Custom Query – OMERO.server – Trac

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Ticket	Summary	Status	Owner	Type	Priority	Milestone
#118	Hibernate session.merge() is updating non-changed entities.	assigned	jmoore	defect	blocker	3.0-Beta4
#1059	OutOfMemory exception thrown after 2 hours of importing	new	jmoore	defect	blocker	3.0-Beta4
#67	Unify Options (ome.util.builders) and QueryParameter (ome.services.query) APIs.	new	jmoore	story	critical	3.0-Beta4
#73	Patch trunk for MySQL & Oracle DB	new	jmoore	story	critical	GatherReqs
#115	OOM Errors	assigned	callan	story	critical	Unscheduled
#123	Importer Roadmap	assigned	callan	story	critical	Unscheduled
#179	System admin wants to set Class-level umasks	new	jmoore	task	critical	GatherReqs
#252	Validation umbrella	new	jmoore	story	critical	Unscheduled
#263	Unloaded collections/links are a pain	new	jmoore	defect	critical	GatherReqs
#300	Linear performance degradation with increasing number of groupexperimentermaps	new	jmoore	defect	critical	3.0-RC1
#328	Rework SecuritySystem	new	jmoore	story	critical	3.0-RC1
#334	Rework RenderingEngine	assigned	callan	story	critical	3.0-Beta4
#346	Merge needlessly/dangerously copies immutable fields.	new	jmoore	defect	critical	Blocked
#531	Stale jars can bring down the server.	new	jmoore	defect	critical	GatherReqs
#681	Add db.port and data.dir to setup script	new	jmoore	task	critical	Unscheduled
#704	Archived files	new	callan	defect	critical	Unscheduled
#800	OMERO properties rework for simplification and central administration	assigned	jmoore	story	critical	3.0-Beta4
#810	Importer: Import after failure	new	callan	task	critical	Unscheduled
#811	Importer: Freeze on import 1/1	new	callan	task	critical	Unscheduled
#834	JBoss PermGen Errors	assigned	callan	defect	critical
#860	Add ServerErrorEvent subsystem for notification of internal errors	new	jmoore	story	critical	3.0-Beta4
#917	External structured database similar to attachments	new	jmoore	story	critical	GatherReqs
#933	ACLs: more flexible security system	new	jmoore	story	critical	GatherReqs
#935	File-based export	new	jmoore	story	critical	3.0-Beta4
#937	Provide distro packages for server builds	new	jmoore	story	critical	3.0-Beta4
#938	Support image stitching	new	callan	story	critical	3.0-Beta4
#941	Add "trusted" capability to OMERO.fs	new	cblackburn	story	critical	3.0-Beta4
#974	Strange "narrowing proxy" warning in log	new	jmoore	defect	critical	3.0-Beta4
#975	Search.onlyType() can return different types	assigned	jmoore	defect	critical	3.0-Beta4
#1000	Thumbnail service: needed method	assigned	callan	task	critical	3.0-Beta4
#1029	Importing DV	new	brian	defect	critical	3.0-Beta3.1
#1030	importing file on Tape	new	brian	defect	critical	3.0-Beta3.1
#1078	Deadlocks in client when talking to Blitz	new	jmoore	defect	critical	3.0-Beta4
#1100	Importer: Dicom image (possible bug)	new	brain	defect	critical	3.0-Beta4
#1106	Blitz migration	new	jmoore	task	critical	3.0-Beta4
#5	Generate Testdata for Search	new	jmoore	story	major	Unscheduled
#9	Commandline Client for Search	new	jmoore	story	major	Unscheduled
#13	Search for Imagefields	new	jmoore	story	major	Unscheduled
#18	Import - Importer: Add in the priority import formats	assigned	callan	story	major	Unscheduled
#21	Search for Images based on the Instruments they were acquired with	new	jmoore	story	major	Unscheduled
#23	Find Images based on features of the Experiments	new	jmoore	story	major	Unscheduled
#24	Search for arbitrary objects	new	jmoore	story	major	Unscheduled
#25	Electronic Labbook	new	will	story	major	GatherReqs
#28	Externalize Util Package	assigned	callan	story	major	Future
#29	Acquisition Metadata	new	jburel	story	major	GatherReqs
#50	Support Multi-User Annotation	new	callan	story	major	Future
#77	Unspecified behavior if two QueryParameters with same name are entered.	assigned	jmoore	defect	major	3.0-RC1
#86	Create ITypes interface for meta-work with model.	assigned	jmoore	story	major	GatherReqs
#111	UpdateDataObject might should return initialized hierarchy collections.	new	jmoore	story	major	Unscheduled
#218	Rendering tests need an ImportFixture	assigned	callan	task	major	3.0-Beta4
#228	Permissions need a "C"ontainer flag.	new	jmoore	story	major	GatherReqs
