Timeline


and .

09/02/10: Yesterday

20:55 Ticket #2795 (Delete Test second phase) created by jburel
* Add tests to cover more extreme cases. * Add tests to cover objects …
20:31 Ticket #2794 (Decide on branching strategy for 4.2.1) created by jmoore
Due to the current use of trunk for the delete work, we will either need …
20:29 Ticket #2793 (Adding etc to classpath so spec.xml can be updated without recompile) created by jmoore
Either for testing or for production, the Spring configuration files like …
20:25 Ticket #2791 (Add EventLogs manually to the BasicSecuritySystem) closed by jmoore
fixed: (In [7906]) Adding EventLogs on Delete. (Fix #2791) * Required adding …
20:25 Changeset [7906] by jmoore
Adding EventLogs on Delete. (Fix #2791) * Required adding a method to …
20:17 Ticket #2792 (Handle non-deleted delete logs if possible) created by jmoore
#2791 provides a simple solution to recording which objects get deleted, …
20:14 Ticket #2673 (Add triggers to record all SQL deletes) closed by jmoore
wontfix: Due to the easier solution provided by #2791, closing this ticket.
20:13 Ticket #2791 (Add EventLogs manually to the BasicSecuritySystem) created by jmoore
As opposed to #2673 (triggers), adding event logs manually to the list …
16:52 Ticket #2736 (OA-viewer level slider) reopened by wmoore
16:44 Ticket #2790 (Run scripts from Image or Dataset) created by wmoore
Add as many existing scripts as possible to be called from Dataset or …
16:16 Changeset [7905] by atarkowska
missed import
15:58 Changeset [7904] by jburel
added test for updated scenario (see #2615)
15:26 Ticket #2789 (Demo server statistics in QA) created by atarkowska
15:24 Ticket #1379 (More statistics on Webadmin) reopened by atarkowska
15:17 Ticket #2774 (ROI service) closed by jburel
fixed: (In [7903]) Added for ROI service. Required to test the delete. (Closed …
15:17 Changeset [7903] by jburel
Added for ROI service. Required to test the delete. (Closed #2774)
14:59 Ticket #2665 (Dev can submit a delete to a queue) closed by jmoore
fixed: Moved open tickets to cleanup story (#2593). Closing since API is …
14:48 Ticket #2788 (Big machine provisioning) created by cxallan
One of the blade servers needs to be provisioned to provide resources for …
14:47 Ticket #2787 (Testing resources) created by cxallan
Various testing resources need to be put in place in order to efficiently …
13:55 Ticket #2786 (User can delete regardless of other users links) created by jmoore
In other words, check for any regressions between the previous IDelete
13:38 Ticket #2785 (ROI and measurement) created by jburel
Currently ROI measurements have to be linked to a plate, (and ROI) It is …
13:26 Changeset [7902] by jburel
improved XML mocks (see #2729)
13:26 Changeset [7901] by jburel
Added import tests (see #2757)
12:31 Changeset [7900] by jmoore
First support for instrument delete (See #2782) and CMC (Fix #2781)
12:31 Ticket #2781 (Add codomain map context to delete) closed by jmoore
fixed: (In [7900]) First support for instrument delete (See #2782) and CMC (Fix …
12:31 Changeset [7899] by jmoore
First Annotation delete support. All marked as soft. (Fix #2769)
12:31 Ticket #2769 (Annotations can be deleted in addition to annotation links) closed by jmoore
fixed: (In [7899]) First Annotation delete support. All marked as soft. (Fix …
11:48 Ticket #2784 (VM: Install Apache and setup webclient) created by dzmacdonald
add an install and setup for apache and the webclient to the install …
11:03 Ticket #2783 (Bug: duplicate trigger definitions) created by jmoore
In trunk/components/dsl/resources/ome/dsl/views.vm a hard-coded …
10:03 Ticket #2782 (Permit deleting of ImagingEnvironment, Instrument, etc.) created by jmoore
The instrument, imaging environment, stage label, etc subgraphs remain to …
10:02 Ticket #2781 (Add codomain map context to delete) created by jmoore
Currentlz, CMC is missing from the other rendering types.
09:58 Ticket #2780 (Delete can be made to fail if annotations aren't deleteable) created by jmoore
The default functionality as of #2769 is that an attempt is made to delete …
09:35 Changeset [7898] by wmoore
removing print statements from views.py - causing problems on mage. See …
08:52 Ticket #2779 (Fix windows-integration build and turn email back on) created by jmoore
I've just turned off email updates from OMERO-trunk-windows-integration, …
08:44 Ticket #2777 (SPW objects are deleteable) closed by jmoore
fixed: (In [7897]) Implementing support for SPW delete (Fix #2777) * Required …
08:44 Changeset [7897] by jmoore
Implementing support for SPW delete (Fix #2777) * Required refactoring …
08:39 Ticket #2778 (Develop hook within `DeleteHandleI` after tx for deleting binary) created by jmoore
Some reasonable amount of time should be appropriated to trying to …
08:15 Changeset [7896] by cxallan
Updating to  bio-formats:r6869; should fix small reading BinData? from small …
07:06 Ticket #2777 (SPW objects are deleteable) created by jmoore
The first versions of spec.xml did not include path specifications for …

09/01/10:

21:35 Ticket #2775 (BUG: loading light source) closed by jburel
fixed: (In [7895]) Added test for #2775 (Closed #2775)
21:35 Changeset [7895] by jburel
Added test for #2775 (Closed #2775)
21:34 Changeset [7894] by jburel
Fix method to loading light source (see #2775)
19:01 Ticket #2776 (Pixels.relatedTo are properly nulled on delete) created by jmoore
The previous deleteImage method tooks efforts to null Pixels.relatedTo
16:10 Ticket #2775 (BUG: loading light source) created by jburel
If several light sources of the same types are linked to an instrument, …
16:05 Ticket #2747 (VM: Snapshots) closed by dzmacdonald
wontfix: I have created a base install that we can use to then create a new VM on …
15:58 Changeset [7893] by jburel
Added test for ROI service (see #2774)
15:26 Changeset [7892] by jburel
cleaning
15:25 Changeset [7891] by jburel
First import tests (see #2757)
15:25 Changeset [7890] by jburel
first implementation of the mocks objects (see #2729)
15:09 Ticket #2774 (ROI service) created by jburel
Add tests for ROI service.
14:53 Ticket #2773 (VM: networking) closed by dzmacdonald
fixed
14:52 Changeset [7889] by dzmacdonald
Fixed error where cloned VM was getting new /dev/eth* because udev …
14:50 Ticket #2773 (VM: networking) created by dzmacdonald
When cloning a VM we create new networking card for the VM. As Ubuntu uses …
12:55 Ticket #2772 (Bug: OMSC.initialize leaks omero.client objects) created by jmoore
#initialize(String, String, String, int, long, boolean) creates an …
11:57 Ticket #2771 (Custom settings for EMDB) created by wmoore
Move all EMDB-specific stuff out of settings.py into emdb-settings (or …
09:15 Ticket #2770 (Annotations can be deleted by type and possibly namespace) created by jmoore
Since some types and namespaces are known to be unshared (like rating) a …
09:14 Ticket #2769 (Annotations can be deleted in addition to annotation links) created by jmoore
Currently, all spec.xml entries mention XAnnotationLinks but don't …
09:05 Ticket #2768 (Allow deleting of WellSamples on simple Image delete) created by jmoore
An "/Image" delete currently assumes that the image is not in plate. An …
09:04 Ticket #2767 (User can configure delete method) created by jmoore
As specified in #2615 and spec.xml, the options argument to queueDelete
07:30 Changeset [7888] by wmoore
Turning off EMAN2 functionality temporarily to get mage running. Using …

