root/trunk/components/model/resources/mappings/acquisition.ome.xml
| Revision 3201, 25.2 kB (checked in by andrew, 4 weeks ago) |
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| 1 | <?xml version="1.0" encoding="UTF-8"?> |
| 2 | <!-- |
| 3 | #~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ |
| 4 | # |
| 5 | # $Id$ |
| 6 | # |
| 7 | # Copyright 2006 University of Dundee. All rights reserved. |
| 8 | # Use is subject to license terms supplied in LICENSE.txt |
| 9 | # |
| 10 | #~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ |
| 11 | --> |
| 12 | <types> |
| 13 | <!-- |
| 14 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ |
| 15 | Acquisition Context 1 |
| 16 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ |
| 17 | --> |
| 18 | <type id="ome.model.core.Image" named="true" described="true" annotated="true"> |
| 19 | <properties> |
| 20 | <!-- Acquisition Context 1 --> |
| 21 | <required name="acquisitionDate" type="timestamp"/> <!-- in the model this is creationDate but the DB already has a creation date for the object --> |
| 22 | <optional name="condition" type="ome.model.acquisition.ImagingEnvironment"/> |
| 23 | <optional name="objectiveSettings" type="ome.model.acquisition.ObjectiveSettings"> |
| 24 | <rule id="INS_OBJ_SYNCH" description="only if instrument defined"/> |
| 25 | </optional> |
| 26 | <optional name="setup" type="ome.model.acquisition.Instrument"/> |
| 27 | <optional name="position" type="ome.model.acquisition.StageLabel"/> |
| 28 | <optional name="context" type="ome.model.experiment.Experiment"/> |
| 29 | <optional name="defaultPixels" type="ome.model.core.Pixels"/> |
| 30 | <optional name="acquiredPixels" type="ome.model.core.Pixels"/> |
| 31 | <zeromany name="pixels" type="ome.model.core.Pixels" inverse="image" ordered="true"/> |
| 32 | <zeromany name="wellSamples" type="ome.model.screen.WellSample" inverse="image"/> |
| 33 | <!-- Containers --> |
| 34 | <parent name="categoryLinks" type="ome.model.containers.CategoryImageLink" target="ome.model.containers.Category"/> |
| 35 | <parent name="datasetLinks" type="ome.model.containers.DatasetImageLink" target="ome.model.containers.Dataset"/> |
| 36 | </properties> |
| 37 | </type> |
| 38 | <type id="ome.model.acquisition.ObjectiveSettings"> |
| 39 | <properties> |
| 40 | <optional name="correctionCollar" type="float"/> |
| 41 | <optional name="medium" type="ome.model.enums.Medium"/> |
| 42 | <optional name="refractiveIndex" type="float"/> |
| 43 | <required name="objective" type="ome.model.acquisition.Objective"/> |
| 44 | </properties> |
| 45 | </type> |
| 46 | <type id="ome.model.core.Pixels" annotated="true"> |
| 47 | <properties> |
| 48 | <!-- Acquisition Context 1 --> |
| 49 | <manyone name="image" type="ome.model.core.Image" ordered="true"/> |
| 50 | <optional name="relatedTo" type="ome.model.core.Pixels"/><!--TODO: not in model--> |
| 51 | <required name="pixelsType" type="ome.model.enums.PixelsType"/> |
| 52 | <required name="sizeX" type="int"/> |
| 53 | <required name="sizeY" type="int"/> |
| 54 | <required name="sizeZ" type="int"/> |
| 55 | <required name="sizeC" type="int"/> |
| 56 | <required name="sizeT" type="int"/> |
| 57 | <required name="sha1" type="string"/> |
| 58 | <required name="dimensionOrder" type="ome.model.enums.DimensionOrder"/> |
| 59 | <optional name="physicalSizeX" type="float"/> |
