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Task #2078 (closed)

Opened 14 years ago

Closed 14 years ago

BUG: Attenuation set incorrectly

Reported by: wmoore Owned by:
Priority: n.a. Milestone: Unscheduled
Component: n.a. Version: n.a.
Keywords: n.a. Cc: mlinkert
Resources: n.a. Referenced By: n.a.
References: n.a. Remaining Time: n.a.
Sprint: n.a.

Description

BioFormats currently sets the LightSourceRef?: Attenuation from Leica lif files with the 'Transmissivity' value.

see http://www.ome-xml.org/ticket/73

Change History (3)

comment:1 Changed 14 years ago by mlinkert

Attenuation population has been corrected in Bio-Formats r6076.

comment:2 Changed 14 years ago by wmoore

This doesn't seem to fix the problem. Looking at Martin's 'sample files.lif' image 'series 02 - XYZChBF' lasers are at 30%, 38%, 48%. So we need 'Attenuation' to be 0.7 etc. In ImageJ BF is still giving me

<LightSourceRef Attenuation="0.300006103888177" ID="LightSource:2:0"/>

comment:3 Changed 14 years ago by wmoore

  • Resolution set to fixed
  • Status changed from new to closed

Fixed with proper build from hudson.

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