08/31/10:

22:11 Changeset [7887] by wmoore
First commit of working contour slider. Closes #2736
22:11 Ticket #2736 (OA-viewer level slider) closed by wmoore
fixed: (In [7887]) First commit of working contour slider. Closes #2736
15:59 Changeset [7886] by wmoore
Basic full text search of files annotating Projects (emd-xml). Closes …
15:59 Ticket #2756 (Full Text Search) closed by wmoore
fixed: (In [7886]) Basic full text search of files annotating Projects (emd-xml). …
15:58 Ticket #2766 (Projection count for qs.findAllByFullText()) created by wmoore
Want to filter search for pagination (#2762) but also know how many total …
15:46 Ticket #2765 (Bug: Channel.emWave==0 check missing) created by jmoore
From Melissa: […] seen as: […]
15:32 Ticket #2764 (BUG: OME-TIFF export fails with "Too many files") created by jburel
Possibly due to a leak in OMETiffWriter on close() the server runs out …
15:15 Ticket #2763 (BUG: Cannot retrieve the free space Feedback 2678) created by omero-qa
 http://qa.openmicroscopy.org.uk/qa/feedback/2678/ Comment: …
12:29 Ticket #2762 (BUG: qs.findAllByFullText filter) created by wmoore
Filter does not limit number of entries returned by …
11:12 Changeset [7885] by jburel
turned off deleteEmptyPlate
10:46 Changeset [7884] by dzmacdonald
updated to create correct folders for web client. (see #2679)
10:31 Changeset [7883] by jmoore
Refactoring most DeleteI methods to use DeleteHandleI to have tests …
10:01 Ticket #2761 (VM: Documentation) created by dzmacdonald
Add documentation for creating VM, installing OMERO: * Install VirtualBox?
08:43 Changeset [7882] by jburel
added more delete tests (see #2680)
08:11 Ticket #2760 (Binary data is removed after transaction) created by jmoore
As noted often on the mailing list, the fact that disk space is not freed …
00:46 Changeset [7881] by cneves-x
Fixing the default path for arrows of image viewport pan bars.
00:15 Changeset [7880] by cneves-x
Fixing conn.isAnonymous

08/30/10:

16:33 Ticket #2752 (Browse entries page) closed by wmoore
fixed: (In [7879]) Finished Entries page. Closes #2752
16:33 Changeset [7879] by wmoore
Finished Entries page. Closes #2752
16:13 Changeset [7878] by wmoore
Finished main functionality of 'entries' page and quick entryId …
15:48 Ticket #2680 (Delete Test) closed by jburel
fixed: This phase is done. Will create tickets for new required tests.
15:35 Ticket #2668 (Write Image tests for new delete API) closed by jmoore
fixed: (In [7877]) Minor corrections to queueDelete and passing integration tests …
15:35 Changeset [7877] by jmoore
Minor corrections to queueDelete and passing integration tests (See #2667, …
15:35 Changeset [7876] by jmoore
Fixing OmeroPy tests (See #1736)
15:35 Changeset [7875] by jmoore
Minor delete improvements (NPEs, logging) (See #2667)
15:35 Changeset [7874] by jmoore
Updating top-level .gitignore
14:28 Ticket #2759 (Bug: 100s of sessions created by OMERO.web) created by jmoore
From a log provided by Bram Gerritsen, it seems that OmeroWeb? is producing …
13:47 Ticket #2758 (Print memory settings in diagnostics or log) created by jmoore
The -Xmx and -Xms as well as PermGen settings should all get printed on …
11:43 Ticket #2757 (Import Test) created by jburel
Add Import tests various type of files
08:38 Changeset [7873] by jmoore
Correcting issue with DeleteHandle?.cancel() (See #2667)

08/29/10:

20:49 Ticket #2756 (Full Text Search) created by wmoore
Allow users to search all text in OMERO - ideally with auto complete.
10:07 Changeset [7872] by cxallan
Updated to  bio-formats:r6855

08/27/10:

17:10 Changeset [7871] by wmoore
Basic entries page done. See #2752. Just need to tidy a little.
16:32 Changeset [7870] by jburel
Refactor code to create mock in factory (see #2680 and #2729)
16:26 Ticket #2754 (Rendering Engine: channels w/o stats info) closed by jburel
fixed: it does not start. Exception thrown. don't know why I created that one
16:24 Ticket #2755 (Date annotations) created by wmoore
Add release and submission dates as time-stamp annotations.
16:21 Changeset [7869] by wmoore
New home page for web-emdb. Closes #2751.
16:21 Ticket #2751 (Home page) closed by wmoore
fixed: (In [7869]) New home page for web-emdb. Closes #2751.
16:18 Ticket #2754 (Rendering Engine: channels w/o stats info) created by jburel
Rendering should not start if the pixels set has channels w/o stats info. …
16:16 Ticket #2753 (RenderingSettings Service, Channel w/o stats info) created by jburel
Add control to the methods so that channels w/o stats info do not return …
15:50 Changeset [7868] by jmoore
Working queueDelete implementation. Time to add more features. (Fix #2667)
15:50 Ticket #2667 (Describe new delete API and provide trivial implementation) closed by jmoore
fixed: (In [7868]) Working queueDelete implementation. Time to add more features. …
15:50 Changeset [7867] by jmoore
Silencing TopicManager during testing
14:38 Ticket #2752 (Browse entries page) created by wmoore
Like the publications page, but with all entries! Resolution should be …
14:31 Ticket #2751 (Home page) created by wmoore
Need to show random? entry gifs, latest entry details.
12:44 Ticket #2738 (Full viewer link for maps) closed by wmoore
fixed: Fixed as part of r7866
12:43 Changeset [7866] by wmoore
Finished map model page for now. Closes #2735.
12:43 Ticket #2735 ('MapModel' page) closed by wmoore
fixed: (In [7866]) Finished map model page for now. Closes #2735.
12:19 Ticket #2750 (BUG: Exporter: annotation ID not valid) created by ajpatterson
Annotations exported is not compatible with schema, this means that the …
11:43 Ticket #2749 (BUG: Exporter: acquisition time not valid) created by jburel
Acquisition time exported is not compatible with schema, this means that …