| 60 | <optional name="physicalSizeY" type="float"/> |
| 61 | <optional name="physicalSizeZ" type="float"/> |
| 62 | <optional name="waveStart" type="int"/> |
| 63 | <optional name="waveIncrement" type="int"/> |
| 64 | <optional name="timeIncrement" type="float"/> |
| 65 | <optional name="methodology" type="string"/> |
| 66 | <onemany name="planeInfo" type="ome.model.core.PlaneInfo" inverse="pixels"> |
| 67 | <rule id="PLANE_INFO_CARDINALITY" description="0|sizez*sizey*sizec"/> |
| 68 | </onemany> |
| 69 | <!-- TODO: storage --> |
| 70 | <parent name="pixelsFileMaps" type="ome.model.core.PixelsOriginalFileMap" target="ome.model.core.OriginalFile"/> |
| 71 | <!-- Acquisition Context 2 --> |
| 72 | <onemany name="channels" type="ome.model.core.Channel" inverse="pixels" ordered="true"> |
| 73 | <rule id="CHANNEL_CARDINALITY" description="Must be sizeC channels"/> |
| 74 | </onemany> |
| 75 | <!--Display Settings 1--> |
| 76 | <zeromany name="settings" type="ome.model.display.RenderingDef" inverse="pixels"/> |
| 77 | <zeromany name="thumbnails" type="ome.model.display.Thumbnail" inverse="pixels"/> |
| 78 | </properties> |
| 79 | </type> |
| 80 | <link id="ome.model.core.PixelsOriginalFileMap"> |
| 81 | <properties> |
| 82 | <from_parent type="ome.model.core.OriginalFile"/> |
| 83 | <to_child type="ome.model.core.Pixels"/> |
| 84 | </properties> |
| 85 | </link> |
| 86 | <type id="ome.model.core.OriginalFile" named="true" annotated="true"> |
| 87 | <properties> |
| 88 | <child name="pixelsFileMaps" type="ome.model.core.PixelsOriginalFileMap" target="ome.model.core.Pixels"/> |
| 89 | <required name="path" type="string"/> |
| 90 | <required name="size" type="long"/> |
| 91 | <optional name="atime" type="timestamp"/> |
| 92 | <optional name="mtime" type="timestamp"/> |
| 93 | <optional name="ctime" type="timestamp"/> |
| 94 | <required name="sha1" type="string"/> |
| 95 | <required name="format" type="ome.model.enums.Format"/> |
| 96 | </properties> |
| 97 | </type> |
| 98 | <type id="ome.model.core.PlaneInfo" annotated="true"> |
| 99 | <properties> |
| 100 | <manyone name="pixels" type="ome.model.core.Pixels"/> |
| 101 | <required name="theZ" type="int"/> |
| 102 | <required name="theC" type="int"/> |
| 103 | <required name="theT" type="int"/> |
| 104 | <optional name="deltaT" type="float"/> |
| 105 | <optional name="positionX" type="float"/> |
| 106 | <optional name="positionY" type="float"/> |
| 107 | <optional name="positionZ" type="float"/> |
| 108 | <optional name="exposureTime" type="float"/> |
| 109 | <!-- TODO: see mac notes --> |
| 110 | </properties> |
| 111 | </type> |
| 112 | <type id="ome.model.experiment.Experiment" described="true"> |
| 113 | <properties> |
| 114 | <required name="type" type="ome.model.enums.ExperimentType"/> |
| 115 | <zeromany name="microbeamManipulation" type="ome.model.experiment.MicrobeamManipulation" inverse="experiment"/> |
| 116 | </properties> |
| 117 | </type> |
| 118 | <type id="ome.model.experiment.MicrobeamManipulation" described="true"> |
| 119 | <properties> |
| 120 | <required name="experimenter" type="ome.model.meta.Experimenter"/> |
| 121 | <required name="type" type="ome.model.enums.MicrobeamManipulationType"/> |
| 122 | <onemany name="roi" type="ome.model.display.Roi" inverse="microbeamManipulation"/> |
| 123 | <manyone name="experiment" type="ome.model.experiment.Experiment"/> |
