14 Changeset [4915] by andrew
Second try at adding div tags.
21:47 Changeset [4914] by andrew
Undo some of the changes to fix build.
21:27 Changeset [4913] by andrew
Adding some div tags to the header file and a dummy style sheet so I can …
20:45 Changeset [4912] by jmoore
OmeroApi : Attempt improvement of generated slice documentation
20:22 OmeroTables edited by jmoore
(diff)
20:22 OmeroTables edited by jmoore
(diff)
20:15 ExtendingOmero edited by jmoore
(diff)
19:21 Changeset [4911] by jmoore
Fixing the ServiceFactory constructors again
18:44 Ticket #1439 (Respect JAVA_OPTS from java.py regardless of other xargs) closed by jmoore
fixed: r4904
18:43 Ticket #1392 (Add underscore files to modules for dot notation) closed by jmoore
fixed: r4898. Bernhard gets his wish. :)
18:42 Changeset [4910] by jmoore
OmeroGrid : Enabling filters
18:42 Changeset [4909] by jmoore
OmeroTables : Fixing example
18:42 Changeset [4908] by jmoore
OmeroGrid : Fixing Windows descriptor
16:27 Changeset [4907] by jmoore
OmeroGrid : Adding missing forward definitions
16:15 Changeset [4906] by jmoore
OmeroCli : Another KeyboardInterrupt fix.
16:15 Changeset [4905] by jmoore
OmeroTables : First working version * Fixed proxy lookup via AMI * …
16:15 Changeset [4904] by jmoore
ticket:1439 - improving JAVA_OPTS support
16:15 Changeset [4903] by jmoore
OmeroGrid : Attempted fix at shared resources lookup without timeouts.
16:15 Changeset [4902] by jmoore
OmeroPy : Better exception handling in OmeroGrid base classes
16:15 Changeset [4901] by jmoore
OmeroExamples : Adding try/finally blocks in configuration.java to prevent …
16:15 Changeset [4900] by jmoore
OmeroPy : More import cleanups
16:15 Changeset [4899] by jmoore
ticket:1463 - More slice cleanups
16:15 Changeset [4898] by jmoore
OmeroPy : Large scale import changes for Python via omero/clients.py
16:15 Changeset [4897] by jmoore
OmeroCli : Catching KeyboardInterrupt during import
16:15 Changeset [4896] by jmoore
Removing debugging log.error statements
16:15 Changeset [4895] by jmoore
OmeroGrid : Moving from templates to <include/>
16:15 Changeset [4894] by jmoore
OmeroGrid : Error handling of registry lookups and other minor fixes
16:15 Changeset [4893] by jmoore
Adding jul-to-slf4j bridge to .classpath
16:15 Changeset [4892] by jmoore
ObjectModel : Removing <rules/> elements in preparation for XSD code gen
16:15 Changeset [4891] by jmoore
OMERO4-DEV__5 : Fixing seq_format from OMERO4__0.sql upgrade
14:29 Ticket #1468 (enableKeepAlive for OmeroCpp) created by jmoore
Follow on to #1409
12:11 Changeset [4890] by callan
Disabled ROI and Ellipse population for now.
10:35 Changeset [4889] by jburel
changed the visibility of a method
10:34 Ticket #1409 (Add omero.client internal keep alive support) closed by jmoore
fixed: r4603 includes client.enableKeepAlive() for OmeroJava and OmeroPy. A …
10:01 Ticket #1467 (Rendering of Channel Colours) created by wmoore
Need to consider emission filters when choosing channel colours, when …
09:39 Changeset [4888] by callan
Updating to  bio-formats:r5449

09/08/09:

20:50 OmeroTables edited by jmoore
(diff)
18:36 OmeroTables edited by jmoore
(diff)
18:35 OmeroTables created by jmoore
17:56 Ticket #1466 (scons could read ICE_HOME from Windows Registry) created by jmoore
cF. …
16:36 Changeset [4887] by donald
updated, and fixed errors.
16:01 Changeset [4886] by donald
created new ROI methods for python, similar to Pojos
14:58 Changeset [4885] by callan
Woops, missed commit of server side ROI handling logic changes.
14:53 Changeset [4884] by ola
update for r4883
14:45 Changeset [4883] by ola
update for r4879
14:39 Changeset [4882] by callan
* More efficient companion file upload. * 256MB --> 512MB heap size for …
14:20 Ticket #1465 (Remove register-process from OmeroGrid configuration (Ice::Process)) created by jmoore
35.16 XML Reference […]
14:17 Ticket #1464 (Handle Singal.BREAK on Windows) created by jmoore
See ZeroC manual: 35.21.2 Server Deactivation
14:05 Changeset [4881] by ola
update for r4880, removing unused libraries
14:02 Changeset [4880] by ola
#1436
13:59 Changeset [4879] by ola
OMERO.web - enumeration in WebAdmin?, done
13:16 Changeset [4878] by callan
* Limited ROI handling based on calls made by MIASReader * Metadata …
11:01 Changeset [4877] by callan
Usage of wrong index.
10:53 Changeset [4876] by callan
Ensure we don't have potentially game breaking cyclical links in the …
10:45 Changeset [4875] by donald
Updated mask object to work with bytes.
08:04 Changeset [4874] by jmoore
ticket:1463 - Adding Format to ModelF.ice
07:47 Changeset [4873] by jmoore
OmeroTables : fixing test 'compile' issues and failing on missing libs
07:47 Changeset [4872] by jmoore
ticket:1463 - Initial slice includes cleanup
07:47 Changeset [4871] by jmoore
OMERO4-DEV__5 : Enumeration fixes * Added Formats MIAS, …
07:45 Ticket #1463 (slice2html segfaults on OS X 10.5) created by jmoore
cF. …
07:43 Ticket #1462 (DB Upgrade scripts should add an Event (and possibly EventLogs)) created by jmoore
To track what happened when a dbpatch was applied, an Event would be …
07:21 Ticket #1461 (Find a workaround for restricted sc.exe usage on Vista) created by jmoore
On Vista, sc.exe requires admin account and reduced/disabled security …

09/07/09:

17:50 Ticket #1460 (Rendering Alpha for non-RGBA images) created by wmoore
Importing a couple of Leica - LIF files (eg. skyking LIF/chris/free …
16:26 Changeset [4870] by callan
* Fixed issues where companion files would be uploaded more than once, …
15:36 Changeset [4869] by jmoore
RegionsOfInterest : Adding byte[] column to Masks
15:21 Changeset [4868] by ola
update for r4867 to many "/" in the link
15:13 Changeset [4867] by ola
logger update
15:11 Changeset [4866] by ola
update for r4770
14:00 Ticket #1459 (Could not insert but log in is successful) created by atarkowska
First time when I log in as user authenticated by ldap, that error …
13:58 Changeset [4865] by donald
added error checking
13:53 Changeset [4864] by donald
added new pojo types for polygon, polyline and mask.
12:11 Changeset [4863] by jmoore
Fixing Processor templates for Windows
11:14 Ticket #1457 (Hudson doesn't have a pre-checkout hook) created by jmoore
This is why we have a omero-windows-prep job before ...-integration. …
10:36 Changeset [4862] by jmoore
OmeroTables : Making pytables and numpy imports optional. Needs work
10:15 Ticket #1456 (View others people data in OMERO.web) created by atarkowska
ticket related to #1434
10:10 Ticket #1455 (Export image) created by atarkowska
As a user I would like to export image from OMERO.web Related tickets: …
10:09 Changeset [4861] by jmoore
Fixing tests
10:08 Ticket #1363 (Properly implement LSID support in server) closed by jmoore
fixed: r4824 - All databases are now created with a UUID for identifing the DB as …
10:07 Ticket #1450 (Shutdown exception in python) closed by jmoore
fixed: r4851 Various attempts to fix this (sporadic) bug, didn't work. This one …
10:07 Ticket #1454 (Send message to users) created by atarkowska
As an admin I would like to send a message to every users/users from …
09:28 Changeset [4860] by jmoore
Adding missing method
09:28 Changeset [4859] by jmoore
OMERO4-DEV__5 : Added PixelsType? enum "bit"
09:28 Changeset [4858] by jmoore
Attempt to fix Indexer server
09:28 Changeset [4857] by jmoore
OmeroTables : More tests. Needs work on acquisition
09:28 Changeset [4856] by jmoore
OmeroGrid : Using python -m omero.tables for launching Executing …
09:28 Changeset [4855] by jmoore
OMERO4-DEV__5 and upgrade scripts in preparation for OMERO4.1__0
09:28 Changeset [4854] by jmoore
ticket:1400 - "FAILED" is also not completely portable.
09:28 Changeset [4853] by jmoore
OmeroTables : Refactoring tables.py for better locking and exception …
09:28 Changeset [4852] by jmoore
OmeroGrid : Renaming GridServices to SharedResources
09:28 Changeset [4851] by jmoore
OmeroTables : columns.py (like rtypes.py) and a fix for ticket:1450
09:28 Changeset [4850] by jmoore
RegionsOfInterest : Adding x,y coordinates to text shape
09:28 Changeset [4849] by jmoore
OmeroPy : Adding IPython to the OmeroPy/src
09:28 Changeset [4848] by jmoore
OmeroTables : Intermediate commit with partial LegacyRepository? support …
09:28 Changeset [4847] by jmoore
OmeroTables : refactored initialization and testing
09:28 Changeset [4846] by jmoore
Better exception handling in Registry.getInternalServiceFactory()
09:28 Changeset [4845] by jmoore
Minor fixes to OmeroPy's internal_service_factory()
09:28 Changeset [4844] by jmoore
MeasurementStore? : OMERO implementation of upcoming bioformats API The …
09:28 Changeset [4843] by jmoore
OmeroConfig? : Adding getDatabaseUuid() for OmeroExport?
09:28 Changeset [4842] by jmoore
OmeroWindows? : QUICKSTART.bat tested on Windows Server 2003, 64bit
09:28 Changeset [4841] by jmoore
OmeroMatlab : Stopping timers on unloadOmero
09:28 Changeset [4840] by jmoore
ticket:1400 - Improvement for non-win32-api case
09:28 Changeset [4839] by jmoore
OmeroGrid : Added GridServices? and worked on OmeroTables backend
09:28 Changeset [4838] by jmoore
OmeroPy : Refactoring getOmeroServiceFactory() to omero.util
09:28 Changeset [4837] by jmoore
OmeroTables : API and work on backend
09:28 Changeset [4836] by jmoore
OmeroTables : More work, mostly on the HDF backend and the API
09:28 Changeset [4835] by jmoore
Adding portalocker.py from cookbook
09:28 Changeset [4834] by jmoore
OmeroBlitz : Injecting TopicManager? and Registry
09:28 Changeset [4833] by jmoore
OmeroTables : Initial work on tables API
09:28 Changeset [4832] by jmoore
OMERO4-DEV__5 improvements to LSID generation for OmeroExport?
09:28 Changeset [4831] by jmoore
OmeroRepositories? : Initial work on distributed repositories
09:28 Changeset [4830] by jmoore
OmeroExport? : Adding missing methods to OmeroMetadata
09:28 Changeset [4829] by jmoore
OmeroExport? : Working on in-session example
09:28 Changeset [4828] by jmoore
OmeroExport? : Disabling actual export, waiting on code-gen
09:28 Changeset [4827] by jmoore
OmeroExport? : (temporary) commit of the code generated OmeroMetadata
09:28 Changeset [4826] by jmoore
OmeroExport? : Improved export functionality with generated OmeroMetadata
09:28 Changeset [4825] by jmoore
OmeroExport? : Work on ExporterI pre-code generation
09:28 Changeset [4824] by jmoore
OmeroExport? : Upgrade to OMERO4-DEV__5 for supporting LSIDs * #1363
09:28 Changeset [4823] by jmoore
OmeroExport? : Working export.py plugin, but OmeroCli needs refactoring
09:28 Changeset [4822] by jmoore
OmeroExport? : Working Exporter.getBytes()
09:28 Changeset [4821] by jmoore
OmeroExport? : Moving toward a working service
09:28 Changeset [4820] by jmoore
OmeroExport? : Initial work with a simple interface
09:28 Changeset [4819] by jmoore
Whitespace fixes

09/04/09:

13:40 Changeset [4818] by callan
Companion text file with a metadata dump. (#1453)
11:30 Changeset [4817] by callan
Fixing appender.
11:30 Changeset [4816] by brain
small fix for userspecifiedimageName call
11:03 Changeset [4815] by callan
Fix original file format usage.
10:36 Changeset [4814] by jburel
Added support for settings
07:01 Ticket #1427 (Add wildcard specification on the used-files list.) closed by cblackburn
fixed: An empty list of extensions will report on all files.
06:44 Changeset [4813] by cblackburn
Fix to Windows import. Handle file locks.