08/26/10:

16:55 Ticket #2748 (VM: ssh) created by dzmacdonald
Currently we've set up the install to VM to work from scripts without user …
16:54 Ticket #2747 (VM: Snapshots) created by dzmacdonald
Investigate if we can create snapshots in deploy of VM, this is not …
16:50 Ticket #2746 (VM: Testing) created by dzmacdonald
Test that the VM installs work, that the links are created for starting …
16:49 Ticket #2745 (VM: Other client) created by dzmacdonald
Add other clients completely to OMERO: * Cellprofiler * CellProfiler?
16:47 Ticket #2744 (VM: Hudson) created by dzmacdonald
Add VM creation to hudson
16:47 Ticket #2743 (VM: API) created by dzmacdonald
Look at the API for VirtualBox?, this may allows us to interact with VB in …
16:45 Ticket #2742 (VM: Demo Data) created by dzmacdonald
Add Demo data to the VM. look at methods for suppling demo data that can …
16:44 Ticket #2741 (VM: Create 'OME' branding to VM) created by dzmacdonald
Add OME Branding to OMERO * backdrop * program icons * links to mail, …
13:58 Ticket #2740 (BUG:Folder Selection) created by jburel
Select a folder with few DICOM files and a text file. No feedback in …
13:43 Changeset [7865] by dzmacdonald
added the script to start OMERO at init. (see #2678)
12:54 Changeset [7864] by dzmacdonald
fixed ssh, still having issues with SSH_ASKPASS on mac (see #2678)
12:31 Changeset [7863] by dzmacdonald
updated to take parameters or env vars (see #2678)
11:52 Changeset [7862] by wmoore
Work with Ingvar on mapmodel page and resolution annotation. See #2735
11:50 Changeset [7861] by wmoore
Script form validation. Part of previous commit. See #2720.
11:46 Changeset [7860] by wmoore
Some validation for emdb scripts. Only allow numbers for numeric fields. …
11:41 Ticket #2739 (Upload scripts in bin/omero plugin) created by wmoore
Put the emdb2omero script in to the plugin framework, to allow users to do …
11:40 Ticket #2738 (Full viewer link for maps) created by wmoore
Give a link from the entry page to the full viewer for the map.
10:14 Changeset [7859] by jmoore
Moving spec.xml to server/resources to be picked up by build (See #2667)
09:58 Ticket #2737 (Display Segger results) created by wmoore
OA-viewer can display segger results already. Just need to attach them to …
09:57 Ticket #2736 (OA-viewer level slider) created by wmoore
Need basic level slider for full maps.
09:55 Ticket #2735 ('MapModel' page) created by wmoore
Do something like …
09:52 Changeset [7858] by jmoore
Adding missing Spring config file to beanRefContext.xml (See #2667)
09:48 Ticket #2732 (Protected fields in Callback) closed by jmoore
fixed: (In [7856]) Making callback protected for subclass use (See #2731, #2732)
09:32 Changeset [7857] by jmoore
Nearly complete implementation of IDelete.queueDelete (See #2667) * …
09:32 Changeset [7856] by jmoore
Making callback protected for subclass use (Fix #2731)

08/25/10:

20:49 Ticket #2734 (Port ThreadPool to rendering et al) created by jmoore
For #2665, a ThreadPool for internal, critical, background tasks was …
16:22 Changeset [7855] by dzmacdonald
Installer will createVM from base VM install, copy scripts to new VM, …
16:06 Ticket #2733 (BUG:Feedback 2657) created by omero-qa
 http://qa.openmicroscopy.org.uk/qa/feedback/2657/ Comment: Tried …
15:16 Changeset [7854] by atarkowska
webclient integration
08:50 Changeset [7853] by jburel
cleaning tests (see #1736)
08:33 Changeset [7852] by jburel
remove unused import
08:23 Ticket #2732 (Protected fields in Callback) created by jburel
Modify the visibility of the handle in ProcessCallbackI and …

08/24/10:

22:29 Changeset [7851] by cxallan
Updating to  bio-formats:r6841
16:29 Ticket #2731 (Create delete callback for client-side polling) closed by jmoore
fixed: (In [7850]) First version of client-side callback object for delete queue …
16:29 Changeset [7850] by jmoore
First version of client-side callback object for delete queue (Fix #2731)
16:23 Ticket #2731 (Create delete callback for client-side polling) created by jmoore
Similar to ProcessCallbackI which does not consume a server thread for …
13:55 Ticket #2730 (Add support for SPIM data) created by ajpatterson
* Model additions for instrument * Model additions for image data …
12:41 Ticket #2729 (XML mocks) created by cxallan
In addition to #2680, a series of delete mock OME-XML files should be …
12:36 Changeset [7849] by cneves-x
Tweaking play buttons in viewport. Changing download helper button from …
11:14 Ticket #2655 (Downsample bit masks) closed by wmoore
fixed: Fixed. See #2606 for attached scripts.
11:11 Ticket #2606 (Entire EMDB repo into OMERO) closed by wmoore
fixed: All apart from biggest maps (over 300 MB) uploaded. Maps attached to …
10:47 Changeset [7848] by dzmacdonald
Scripts for installing OMERO/CellProfiler on Ubuntu and script for …
10:06 Changeset [7847] by jmoore
Correcting etc/grid/templates.xml error
09:41 Changeset [7846] by jburel
cleaning code
09:38 Ticket #2728 (Accessing the binary data) created by cblackburn
Once a file has had its metadata imported via a repository the client …
09:20 Changeset [7845] by jmoore
Quietly closing all services on OMSC close
09:20 Changeset [7844] by jmoore
DeleteBean no longer loads objects into memory (See #1708)
09:20 Changeset [7843] by jmoore
Minor fixes to thumbnail service found during delete testing
09:20 Changeset [7842] by jmoore
Minor test fixes while working on delete (See #1736, #1708)
09:19 Changeset [7841] by jmoore
Extending timeout for server tests to at least 500ms (See #1736)
09:19 Changeset [7840] by jmoore
Various fixes of NPEs etc.
09:19 Changeset [7839] by jmoore
Stopping FullTextIndexer during tests and fixing import.
09:08 Ticket #2727 (Term annotation Test) created by jburel
Write for retrieval of Term annotation
09:08 Changeset [7838] by jburel
Fixing enumeration tests problems
09:07 Ticket #2718 (Term Annotation First step) closed by jburel
fixed

08/23/10:

21:07 Changeset [7837] by jburel
Added more tests for new delete API (see #2680)
18:12 Changeset [7836] by jburel
Turn back on tests related to resetting min max and applying rendering …
18:12 Ticket #2611 (BUG: rendering settings: set min max) closed by jburel
fixed: (In [7836]) Turn back on tests related to resetting min max and applying …
18:12 Ticket #2714 (Bug: rendering settings) closed by jburel
fixed: (In [7836]) Turn back on tests related to resetting min max and applying …
18:11 Changeset [7835] by jburel
fixed bugs when apply settings or resetting min max (See #2611 and #2714)
18:10 Changeset [7834] by jburel
merge fixes related to rendering settings bug (See #2611 and #2714)
18:08 Changeset [7833] by jburel
merge fixes related (see #2711)
17:39 Ticket #2721 (Database for processors) closed by wmoore
fixed: (In [7832]) Use session to store processor map instead of db. Closes …
17:39 Changeset [7832] by wmoore
Use session to store processor map instead of db. Closes #2721.
17:30 Changeset [7831] by wmoore
Fixed a comment-out in EMAN2 import. See #2723
16:46 Changeset [7830] by cxallan
Updating to  bio-formats:r6836.
16:39 Ticket #2722 (Script 'Cancel') closed by wmoore
wontfix: Not sure this works - JM has doubts, not implemented in Insight. Also, no …
14:53 Changeset [7829] by wmoore
EMAN2 import happens in 'main' thread (does not fail). See #2723
14:44 Ticket #2726 (RenderingSettings service. Returned values) created by jburel
While working in RenderingSettings service, I noticed that the method …
14:29 Changeset [7828] by jburel
fixing broken tests
13:24 Ticket #2725 (Define API for Term Annotation) created by jburel
Define the methods required to handle term annotation
13:23 Ticket #2724 (Add PixelsType.bits to db for easier counting) created by jmoore
Rather than making queries of the form: […] and then manually adding …
13:22 Changeset [7827] by jburel
fixing broken test
12:45 Ticket #2723 (mage: EMAN2 + IMOD) created by wmoore
Install these on mage, so that they can be used by web-emdb scripts. …
12:39 Ticket #2722 (Script 'Cancel') created by wmoore
Look at how to cancel a script running.
12:39 Ticket #2721 (Database for processors) created by wmoore
Store processor string values in Django DB instead of in the views.py …
12:36 Ticket #2720 (Script validation) created by wmoore
Client-side and in views.py.
12:35 Ticket #2690 (Scripting service) closed by wmoore
fixed: (In [7826]) Basically working scripts from web emdb. Still lots to tidy …
12:35 Changeset [7826] by wmoore
Basically working scripts from web emdb. Still lots to tidy up, but this …
11:59 Changeset [7825] by jburel
Added tests for creation and deletion of Term annotation (see #2718 and …
11:58 Changeset [7824] by jburel
Added methods to Term annotation data (see #2718)
11:56 Changeset [7823] by atarkowska
more changes to r7768
11:37 Ticket #2719 (Ontology support) created by jburel
= Description = See [ http://trac.openmicroscopy.org.uk/shoola/ticket/1558
11:20 Changeset [7822] by jburel
Added more tests in preparation of the new delete service (see #2680)
10:31 Ticket #2718 (Term Annotation First step) created by jburel
* Write test for Term annotation creation * Create/Update corresponding …
09:02 Changeset [7821] by jburel
Added tests for rendering settings service method (see #2611)
09:01 Ticket #2717 (Establish where/when large performance tests will be run) created by jmoore
Testing memory issues and other bottleneck scenarios cannot be done in the …
08:18 Ticket #2716 (Bug: PermGen OOM thrown during testing) created by jmoore
Before the change in r7815 to pass -XX:MaxPermSize= to Blitz, the server …
08:16 Ticket #2715 (Add test for `bin/omero admin start|deploy` with arguments) created by jmoore
While working on #1736 changes (r7819 etc) were made to deployment which …

08/22/10:

20:09 Changeset [7820] by jmoore
Reverting r7819 since "deploy" is only possible with an existing app.
14:25 Changeset [7819] by jmoore
Modifying admin.py for using memcfg on 'start' and not just 'deploy' …
09:33 Changeset [7818] by jburel
Added more tests for rendering settings for plate (See #1736)

08/21/10:

23:09 Changeset [7817] by jmoore
Adding omero.client.getStatefulServices() to all OmeroClients for better …
23:09 Changeset [7816] by jmoore
Adding AbstractAmdServant as superclass to OmeroGateway for proper …
23:09 Changeset [7815] by jmoore
Making -Xmx and -XX:PermGen configurable on server start (See #1736) …
23:09 Changeset [7814] by jmoore
Enabling per-group OmeroJava tests (See #1736) `./build.py -f ... test …
23:09 Changeset [7813] by jmoore
Fixing NPE on tear down after connection failure (See #1736)
20:35 Ticket #2714 (Bug: rendering settings) created by jburel
Reset or apply settings to an empty dataset leads to an exception. Similar …
11:44 Ticket #2713 (Bug: hdfstorage locking broken) closed by jmoore
fixed: Fixed by r7812 (`Correcting hdfstorage locking, test commented out in …
11:43 Changeset [7812] by jmoore
Correcting hdfstorage locking, test commented out in r7715 (See #2067, Fix …
11:43 Changeset [7811] by jmoore
Also passing omero.data.dir to test-server (See #1736)
11:41 Ticket #2713 (Bug: hdfstorage locking broken) created by jmoore
In r7715 a hard-failure was commented out for …
10:00 Changeset [7810] by jmoore
Passing omero.db.* properties to builds (See #1736)
08:21 Changeset [7809] by jburel
Added more tests for new delete api (see #2680)

08/20/10:

16:54 Changeset [7808] by wmoore
More feedback on scripting service for web. See #2690
16:13 Changeset [7807] by jburel
Added more tests in preparation (see #2680)
16:12 Ticket #2711 (BUG: ROI polyline) closed by jburel
fixed: r7805
16:11 Changeset [7806] by jburel
Added test for the creation of rois with different types of shape (closed …
16:10 Changeset [7805] by jburel
Added doc and Fixed exception returned when parsing points (see #2711)
16:09 Changeset [7804] by jburel
Fixed exception returned when parsing points (see #2711)
16:07 Ticket #2712 (ROI shape support in Popo) created by jburel
Not all Shape types supported in Popo i.e. Ellipse, rectangle, polygon and …
15:38 Ticket #2711 (BUG: ROI polyline) created by jburel
ClassCastException in Pojos while creating ROI with polylines.
15:08 Ticket #2609 (BUG: Guest account has no password set in database) closed by atarkowska
fixed
14:48 Changeset [7803] by cxallan
Updating to  bio-formats:r6822
14:47 Ticket #2710 (BUG: ROI w/o image) created by jburel
In order to have ROI template, it was decided to have the ability to …
14:24 Changeset [7802] by cxallan
Fixing Image retrieval query from r7795.
13:46 Changeset [7801] by jburel
Added test for deleting plate (see #2680)
13:45 Ticket #2709 (Delete Plate with Plate Acquisition) created by jburel
Deleting a plate with Plate Acquisition. Follow the error […]
12:48 Changeset [7800] by wmoore
More work on scripting from web-emdb. See #2690
12:44 Ticket #2708 (BUG: useragent hardcoded in omero.gateway) closed by atarkowska
fixed
12:43 Changeset [7799] by atarkowska
this fixes #2708
12:42 Ticket #2708 (BUG: useragent hardcoded in omero.gateway) created by atarkowska
useragent could be configurable
12:36 Changeset [7798] by cxallan
Fixing Image retrieval query from r7795.
12:30 Ticket #2706 (BUG: joinSession thrown exception) closed by atarkowska
fixed: (In [7797]) this fixes #2706, detachOnDestroy() required
12:30 Changeset [7797] by atarkowska
this fixes #2706, detachOnDestroy() required
12:15 Ticket #2654 (BUG:Feedback 2590) closed by bwzloranger
fixed
11:59 Changeset [7796] by jmoore
Removing more duplicate test runs from test-server (See #1736)
11:59 Ticket #2707 (Load Wells from Plate) created by jburel
Move the code to load wells and wells sample to the IContainer service …
11:44 Changeset [7795] by cxallan
Removing usage of the gateway in an attempt to fix lingering stateful …
11:40 Changeset [7794] by atarkowska
merging some of the changes from r7768
11:32 Changeset [7793] by cxallan
Fix typo in root_login_args. (See #2067)
11:26 Changeset [7792] by atarkowska
unexpected line commented
11:14 Changeset [7791] by atarkowska
- more changes for r7768 - test for #2706
11:12 Ticket #2706 (BUG: joinSession thrown exception) created by atarkowska
[…]
11:10 Changeset [7790] by cxallan
Fixing the verbosity of the failure message for "test1184". (See #2067)
10:38 Changeset [7789] by jburel
Added test for Image acquisition and test for delete (see #2680)
09:30 Changeset [7788] by cxallan
More verbose failure message for performance related test "test1184". (See …
09:13 Changeset [7787] by jburel
Fixed broken test related to version (See #2067)
09:11 Changeset [7786] by cxallan
Make sure that a port argument is passed on all import attempts during …
09:10 Changeset [7785] by jmoore
Fixing OmeroTables tests (See #1736)
08:46 Changeset [7784] by cxallan
Without specifying a data type 'int64' can be used (and is with a newer …
01:58 Changeset [7783] by cneves-x
Adding isAnonymous to blitz gateway

08/19/10:

22:01 Changeset [7782] by jburel
Fixing various tests (see #1736)
21:55 Ticket #2705 (Delete File Annotation) created by jburel
When deleting a File annotation, the original file linked to it should …
21:51 Ticket #2704 (Image-Image link) created by wmoore
Add table for Image-Image link See #1650 Josh - If you've got time to …
17:42 Changeset [7781] by jburel
Prepare code for delete (see #2680)
16:46 Changeset [7780] by jmoore
bin/omero admin ports now appends omero.port=... to etc/ice.config …
16:31 Ticket #2703 (Bug: processor.py fails when run on non-standard port) created by jmoore
Since processor.py uses etc/ice.config for its defaults and does not have …
16:24 Ticket #2702 (Bug: bin/omero admin ports should not run on running server) created by jmoore
If icegridnode is running and a user runs bin/omero admin ports then the …
16:24 Changeset [7779] by wmoore
More work on scripting service from web-emdb. See #2690
16:23 Changeset [7778] by wmoore
Make the Scripting service available from blitz gateway. See #2690
16:22 Changeset [7777] by wmoore
Fixed bug for 2D images. See #2690
16:18 Changeset [7776] by jmoore
Fixing misisng type.xml for dsl tests (See #1736)
16:18 Changeset [7775] by jmoore
Moving model integration tests to server/test/ome/services/db/ (See #1736)
16:18 Changeset [7774] by jmoore
Removing unused (old) dbcp-based ConfigHelper (See #1736)
15:36 Changeset [7773] by jburel
Tests missing enumeration
14:20 Changeset [7772] by jmoore
Upping timeout to 30 seconds on OmeroJava tests (See #2074)
13:59 Ticket #2701 (Microbeam manipulation support) created by jburel
MetadataService Improve call to support microbeam manipulation
13:58 Ticket #2700 (Logical Channel OTF support) created by jburel
MetadataService: Improve call to support OTF Creating corresponding POJO
13:57 Ticket #2682 (BUG: Light source not propertly loaded) closed by jburel
fixed: (In [7771]) Added tests to check loading metadata (closed #2682)
13:57 Changeset [7771] by jburel
Added tests to check loading metadata (closed #2682)
13:56 Changeset [7770] by jburel
Fixed load light source issue (see #2682)
13:37 Changeset [7769] by jburel
Fixed query to load properly the light source (see #2682)
12:07 Ticket #2699 (BUG:Feedback 2605) created by omero-qa
See ticket for correspondence. …
12:02 Ticket #2698 (BUG:Feedback 2610) created by omero-qa
 http://qa.openmicroscopy.org.uk/qa/feedback/2610/ Comment: tell …
11:56 Ticket #2697 (BUG:Feedback 2645) created by omero-qa
 http://qa.openmicroscopy.org.uk/qa/feedback/2645/ […]
11:52 Ticket #2696 (BUG:Feedback 2650) created by omero-qa
 http://qa.openmicroscopy.org.uk/qa/feedback/2650/ Comment: TIFF …
11:44 Ticket #2695 (Bug: ./build.py test-compile build-eclipse adds OMERO jars) created by jmoore
lib/cache/omero/server/*.jar and all the other OMERO jars are added to …
11:28 Ticket #2694 (Remove shape.pg_geom column on upgrade) created by jmoore
#2691 (a part of DB-independence #73) disabled the shape.pg_geom table. In …
11:26 Ticket #2693 (Refactor all uses of createSQLQuery) created by jmoore
Similarly to #2692, any use of org.hibernate.Session.createSQLQuery
11:25 Ticket #2692 (Introduce SqlAction for all uses of JdbcTemplate) created by jmoore
The use of JDBC is spread throughout the code base, making refactoring and …
11:24 Ticket #2691 (Disable shape.pg_geom in GeomTool) created by jmoore
As a part of supporting other databases, the currently unused …
10:36 Changeset [7768] by atarkowska
Moving common functions to the omero.gateway. 'extlib' no longer needed. …
10:03 Changeset [7767] by wmoore
Script to process images using commandline - Requires IMOD. See #2690.
10:02 Ticket #2690 (Scripting service) created by wmoore
Implement a specific use case of the scripting service, to do 'Nonlinear …
09:24 Ticket #2689 (`bin/omero` commands should not rely on "psql") created by jmoore
The bin/omero db script command always load sql/psql/* to create its …
09:20 Ticket #2688 (Build/deployment should be DB-independent) created by jmoore
Several hard-coded uses of "psql" or similar are present throughout the …
08:57 Ticket #2687 (Add CLI delete for all supported types) created by jmoore
Currently bin/omero delete only supports Images and Plates. Based on the …
08:45 Ticket #2686 (Diagnostics has hard-coded PostgreSQL exceptions) created by jmoore
OmeroPy/src/omero/plugins/admin.py has hard-coded postgres exceptions. …
08:45 Ticket #2685 (Exception handling should be DB-independent.) created by jmoore
Several places currently make assumptions based on the JDBC driver …
08:44 Ticket #2684 (Devs should have a single place to make all JDBC calls.) created by jmoore
At the moment, JDBC calls are spread around the entire code base. These …