| 124 | </properties> |
| 125 | </type> |
| 126 | <type id="ome.model.acquisition.StageLabel" named="true"> |
| 127 | <properties> |
| 128 | <optional name="positionX" type="float"/> |
| 129 | <optional name="positionY" type="float"/> |
| 130 | <optional name="positionZ" type="float"/> |
| 131 | </properties> |
| 132 | </type> |
| 133 | <type id="ome.model.acquisition.ImagingEnvironment"> |
| 134 | <properties> |
| 135 | <optional name="temperature" type="float"/> |
| 136 | <optional name="airPressure" type="float"/> |
| 137 | <optional name="humidity" type="float"> |
| 138 | <rule id="HUMIDITY_RANGE" type="range" description="0-1"/> |
| 139 | </optional> |
| 140 | <optional name="co2percent" type="float"> |
| 141 | <rule id="CO2_RANGE" type="range" description="0-1"/> |
| 142 | </optional> |
| 143 | </properties> |
| 144 | </type> |
| 145 | <!-- |
| 146 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ |
| 147 | Acquisition Context 2 |
| 148 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ |
| 149 | --> |
| 150 | <type id="ome.model.core.Channel" annotated="true"> |
| 151 | <properties> |
| 152 | <optional name="statsInfo" type="ome.model.stats.StatsInfo"><!--TODO: not in model--> |
| 153 | <rule id="STATSINFO_DEP" type="dependency" description="depends on pixelType"/> |
| 154 | <!--TODO: depends how?--> |
| 155 | </optional> |
| 156 | <optional name="red" type="int"> |
| 157 | <rule id="COLOR_REQ" type="conditionalNull" description="color must exist if PIType == RGB|ARGB|CMYK|HSV"/> |
| 158 | <rule id="COLOR_RANGE" type="range" description="rule0_255 all values between 0-255"/> |
| 159 | </optional> |
| 160 | <optional name="green" type="int"> |
| 161 | <rule id="COLOR_REQ" type="conditionalNull" description="color must exist if PIType == RGB|ARGB|CMYK|HSV"/> |
| 162 | <rule id="COLOR_RANGE" type="range" description="rule0_255 all values between 0-255"/> |
| 163 | </optional> |
| 164 | <optional name="blue" type="int"> |
| 165 | <rule id="COLOR_REQ" type="conditionalNull" description="color must exist if PIType == RGB|ARGB|CMYK|HSV"/> |
| 166 | <rule id="COLOR_RANGE" type="range" description="rule0_255 all values between 0-255"/> |
| 167 | </optional> |
| 168 | <optional name="alpha" type="int"> |
| 169 | <rule id="COLOR_REQ" type="conditionalNull" description="color must exist if PIType == RGB|ARGB|CMYK|HSV"/> |
| 170 | <rule id="COLOR_RANGE" type="range" description="rule0_255 all values between 0-255"/> |
| 171 | </optional> |
| 172 | <optional name="logicalChannel" type="ome.model.core.LogicalChannel"/> |
| 173 | <manyone name="pixels" type="ome.model.core.Pixels" ordered="true"/> |
| 174 | </properties> |
| 175 | </type> |
| 176 | <type id="ome.model.core.LogicalChannel"> |
| 177 | <properties> |
| 178 | <optional name="name" type="string"/> |
| 179 | <optional name="pinHoleSize" type="float"/> |
| 180 | <optional name="illumination" type="ome.model.enums.Illumination"/> |
| 181 | <optional name="contrastMethod" type="ome.model.enums.ContrastMethod"/> |
| 182 | <optional name="excitationWave" type="int"/> |
| 183 | <optional name="emissionWave" type="int"/> |
| 184 | <optional name="fluor" type="string"/> |
| 185 | <optional name="ndFilter" type="float"/> |
| 186 | <optional name="otf" type="ome.model.acquisition.OTF"/> |
| 187 | <optional name="detectorSettings" type="ome.model.acquisition.DetectorSettings"> |