09/03/09:

22:37 Ticket #1453 (Metadata) created by jburel
Following Wednesday meeting 02/09: Create a companion file (txt …
22:34 Ticket #1452 (EM file formats) created by jburel
Following Wednesday 02/09: Turn on some supported EM file formats
16:51 Changeset [4812] by brain
added a help menu item to assist users in finding their log file directory
16:37 Changeset [4811] by callan
Initial solution for #1451
16:37 Ticket #1451 (Logging infrastructure re-organization) created by cxallan
New features: * Command line log4j properties * metadata-validator log4j …
14:49 Changeset [4810] by donald
update the ROIData objects.
14:48 Ticket #1450 (Shutdown exception in python) created by jmoore
Seen at the end of a unit test: […]
11:03 OmeroCpp edited by jmoore
(diff)
09:09 Changeset [4809] by callan
Updating to  bio-formats:r5433

09/02/09:

18:07 Changeset [4808] by jburel
added new methods to access protocol, reagent etc.
18:03 Changeset [4807] by callan
Per-series archive logic based on getSeriesUsedFiles() from …
16:35 Changeset [4806] by jburel
Added files to support server ROI
15:57 Changeset [4805] by callan
Fix test cases where the reference comparison can be of multiple types and …
11:31 Ticket #1449 (Windows logging fixes) created by jmoore
See: …

09/01/09:

22:31 Changeset [4804] by callan
Updating to  bio-formats:r5430
16:33 Changeset [4803] by callan
Javadoc.
16:32 Changeset [4802] by callan
Ditto for logical channels.
16:15 Changeset [4801] by callan
All references don't necessarily have to be filled.
16:07 Changeset [4800] by callan
Reference test cases for: * LogicalChannel? --> FilterSet? * FilterSet? --> …
15:57 OmeroCpp edited by jmoore
(diff)
15:17 Changeset [4799] by donald
added test for getPlaneStack.m
15:12 Changeset [4798] by callan
Added the capability to read Flex reader server maps from the importer.ini …
14:54 Changeset [4797] by donald
updated to map float in pixelsType to single in Matlab.
14:12 Changeset [4796] by callan
Updating to  bio-formats:r5426
14:10 Changeset [4795] by callan
Removing eroneous debug output.
13:16 Changeset [4794] by callan
Updated metadata-validator to take more arguments from Hudson.
12:02 Changeset [4793] by jmoore
Attempt to fix odd integration.active.xml parsing issue
11:17 OmeroCpp edited by jmoore
(diff)
11:15 OmeroCpp edited by jmoore
(diff)
10:31 Changeset [4792] by jmoore
Removing topicmanager and registry arguments
09:54 Changeset [4791] by jmoore
RegionsOfInterest: Adding ownerId & groupId to RoiOptions

08/31/09:

20:55 Ticket #1448 (Companion file creation) created by jburel
Create a companion file i.e. text file with all the metadata read by BF …
19:13 OmeroCpp edited by jmoore
(diff)
19:04 OmeroCpp edited by jmoore
(diff)
18:44 yourcode.cpp attached to OmeroCpp by jmoore
Example source code
18:44 Makefile attached to OmeroCpp by jmoore
Example Makefile
18:43 Changeset [4790] by jmoore
OmeroCpp : Removing hard-coded paths. Now ICE_HOME based
18:42 OmeroCpp edited by jmoore
(diff)
13:48 Ticket #1447 (OMX images) created by jburel
Version Beta4.0.4 Record 2954 I imported a panel of …
13:43 Changeset [4789] by callan
New Bio-Formats JAR updater that also does Subversion and other repository …
13:42 Changeset [4788] by callan
Updating to  bio-formats:r5420
10:27 Changeset [4787] by brain
importer changes to allow unreadable files to be sent via feedback
09:53 Changeset [4786] by jmoore
OmeroMatlab : Fixing call to toMatrix

08/29/09:

10:26 Ticket #1446 (Import image's name) created by jburel
The specified name of the image is never taken into account i.e. imageName …

08/28/09:

17:34 Ticket #1445 (Remote DropBox) created by cblackburn
Create remote DropBox? functionality * Launch remote fsServer nodes * …
14:35 Changeset [4785] by donald
updated demo to use toMatrix.m method for data conversion.
14:30 Changeset [4784] by donald
added documentation
14:23 Ticket #1444 (Due to Java memory issues, pixel conversion may should happen in ...) closed by dzmacdonald
fixed: Fixed see commit [4783]
14:22 Changeset [4783] by donald
fix for ticket 1444
14:05 Changeset [4782] by cblackburn
Fixes for tickets #1427 and #1429
14:01 Ticket #1444 (Due to Java memory issues, pixel conversion may should happen in ...) created by jmoore
Currently the conversion of byte[] to an interpretable array happens in …
10:22 Changeset [4781] by brain
feeback improvements, history now works with screens, fix for buttons not …
10:18 Ticket #812 (Importer: Clear Failed) closed by bwzloranger
fixed
10:17 Ticket #1373 (Centralize the importer data repository) closed by bwzloranger
fixed
10:16 Ticket #1443 (New Feedback Mechanism for Importer) closed by bwzloranger
fixed
10:16 Ticket #1443 (New Feedback Mechanism for Importer) created by bwzloranger
Finish the new importer feedback system.
10:14 Ticket #1087 (Allow users to force an import abort (immediate cancel option)) closed by bwzloranger
fixed

08/27/09:

21:19 Ticket #1442 (Re-add the OmeroPy .egg file) created by jmoore
See: …
19:48 Ticket #1441 (Add configuration for Sun's LDAP implementation to handle connection leaks) created by jmoore
*  http://forum.springsource.org/showthread.php?t=27549 * …
15:33 Ticket #1400 (admin.py on Windows is not properly internationalized.) closed by jmoore
fixed: r4760 now uses the win32 API in python for checking whether or not the …
15:33 Ticket #1440 (Decide if win32 API in python is a requirement on Windows) created by jmoore
See #1400
15:28 Ticket #1439 (Respect JAVA_OPTS from java.py regardless of other xargs) created by jmoore
See: …
15:27 Ticket #1438 (Get rid of "sessionClosed" on stderr.) created by jmoore
Either configuring silent stdout/stderr should be trivial, or this should …
15:23 Ticket #1437 (Separate out integration tests (OmeroPy, etc.) into separate build) created by jmoore
So it's easier to see when a particular components (OmeroPy, OmeroCpp) is …
15:16 Changeset [4780] by jmoore
OmeroMatlab : Cleaning up helpers
14:46 OmeroClients edited by jmoore
(diff)
14:32 Changeset [4779] by jmoore
OmeroMatlab : TreeList? example
13:29 Changeset [4778] by jmoore
ticket:1436 - broken itypes
13:29 Changeset [4777] by jmoore
OmeroMatlab : More examples of ScreenPlateWell
13:29 Changeset [4776] by jmoore
OmeroMatlab : All OmeroClients examples in matlab and omero.rtypes helpers
12:13 Changeset [4775] by callan
Fixed close() implementation vis-a-vis  bio-formats:r5403

08/26/09:

16:42 Ticket #1436 (ITypes.getEnumerationTypes) created by jmoore
From Ola: […]
14:38 Changeset [4774] by brain
upped validator memory
12:20 Changeset [4773] by jmoore
OmeroMatlab : forgot one
12:09 Changeset [4772] by jmoore
OmeroMatlab : Clearing java instances to prevent warnings
12:01 Changeset [4771] by jmoore
OmeroMatlab : fix for loadOmero and more tests
10:26 Changeset [4770] by ola
update for r4769
10:21 Changeset [4769] by ola
webgateway links updated
09:36 Changeset [4768] by ola
not enough arguments for format string, fixed
08:37 Changeset [4767] by jmoore
OmeroMatlab : Various fixes * loadOmero now checks for existing version …

08/25/09:

21:35 Changeset [4766] by jmoore
OmeroMatlab : More test fixes
17:47 Changeset [4765] by callan
Byte array creation pixel type fix from Melissa
15:18 Changeset [4764] by brain
upped validator memory
14:10 Changeset [4763] by carlos
omeroweb.webgateway removing unneeded files, updating images and tweaking …
13:29 Changeset [4762] by callan
Updating to  bio-formats:r5415
12:48 Changeset [4761] by jmoore
OmeroMatlab : More fixes for testing on Windows
08:15 Changeset [4760] by jmoore
OmeroMatlab : Improvements to OmeroBuild and OmeroPy for testing on …

08/24/09:

11:51 Changeset [4759] by ola
update for r4758
11:48 Ticket #1435 (Active group is not changed) closed by atarkowska
fixed: r4758
11:47 Changeset [4758] by ola
OMERO.web - change active group fixed #1435 - #1196 - viewer layout …
11:46 Ticket #1435 (Active group is not changed) created by atarkowska
change_active_group does not update the connection. It happened because …
09:38 Ticket #1434 (Re-enable group permissions support) created by jmoore
This ticket is the story umbrella for all the permissions improvements …