08/18/10:

23:22 Changeset [7766] by cneves-x
webgateway javascript download helper now triggers download on an iframe …
17:04 Changeset [7765] by cblackburn
Removing old and now unnecessary projection test. (See #2067)
16:54 Ticket #2683 (Delete in IUpate) created by jburel
The update service has a deleteObjects method. This should probably …
16:45 Changeset [7764] by jburel
Refactored tests to improve the delete tests. (see #2680)
16:15 Ticket #2682 (BUG: Light source not propertly loaded) created by jburel
The loadInstrument does not properly load the laser, arc or …
15:28 Changeset [7763] by jmoore
Adding missing implementation for DeleteHandle (See #2667)
15:19 Ticket #2681 (Make movie of all delete actions) created by jmoore
A movie should be made available which shows which items can be deleted …
15:11 Changeset [7762] by jmoore
Initial sketch of an asynchronous Delete API (See #2667) The …
15:11 Changeset [7761] by jmoore
Adding test-server target to prevent re-running tools/ tests (See #1736)
15:11 Changeset [7760] by jmoore
Removing unused ome.services.util.cache (See #2596)
13:54 Ticket #2680 (Delete Test) created by jburel
Add tests to support new methods and possible workflow. This will be first …
13:53 Ticket #2065 (Move tests from client/test to OmeroJava/test) closed by jburel
fixed
13:52 Ticket #2650 (Java Test:service) closed by jburel
fixed: closing tickets. we have reached an acceptable level
13:48 Ticket #2679 (Create VM) created by dzmacdonald
Create a VM, preferrably from script so that we can have an easy install, …
13:46 Ticket #2678 (Virtual Machine) created by dzmacdonald
By creating a VM of an OMERO server we can: * make installing easier for …
09:48 Ticket #2677 (Add delete-filters to other services.) created by jmoore
Apply filters (#2676) to any services which would like to take part in the …
09:47 Ticket #2676 (Develop filters which prevent delete-queued objects from being returned to ...) created by jmoore
In many cases, users will not want to see objects which have been marked …
09:45 Ticket #2675 (Test delete queue concurrently for hangs and bottlenecks) created by jmoore
Each delete queue implementation has several possibilities for contention …
09:43 Ticket #2674 (Add method for obtaining a report of deletes) created by jmoore
Either via EventLogs or some other report object, users should be able …
09:40 Ticket #2673 (Add triggers to record all SQL deletes) created by jmoore
As the story description outlines, usages of executeUpdate do not create …
09:30 Ticket #2672 (Develop ram and/or db queue structure for delete) created by jmoore
The state of the delete service will have to reside somewhere. Options …
09:28 Ticket #2671 (Create superclass for omero.client in all languages) created by jmoore
In order to reduce/prevent API breakage, a new client class will be …
09:26 Ticket #2670 (Simple API prototype: delete) created by jmoore
As opposed to the method defined by #2667 (story: #2665), a "simple" API …
09:19 Ticket #2669 (Write definitive examples for delete using new API) created by jmoore
Documentation beyond the slice documentation should be added for …
09:18 Ticket #2668 (Write Image tests for new delete API) created by jmoore
09:18 Ticket #2667 (Describe new delete API and provide trivial implementation) created by jmoore
The new API should look something like: […] NB: The initial …
09:16 Ticket #2666 (Delete functionalities in all clients) created by jburel
Synchronize clients. * make distinction between delete and remove. * …
09:16 Ticket #2665 (Dev can submit a delete to a queue) created by jmoore
Regardless of performance improvements to delete (#2593), some deletes …

08/17/10:

15:54 Changeset [7759] by wmoore
Simple EMAN2 processing by Django in web EMDB. Closes #2664
15:54 Ticket #2664 (View EMAN2 processing) closed by wmoore
fixed: (In [7759]) Simple EMAN2 processing by Django in web EMDB. Closes #2664
15:34 Ticket #2664 (View EMAN2 processing) created by wmoore
EMAN2 processing can be called from Django to present simple filtering …
15:33 AlternativeStorage edited by jburel
(diff)
15:28 AlternativeStorage edited by jburel
(diff)
15:26 AlternativeStorage edited by jburel
(diff)
10:04 Ticket #2662 (integration.isession.TestISession.testCreateSessionForGuest failed) created by atarkowska
integration.isession.TestISession.testCreateSessionForGuest (from …
10:03 Ticket #2661 (integration.ishare.TestIShare.test1179 failed ValidationException) created by atarkowska
It happened only on hudson integration.ishare.TestIShare.test1179 (from …
01:30 Changeset [7758] by cneves-x
Allowing download of selected images from a figure as OME-TIFF.

08/16/10:

17:25 Changeset [7757] by bwzloranger
fixes #2654 (UUID bug)
17:06 Changeset [7756] by bwzloranger
fixes #2654 (UUID bug)
14:47 Changeset [7755] by bwzloranger
fix for hardcoded ini.version at startup and about box in Importer, now …
14:44 Ticket #2660 (User can query/filter if an object will be deleted.) created by jmoore
Since deleting some objects takes a significant amount of time, an …
14:43 Changeset [7754] by bwzloranger
fix for hardcoded ini.version at startup and about box in Importer, now …
14:42 Changeset [7753] by bwzloranger
update error reporting for UUID bug in metadata store (see #2654)
14:26 Changeset [7752] by jmoore
Fixing ping.py (See #2067) including no more EndpointParseExceptions
14:26 Ticket #2659 (Bug: Ice.initialize() fails if default router is "ssl") closed by jmoore
fixed: (In [7752]) Fixing ping.py (See #2067) including no more …
14:06 Ticket #2659 (Bug: Ice.initialize() fails if default router is "ssl") created by jmoore
The PINGFILE script used in OmeroPy/test/scriptstest/ping.py calls …
14:03 Changeset [7751] by bwzloranger
update error reporting for UUID bug in metadata store (see #2654)
12:23 Changeset [7750] by cneves-x
Fixing the NPE when saving rend settings object not owned, removing hack …
10:19 Changeset [7749] by jburel
cleaning test and improved some (see #2650)
10:03 Changeset [7748] by wmoore
Adding Python integration tests see #2067, one of which fails: See #2658.
10:02 Ticket #2658 (python gateway close()) created by wmoore
Gateways created with session.createGateway() seem to leave some services …
09:11 Changeset [7747] by jburel
re-organizing test

08/14/10:

08:50 Changeset [7746] by jburel
Added tests for the raw pixels store (see #2065)