| 188 | <rule id="DETECTOR_SETTINGS_REQ" type="conditionalNull" description="if defined, the instrument must be defined"/> |
| 189 | </optional> |
| 190 | <optional name="lightSourceSettings" type="ome.model.acquisition.LightSettings"/> |
| 191 | <optional name="filterSet" type="ome.model.acquisition.FilterSet"/> |
| 192 | <optional name="secondaryEmissionFilter" type="ome.model.acquisition.Filter"/> |
| 193 | <optional name="secondaryExcitationFilter" type="ome.model.acquisition.Filter"/> |
| 194 | <optional name="samplesPerPixel" type="int"/> |
| 195 | <optional name="photometricInterpretation" type="ome.model.enums.PhotometricInterpretation"/> |
| 196 | <optional name="mode" type="ome.model.enums.AcquisitionMode"/> |
| 197 | <optional name="pockelCellSetting" type="int"/> |
| 198 | </properties> |
| 199 | </type> |
| 200 | <type id="ome.model.stats.StatsInfo"><!--TODO: not in model--> |
| 201 | <properties> |
| 202 | <required name="globalMin" type="double"/><!--TODO: not in model--> |
| 203 | <required name="globalMax" type="double"/><!--TODO: not in model--> |
| 204 | </properties> |
| 205 | </type> |
| 206 | <type id="ome.model.acquisition.DetectorSettings"><!-- in model as DetectorRef--> |
| 207 | <properties> |
| 208 | <optional name="voltage" type="float"/> |
| 209 | <optional name="gain" type="float"/> |
| 210 | <optional name="offsetValue" type="float"/> |
| 211 | <optional name="readOutRate" type="float"/> |
| 212 | <optional name="binning" type="ome.model.enums.Binning"/> |
| 213 | <required name="detector" type="ome.model.acquisition.Detector"/> |
| 214 | </properties> |
| 215 | </type> |
| 216 | <type id="ome.model.acquisition.OTF"> |
| 217 | <properties> |
| 218 | <required name="sizeX" type="int"/> |
| 219 | <required name="sizeY" type="int"/> |
| 220 | <required name="opticalAxisAvg" type="boolean"/> |
| 221 | <required name="pixelsType" type="ome.model.enums.PixelsType"/> |
| 222 | <required name="path" type="string"/><!-- TODO: no FK? --><!--TODO: not in model--> |
| 223 | <!--TODO: BinaryFile in model - is this path?--> |
| 224 | <optional name="filterSet" type="ome.model.acquisition.FilterSet"/> |
| 225 | <required name="objective" type="ome.model.acquisition.Objective"/> |
| 226 | <!-- TODO: rule to check image_link_objective ? --> |
| 227 | <manyone name="instrument" type="ome.model.acquisition.Instrument"/> |
| 228 | </properties> |
| 229 | </type> |
| 230 | <type id="ome.model.acquisition.LightSettings"> |
| 231 | <!-- in model as LightSourceRef--> |
| 232 | <properties> |
| 233 | <optional name="attenuation" type="float"> |
| 234 | <rule id="ATTENUATION_RANGE" type="range" description="0-1"/> |
| 235 | </optional> |
| 236 | <optional name="wavelength" type="int"/> |
| 237 | <required name="lightSource" type="ome.model.acquisition.LightSource"/> |
| 238 | </properties> |
| 239 | </type> |
| 240 | <!-- ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ |
| 241 | Acquisition Context 3 |
| 242 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ --> |
| 243 | <abstract id="ome.model.acquisition.LightSource" manufactured="true"> |
| 244 | <properties> |
| 245 | <optional name="manufacturer" type="string"/> |
| 246 | <optional name="model" type="string"/> |
| 247 | <optional name="power" type="float"/> |
| 248 | <optional name="serialNumber" type="string"/> |