08/21/09:

13:31 Changeset [4757] by ola
OMERO.web - viewer layout updated
13:17 Changeset [4756] by ola
update for r4755
12:55 Ticket #1433 (FS should provide a method getSupportEventTypes()) created by jmoore
Clients may need to switch from a notification to a polling system if a …
12:50 Ticket #1432 (FS module renaming) created by jmoore
FS should modules should at least be contained in module omero if not …
12:49 Ticket #1431 (Move FS exception definition(s) to omero/ServerErrors.ice) created by jmoore
OMERO.fs exceptions should be a part of the rest of the OMERO exception …
12:44 Ticket #1430 (FS ice files should move to blitz/resources/omero/fs.ice) created by jmoore
For any other service to be able to consume the FS interface, it will need …
12:23 Changeset [4755] by ola
OMERO.web - customizing webgateway - removing unused old viewer files
11:09 Ticket #1421 (FS Improvements) closed by cblackburn
fixed: Parts have been fixed, others broken out into separate tickets: * …
11:02 Ticket #1429 (Implement import-failed handler for DropBox import.) created by cblackburn
This ticket supersedes * Most importantly: implement import-failed …
11:02 Ticket #1428 (Allow configuring reader.txt to be used by `bin/omero import -f -l ...`) created by cblackburn
bin/omero import now supports an "-l" option which points to a readers …
11:02 Ticket #1427 (Add wildcard specification on the used-files list.) created by cblackburn
This ticket supersedes * Allow a wildcard specification on the …
11:02 Ticket #1426 (Move fsConfig parameters to default.xml) created by cblackburn
This ticket supersedes * Move fsConfig.py arguments to …
10:50 Ticket #1425 (DropBox import fails to import non-simple filenames in Windows) created by cblackburn
The fix to * Fix the Windows installation: events aren't being caught …

08/20/09:

15:20 Changeset [4754] by ola
OMERO.web - update for r4753
14:27 Changeset [4753] by ola
OMERO.web - django admin media dir changed
13:52 Changeset [4752] by ola
OMERO.web - django logging library added
13:00 Ticket #1378 (User name displaied all the time in the header.) closed by atarkowska
fixed: r4751
12:59 Changeset [4751] by ola
OMERO.web - #1196 - #1378 - WebAdmin? url names updated to not make any …
10:33 Changeset [4750] by jburel
updated documentation
10:25 Changeset [4749] by jburel
Updated documentation of the applySettingsToSet method
09:29 Changeset [4748] by callan
Fixed channel count tests.
09:22 Changeset [4747] by jburel
Add support for sreen. Save z-section and time-point while applying …

08/19/09:

15:52 Changeset [4746] by callan
Added environment pickup to metdata validator run script.
15:29 Changeset [4745] by callan
Updating to  bio-formats:r5398
13:09 Changeset [4744] by jburel
Added validation for applySettingToSet
13:06 Changeset [4743] by jburel
Modified the signature of the applySettingToSet
13:05 Changeset [4742] by jburel
Modified the signature of the applySettingToSet
12:19 Changeset [4741] by carlos
Small tweaks to webgateway, to help in extending elsewhere.

08/18/09:

21:14 Changeset [4740] by callan
Updating to  bio-formats:r5396
19:51 Changeset [4739] by callan
Updated to  bio-formats:r5395
14:32 Changeset [4738] by jmoore
OmeroMatlab : Another attempt at fixing artifact name
11:50 Changeset [4737] by jmoore
OmeroMatlab : Fixing name in build.xml to OMERO.matlab
11:34 Changeset [4736] by jmoore
OmeroScripts : Fixing processor.py path on Windows
11:34 Changeset [4735] by jmoore
DeleteService? : Adding log of deletePlate info
11:34 Changeset [4734] by jmoore
OmeroMatlab : Changing artifact name to OMERO.matlab
11:13 Ticket #1424 (python build.py -hudson broken on windows) created by jmoore
In addition to a problem with slice2html …
10:32 Changeset [4733] by donald
updated to work with new methods
10:12 Changeset [4732] by donald
added getPlaneStack which had existed in old gateway as new m file, …
Note: See TracTimeline for information about the timeline view.

1.2.1-PRO © 2008-2009 agile42 all rights reserved (this page was served in: 0.123176 sec.)