08/13/10:

18:45 Changeset [7745] by cneves-x
Image cache invalidation was not correctly invalidating companion thumbs.
17:35 Changeset [7744] by wmoore
Viewing downsampled mrc maps as well as bit masks. Not finished yet. See# …
17:33 Changeset [7743] by jburel
cleaning tests
17:33 Changeset [7742] by jburel
Added tests for script service (see #2650)
16:28 Changeset [7741] by jburel
Added tests for the Exporter service (see ticket #2650)
16:27 Ticket #2657 (BUG: Exporter: create OME-TIFF) created by jburel
Exporter service If an image does not have annotation attached to …
16:09 Changeset [7740] by cblackburn
Test completes locally. The paths in the import_image() helper method may …
15:14 Changeset [7739] by cblackburn
The test now runs to completion. It now fails because the parameter types …
14:52 Changeset [7738] by cblackburn
The test now runs to completion but fails due to a key error rather than …
14:26 Changeset [7737] by jburel
forgot to close the rawfile store (see ticket #2650)
14:24 Changeset [7736] by jburel
Added tests for the rawFileStore (see ticket #2650)
12:54 Changeset [7735] by cblackburn
Fixed processor availability but this has probably revealed underlying …
12:04 Changeset [7734] by jburel
Added more test for rendering engine (see ticket #2650)
12:02 Changeset [7733] by cxallan
Fixed build errors in more C++ examples. (#1736)
10:59 Changeset [7732] by cblackburn
Two tests against guest user commented out. Rexamine after making a …
10:28 Changeset [7731] by cblackburn
Two more occurences of createTestImage failing (see r7730) Can't reproduce …
10:12 Changeset [7730] by jburel
Added more tests, to admin, rendering settings, pixels service (see #2650
09:30 Changeset [7729] by cblackburn
test880 fails to create its fixture on Hudson. Can't reproduce locally so …
09:05 Ticket #2656 (API evolution) created by jburel
We currently have a large number of services. Several similar methods are …
02:48 Changeset [7728] by cneves-x
Single OME-TIFF export also tries to use WebGatewayTempFile? now, so web …
02:48 Changeset [7727] by cneves-x
Helper js function to show modal dialog warning of ongoing download.

08/12/10:

21:47 Changeset [7726] by cneves-x
Last commit missed import statement
21:06 Changeset [7725] by cneves-x
making save of rendering settings not fail if user is not owner of rdef …
19:19 Changeset [7724] by cxallan
Fixing ROI Java example compile errors. (See #1736)
12:13 Changeset [7723] by bwzloranger
additional logging enabled for method byUUID in OmeroMetaDataStore? (See …
12:13 Ticket #2654 (BUG:Feedback 2590) reopened by bwzloranger
03:00 Changeset [7722] by cneves-x
Adding WebGatewayTempFile?, to support serving generated files as web …

08/11/10:

22:00 Changeset [7721] by wmoore
Reverting the 'replace' command for Open Astex Viewer and fixing bit mask …
21:20 Changeset [7720] by wmoore
Use 'map replace' to help memory issues of Open Astex viewer. See #2603
17:50 Changeset [7719] by cblackburn
test989 removed. tests 880, 883Upload and 985 forced to pass. duplicate …
16:40 Changeset [7718] by jburel
Added tests for the Pixels service (see #2650)
16:40 Changeset [7717] by jburel
Added more test to the various services (see #2065)
14:40 Changeset [7716] by wmoore
Fixed preview gif to use same code as getFile() for EMDB. See #2603
14:39 Ticket #2655 (Downsample bit masks) created by wmoore
Make sure that all bit masks are small enough to see in OA-viewer applet …
14:04 Ticket #2654 (BUG:Feedback 2590) closed by bwzloranger
fixed: Fixed now in the current build (r7715) for release 4.2.1.
13:27 Changeset [7715] by cblackburn
3 hard fails commented out. (See #2067)
13:24 Changeset [7714] by jburel
Added tests for the configuration service (see #2065)
12:03 Ticket #2654 (BUG:Feedback 2590) created by omero-qa
 http://qa.openmicroscopy.org.uk/qa/feedback/2590/ Comment: The …
11:45 Changeset [7713] by wmoore
This allows testSpeedOfThumbnailFigure test to pass. See #2653
11:40 Ticket #2653 (python integration tests) created by wmoore
Get python integration tests working locally first…
10:55 Changeset [7712] by jburel
Added tests for creation of ROI (see #2650)
10:54 Changeset [7711] by jburel
Added doc and removed some imports
10:30 Changeset [7710] by cblackburn
Removing std output from api.cpp as this breaks the xml schema for xUnit. …
09:46 Changeset [7709] by cblackburn
Switching back to putting log output in .xml file to check xUnit. (See …

08/10/10:

21:34 Ticket #2649 (Link to full viewer) closed by wmoore
fixed: (In [7708]) Basic link to viewer from thumbnails in EMDB datasets. Fixes …
21:34 Changeset [7708] by wmoore
Basic link to viewer from thumbnails in EMDB datasets. Fixes #2649
16:51 Changeset [7707] by cxallan
Trying STDERR going to boost-integration.xml and STDOUT going to …
16:32 Changeset [7706] by jburel
Added more tests (see #2650 and see #2065)
16:30 Changeset [7705] by jburel
Minor changes
16:28 Ticket #2652 (Java Test: Delete service) closed by jburel
fixed
16:28 Ticket #2651 (Java Test: Admin service) closed by jburel
fixed
16:27 Ticket #2652 (Java Test: Delete service) created by jburel
Add test for Delete Service. The tests will cover the method actually used …
16:26 Ticket #2651 (Java Test: Admin service) created by jburel
Add Test for the Admin service. The tests will cover the method actually …
16:25 Ticket #2650 (Java Test:service) created by jburel
Add Test for the following services: * ROI service * Admin service * …
16:23 Ticket #2069 (Define testing strategy and document it!) closed by jburel
fixed: Closing ticket. Test in the OMERO java integration package have been …
16:01 Changeset [7704] by cxallan
Reverting r7703 we'll do the test.with.fail variable removal in Hudson …
15:57 Ticket #2642 (Check all parts of every entry) closed by wmoore
fixed: Only import entries for which we have the xml, map, 50-gif and 400 gif. …
15:08 Changeset [7703] by cxallan
Removing fail on error from C++ integration test exec. (See #2067)
15:02 Ticket #1722 (Feedback 163: status unreadable) closed by bwzloranger
fixed: (In [7702]) Fixes #1722, Fixes error in eTable when tool tips are null
15:02 Changeset [7702] by bwzloranger
Fixes #1722, Fixes error in eTable when tool tips are null
13:51 Changeset [7701] by wmoore
Use 400 gif for EMDB entry preview. See #2642
13:27 Changeset [7700] by jburel
Added more tests to Admin and repository info (see #2065)
13:26 Changeset [7699] by jburel
Added more tests to Admin and repository info
13:09 Changeset [7698] by cblackburn
Change to logging and report levels for cpp integration tests. See #2067
13:07 Changeset [7697] by cxallan
Reverting erroneous changes to test/integration/api.cpp and …
13:05 Changeset [7696] by cxallan
Completed overhaul of the search C++ tests. (See #2067)
12:26 Changeset [7695] by jburel
Added more tested for container service and annotation handling (see …