| 249 | <manyone name="instrument" type="ome.model.acquisition.Instrument"/> |
| 250 | </properties> |
| 251 | </abstract> |
| 252 | <type id="ome.model.acquisition.Arc" superclass="ome.model.acquisition.LightSource"> |
| 253 | <properties> |
| 254 | <required name="type" type="ome.model.enums.ArcType"/> |
| 255 | </properties> |
| 256 | </type> |
| 257 | <type id="ome.model.acquisition.Filament" superclass="ome.model.acquisition.LightSource"> |
| 258 | <properties> |
| 259 | <required name="type" type="ome.model.enums.FilamentType"/> |
| 260 | </properties> |
| 261 | </type> |
| 262 | <type id="ome.model.acquisition.Laser" superclass="ome.model.acquisition.LightSource"> |
| 263 | <properties> |
| 264 | <required name="type" type="ome.model.enums.LaserType"/> |
| 265 | <required name="laserMedium" type="ome.model.enums.LaserMedium"/> |
| 266 | <optional name="frequencyMultiplication" type="int"/> |
| 267 | <optional name="tuneable" type="boolean"/> |
| 268 | <optional name="pulse" type="ome.model.enums.Pulse"/> |
| 269 | <optional name="wavelength" type="int"/> |
| 270 | <optional name="pockelCell" type="boolean"/> |
| 271 | <optional name="pump" type="ome.model.acquisition.LightSource"/> |
| 272 | <optional name="repetitionRate" type="float"/> |
| 273 | </properties> |
| 274 | </type> |
| 275 | <type id="ome.model.acquisition.LightEmittingDiode" superclass="ome.model.acquisition.LightSource"> |
| 276 | <properties> |
| 277 | </properties> |
| 278 | </type> |
| 279 | <!-- |
| 280 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ |
| 281 | Acquisition Context 4 |
| 282 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ |
| 283 | --> |
| 284 | <type id="ome.model.acquisition.Detector" manufactured="true"> |
| 285 | <properties> |
| 286 | <optional name="manufacturer" type="string"/> |
| 287 | <optional name="model" type="string"/> |
| 288 | <optional name="serialNumber" type="string"/> |
| 289 | <optional name="voltage" type="float"/> |
| 290 | <optional name="gain" type="float"/> |
| 291 | <optional name="offsetValue" type="float"/> |
| 292 | <optional name="zoom" type="float"/> |
| 293 | <optional name="amplificationGain" type="float"/> |
| 294 | <required name="type" type="ome.model.enums.DetectorType"/> |
| 295 | <manyone name="instrument" type="ome.model.acquisition.Instrument"/> |
| 296 | </properties> |
| 297 | </type> |
| 298 | <type id="ome.model.acquisition.Microscope" manufactured="true"> |
| 299 | <properties> |
| 300 | <optional name="manufacturer" type="string"/> |
| 301 | <optional name="model" type="string"/> |
| 302 | <optional name="serialNumber" type="string"/> |
| 303 | <required name="type" type="ome.model.enums.MicroscopeType"/> |
| 304 | </properties> |
| 305 | </type> |
| 306 | <type id="ome.model.acquisition.Objective" manufactured="true"> |
| 307 | <properties> |
| 308 | <optional name="manufacturer" type="string"/> |
| 309 | <optional name="model" type="string"/> |
| 310 | <optional name="serialNumber" type="string"/> |
| 311 | <optional name="nominalMagnification" type="int"/> |
| 312 | <optional name="calibratedMagnification" type="float"/> |
| 313 | <optional name="lensNA" type="float"/> |
| 314 | <optional name="immersion" type="ome.model.enums.Immersion"/> |
| 315 | <optional name="correction" type="ome.model.enums.Correction"/><!-- called Correction in model --> |