#231	Sudo/root usage should produce an audit trail	new	jmoore	story	major	GatherReqs
#232	Session accessing code can disable read security	new	jmoore	defect	major	GatherReqs
#237	Have Hibernate events fire Spring events	assigned	jmoore	story	major	3.0-Beta4
#248	Binary services need a throttling mechanism	new	callan	story	major	Unscheduled
#307	Hibernate improperly handles Permissions components that are null	assigned	jmoore	defect	major	3.0-RC1
#350	Hibernate does not properly handle property-refs	new	jmoore	defect	major	Blocked
#356	CreatePojosFixture needs further improvements for being client & server-side compatible.	reopened	jmoore	defect	major	Unscheduled
#399	Examine adding an @Untaint annotation	new	jmoore	task	major	Unscheduled
#410	Thumbnail Service Triggering Dirty Session Exception (Document fix)	new	jmoore	defect	major	3.0-RC1
#441	Consider canWrite method on IAdmin.	new	jmoore	task	major	GatherReqs
#591	Impossible to correlate service log output	new	jmoore	defect	major	3.0-RC1
#600	possible threading issue on OMERO.importer on Linux	new	callan	defect	major	Unscheduled
#615	SystemTypes and null Permissions are poorly documented	new	jmoore	defect	major	Unscheduled
#633	OMERO.blitz / JBoss integration	new	jmoore	story	major	Future
#651	IPojos ot Other service: new methods	new	callan	task	major	Unscheduled
#670	Not setting the RGB channel correctly in the Importer	assigned	callan	defect	major
#717	Finish DBUpdateTask implementation	new	jmoore	task	major	GatherReqs
#732	Nulling of sequences in C++ isn't working.	new	jmoore	defect	major	3.0-Beta4
#773	Add simple KeepAliveThred in all blitz language bindings	new	jburel	task	major	Future
#799	Evaluate all exception handling	new	jmoore	task	major	3.0-RC1
#823	Multiple groupexperimentermaps between same group/user	new	jmoore	defect	major	3.0-Beta4
#831	Thumbnail Service: Compression level	assigned	callan	task	major	3.0-Beta4
#832	Large Zeiss-lms files taking "forever" to import	new	brain	defect	major
#838	Configure OMERO for SSL transport and document use	new	atarkowska	task	major	3.0-Beta4
#854	Rendering Settings Service Missing Return Values	assigned	callan	story	major
#861	Simplify creation of SystemTypes	new	jmoore	story	major	Unscheduled
#865	Add simplified Upload service	new	jmoore	story	major	3.0-Beta4
#866	Guarantee that build works without CPPUNIT and similar	new	jmoore	defect	major	3.0-Beta4
#876	Screen Plate Well model support	assigned	callan	task	major	3.0-Beta4
#888	Possible way to develope collaboration for Omero	assigned	atarkowska	story	major	3.0-Beta4
#911	Examine changing of password with one-time (session) password	new	jmoore	task	major	3.0-Beta4
#920	Message bus for integration with hardware	new	jmoore	story	major	GatherReqs
#925	OMERO.web Html customization	assigned	atarkowska	story	major	3.0-Beta4
#928	Scripting integration	new	donald	story	major	3.0-Beta4
#931	ProtocolEditor and Analysis parameters	new	will	story	major	GatherReqs
#936	OMERO-OMERO communication	new	jmoore	story	major	Future
#940	Add wildcard support to FullText Format parsing	new	jmoore	story	major	3.0-Beta4
#947	Scripting: ROI	new	donald	story	major	3.0-Beta4
#953	Can OMERO.fs provide the java.io.Reader interface?	new	cblackburn	story	major	3.0-Beta4
#956	Add notification support to OmeroSessions	new	jmoore	story	major	3.0-Beta4
#960	Blitz: OMERO.grid exception	new	josh	defect	major	Unscheduled
#964	Possible "corrupted" Lucene index after stale reader exception.	assigned	jmoore	defect	major	3.0-Beta4
#965	Permit piping stdout\|stderr to stdin of scripts	new	jmoore	story	major	3.0-Beta4
#976	Search.byAnnotatedWith() semantics need clearing up	new	jmoore	task	major	3.0-Beta4
#977	Need absolute PYTHONPATH for scripts	new	jmoore	defect	major	3.0-Beta4
#979	Add methods for listening to stdout/stderr on Process	new	jmoore	story	major	3.0-Beta4
#982	Develop our own ActiveServant container with eviction	assigned	jmoore	task	major	3.0-Beta4
#983	Implement processor registration	new	jmoore	story	major	3.0-Beta4
#985	Invalid SQL generated from HQL based on order of where clauses when using size()	new	jmoore	defect	major	3.0-Beta4

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