08/09/10:

15:27 Changeset [7694] by atarkowska
webmobile more similar to the iphone application
14:34 Ticket #2649 (Link to full viewer) created by wmoore
Every thumbnail in the data and dataset pages should be a link to the full …
14:32 Ticket #2645 (BUG: Viewport) closed by wmoore
14:31 Changeset [7693] by wmoore
Fixed viewport using iframe. Fixes #2645
14:28 Changeset [7692] by cneves-x
changing exportOmeTiff to get an extra argument for context (image, …
13:03 Changeset [7691] by jburel
fixing broken tests (cf. ticket #2067)
12:28 Changeset [7690] by jburel
fixing broken tests (cf. ticket #2067)
12:27 Ticket #2532 (BUG: Importer - adding a folder to the import queue) closed by bwzloranger
wontfix: Upgrading to GTKJ does not resolve this issue and my other attempt to hack …
12:14 Ticket #2646 (Vis buttons) closed by wmoore
12:11 Changeset [7689] by wmoore
Warning for viewing large maps in EMDB. Fixes #2644
12:11 Ticket #2644 (Handle big map viewing) closed by wmoore
fixed: (In [7689]) Warning for viewing large maps in EMDB. Fixes #2644
10:22 Changeset [7688] by jburel
fixing broken tests (cf. ticket #2067)
09:58 Changeset [7687] by jburel
Added tests related to the Admin service cf #2065
09:45 Changeset [7686] by bwzloranger
Fixes for findbugs errors (See #2596).

08/06/10:

15:53 Changeset [7685] by ajpatterson
Fixing broken reference to logger, now log #2596
15:02 Changeset [7684] by cblackburn
Merged r7681 to Trunk. Fixes #2647
15:02 Ticket #2647 (BUG: Python ParametersI reusing existing map objects) closed by cblackburn
fixed: (In [7684]) Merged r7681 to Trunk. Fixes #2647
14:59 Ticket #2643 (Get big files) closed by wmoore
fixed: (In [7683]) Downloading bigger files for EMDB. Fixes #2643
14:59 Changeset [7683] by wmoore
Downloading bigger files for EMDB. Fixes #2643
14:46 Changeset [7682] by ajpatterson
Should not suppress the unused log fields correctly, also renamed a few …
14:42 Changeset [7681] by cblackburn
Changed constructor and added tests. See #2647
14:00 Ticket #2648 (Image and plate names population issues) created by cxallan
Content from ome-users: …
13:19 Changeset [7680] by atarkowska
merging r7678
13:13 Changeset [7679] by ajpatterson
Another try at adding a filter to stop findbugs reporting an unused field …
13:12 Ticket #2542 (BUG: gateway 'settings' is not defined) closed by atarkowska
fixed: (In [7678]) this fixes #2542 and test.integration fixes, see #2067
13:12 Changeset [7678] by atarkowska
this fixes #2542 and test.integration fixes, see #2067
12:36 Changeset [7677] by ajpatterson
Adding a filter to stop findbugs reporting an unused field called 'log' in …
10:10 Ticket #2647 (BUG: Python ParametersI reusing existing map objects) created by cblackburn
If no argument is provided when creating multiple ParametersI objects in …
09:59 Changeset [7676] by bwzloranger
added gtkjfilechooser for #2532
02:02 Changeset [7675] by cneves-x
allowing explicit executable on omero web test and some cleanup.

08/05/10:

16:52 Ticket #2646 (Vis buttons) created by wmoore
Make the visualisation buttons look like buttons: - hover - icon for OA …
15:41 Ticket #2645 (BUG: Viewport) created by wmoore
Need to get view-port working in the EMDB entry page. Either fix loading …
13:50 Changeset [7674] by wmoore
Bug fix EMDB
12:55 Changeset [7673] by atarkowska
test.integration fixes, see #2067
12:34 Changeset [7672] by wmoore
EMDB data templates
11:11 Ticket #2644 (Handle big map viewing) created by wmoore
Don't try to show OA-viewer if the bit mask is going to be too big to …
10:09 Changeset [7671] by wmoore
EMDB publications page shows gifs for all entries. Some other work on file …
09:58 Changeset [7670] by atarkowska
test.integration fixes, see #2067

08/04/10:

17:30 Changeset [7669] by ajpatterson
No code changes, just some comments added.
17:17 Changeset [7668] by bwzloranger
Fixes for importer findbugs
16:47 Ticket #2641 (pdb display) closed by wmoore
fixed: (In [7667]) Viewing of pdb molecuels in OpenAstex? viewer. Fixes #2641
16:47 Changeset [7667] by wmoore
Viewing of pdb molecuels in OpenAstex? viewer. Fixes #2641
15:40 Changeset [7666] by cxallan
Attempting to move minidom Document import to the package scope. (See …
15:20 Changeset [7665] by bwzloranger
Fixes for importer findbugs
14:05 Changeset [7664] by atarkowska
still fix in r7663 no work, printing out parameters to debug
12:17 Changeset [7663] by atarkowska
test.integration.client_ctors fixed, see #2067
11:43 Changeset [7662] by wmoore
Fixing password and username for auto-login
11:40 Changeset [7661] by bwzloranger
Fixes for Importer findbugs
11:16 Ticket #2643 (Get big files) created by wmoore
Needed to view large bit masks and to download map files.
11:11 Ticket #2642 (Check all parts of every entry) created by wmoore
Make sure that all gifs, pdb, xml, bit etc are imported for each EMDB …
11:08 Ticket #2641 (pdb display) created by wmoore
Where pdb files are linked to a map, allow display in OA viewer with map.
09:53 Ticket #2605 (OA-Viewer bit masks) closed by wmoore
fixed: Fixed. r7644.
09:52 Ticket #2608 (Browse entries by publication) closed by wmoore
fixed: Done: r7637
09:49 Ticket #2607 (Deploy EMDB web to mage) closed by wmoore
fixed: Sym-linking happens automatically - mage running OK.
09:09 Changeset [7660] by cxallan
Fixing component specific TestNG package descriptions to avoid tests from …
09:06 Changeset [7659] by cxallan
Fixing counts being checked for unloaded exceptions and disabling the null …
08:33 Changeset [7658] by cxallan
Adding "manual" to the list of OmeroImporter component excluded test …
08:27 Changeset [7657] by cblackburn
Permissions.grant() is currently unimplemented and so …
08:21 Changeset [7656] by cxallan
Fixing ImporterConfigTest?.testDefaultGetsLoaded(). (See #2067)
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