| 316 | <optional name="workingDistance" type="float"/> |
| 317 | <optional name="iris" type="boolean"/> |
| 318 | <manyone name="instrument" type="ome.model.acquisition.Instrument"/> |
| 319 | </properties> |
| 320 | </type> |
| 321 | <type id="ome.model.acquisition.Instrument"> |
| 322 | <properties> |
| 323 | <optional name="microscope" type="ome.model.acquisition.Microscope"/> |
| 324 | <zeromany name="detector" type="ome.model.acquisition.Detector" inverse="instrument"/> |
| 325 | <zeromany name="objective" type="ome.model.acquisition.Objective" inverse="instrument"/> |
| 326 | <zeromany name="lightSource" type="ome.model.acquisition.LightSource" inverse="instrument"/> |
| 327 | <zeromany name="filter" type="ome.model.acquisition.Filter" inverse="instrument"/> |
| 328 | <zeromany name="dichroic" type="ome.model.acquisition.Dichroic" inverse="instrument"/> |
| 329 | <zeromany name="filterSet" type="ome.model.acquisition.FilterSet" inverse="instrument"/> |
| 330 | <zeromany name="otf" type="ome.model.acquisition.OTF" inverse="instrument"/> |
| 331 | </properties> |
| 332 | </type> |
| 333 | <!-- |
| 334 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ |
| 335 | Acquisition Context 5 |
| 336 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ |
| 337 | --> |
| 338 | <type id="ome.model.acquisition.Filter"> |
| 339 | <properties> |
| 340 | <optional name="manufacturer" type="string"/> |
| 341 | <optional name="model" type="string"/> |
| 342 | <optional name="lotNumber" type="string"/> |
| 343 | <optional name="filterWheel" type="string"/> |
| 344 | <optional name="type" type="ome.model.enums.FilterType"/> |
| 345 | <optional name="transmittanceRange" type="ome.model.acquisition.TransmittanceRange"/> |
| 346 | <manyone name="instrument" type="ome.model.acquisition.Instrument"/> |
| 347 | </properties> |
| 348 | </type> |
| 349 | <type id="ome.model.acquisition.FilterSet" manufactured="true"> |
| 350 | <properties> |
| 351 | <optional name="manufacturer" type="string"/> |
| 352 | <optional name="model" type="string"/> |
| 353 | <optional name="lotNumber" type="string"/> |
| 354 | <optional name="exFilter" type="ome.model.acquisition.Filter"/> |
| 355 | <optional name="emFilter" type="ome.model.acquisition.Filter"/> |
| 356 | <optional name="dichroic" type="ome.model.acquisition.Dichroic"/> |
| 357 | <manyone name="instrument" type="ome.model.acquisition.Instrument"/> |
| 358 | </properties> |
| 359 | </type> |
| 360 | <type id="ome.model.acquisition.Dichroic"> |
| 361 | <properties> |
| 362 | <optional name="manufacturer" type="string"/> |
| 363 | <optional name="model" type="string"/> |
| 364 | <optional name="lotNumber" type="string"/> |
| 365 | <manyone name="instrument" type="ome.model.acquisition.Instrument"/> |
| 366 | </properties> |
| 367 | </type> |
| 368 | <type id="ome.model.acquisition.TransmittanceRange"> |
| 369 | <properties> |
| 370 | <optional name="cutIn" type="int"/> |
| 371 | <optional name="cutOut" type="int"/> |
| 372 | <optional name="cutInTolerance" type="int"/> |
| 373 | <optional name="cutOutTolerance" type="int"/> |
| 374 | <optional name="transmittance" type="float"> |
| 375 | <rule id="TRANSMITTANCE_RANGE" type="range" description="0-1"/> |
| 376 | </optional> |
| 377 | </properties> |
| 378 | </type> |
| 379 | <!-- |
| 380 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ |
| 381 | Acquisition Context 1 Enumerations |
| 382 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ |
| 383 | --> |
| 384 | <!-- ExperimentType --> |
| 385 | <enum id="ome.model.enums.ExperimentType"> |
| 386 | <entry name="FP"/> |
| 387 | <entry name="FRET"/> |
| 388 | <entry name="TimeLapse"/> |
| 389 | <entry name="FourDPlus"/> |
| 390 | <entry name="Screen"/> |
| 391 | <entry name="Immunocytochemistry"/> |
| 392 | <entry name="Immunofluorescence"/> |
| 393 | <entry name="FISH"/> |
| 394 | <entry name="Electrophysiology"/> |
| 395 | <entry name="IonImaging"/> |
| 396 | <entry name="Colocalization"/> |
| 397 | <entry name="PGIDocumentation"/> |
| 398 | <entry name="FluorescenceLifetime"/> |
| 399 | <entry name="SpectralImaging"/> |
| 400 | <entry name="Photobleaching"/> |
| 401 | <entry name="Other"/> |
| 402 | </enum> |
| 403 | <enum id="ome.model.enums.MicrobeamManipulationType"> |
| 404 | <entry name="FRAP"/> |
| 405 | <entry name="Photoablation"/> |
| 406 | <entry name="Photoactivation"/> |
| 407 | <entry name="Uncaging"/> |
| 408 | <entry name="OpticalTrapping"/> |
| 409 | <entry name="Other"/> |
| 410 | </enum> |
| 411 | <!-- Objective Settings Entity --> |
| 412 | <enum id="ome.model.enums.Medium"> |
| 413 | <entry name="Air"/> |
| 414 | <entry name="Oil"/> |
| 415 | <entry name="Water"/> |
| 416 | <entry name="Glycerol"/> |
| 417 | </enum> |
| 418 | <!-- Microscope Entity --> |
| 419 | <enum id="ome.model.enums.MicroscopeType"> |
| 420 | <entry name="Upright"/> |
| 421 | <entry name="Inverted"/> |
| 422 | <entry name="Dissection"/> |
| 423 | <entry name="Electrophysiology"/> |
| 424 | <entry name="Unknown"/> |
| 425 | </enum> |
| 426 | <!-- Object Entity --> |
| 427 | <enum id="ome.model.enums.Immersion"> |
| 428 | <entry name="Oil"/> |
| 429 | <entry name="Water"/> |
| 430 | <entry name="WaterDipping"/> |
| 431 | <entry name="Air"/> |
| 432 | <entry name="Multi"/> |
| 433 | <entry name="Glycerol"/> |
| 434 | <entry name="Other"/> |
| 435 | <entry name="Unknown"/> |
| 436 | </enum> |
| 437 | |
| 438 | <enum id="ome.model.enums.Correction"> |
| 439 | <entry name="Unknown"/> |
| 440 | <entry name="Other"/> |
| 441 | <entry name="UV"/> |
| 442 | <entry name="PlanApo"/> |
| 443 | <entry name="PlanFluor"/> |
| 444 | <entry name="SuperFluor"/> |
| 445 | <entry name="VioletCorrected"/> |
| 446 | <entry name="Achro"/> |
| 447 | <entry name="Achromat"/> |
| 448 | <entry name="Fluor"/> |
| 449 | <entry name="Fl"/> |
| 450 | <entry name="Fluar"/> |
| 451 | <entry name="Neofluar"/> |
| 452 | <entry name="Fluotar"/> |
| 453 | <entry name="Apo"/> |
| 454 | </enum> |
| 455 | |
| 456 | <!-- OriginalFile Entity --> |
| 457 | <enum id="ome.model.enums.Format"><!-- not in model but used by OriginalFile--> |
| 458 | <entry name="PNG"/> |
| 459 | <entry name="JPEG"/> |
| 460 | <entry name="PGM"/> |
| 461 | <entry name="Fits"/> |
| 462 | <entry name="GIF"/> |
| 463 | <entry name="BMP"/> |
| 464 | <entry name="Dicom"/> |
| 465 | <entry name="BioRad"/> |
| 466 | <entry name="IPLab"/> |
| 467 | <entry name="Deltavision"/> |
| 468 | <entry name="MRC"/> |
| 469 | <entry name="Gatan"/> |
| 470 | <entry name="Imaris"/> |
| 471 | <entry name="OpenlabRaw"/> |
| 472 | <entry name="OMEXML"/> |
| 473 | <entry name="LIF"/> |
| 474 | <entry name="AVI"/> |
| 475 | <entry name="QT"/> |
| 476 | <entry name="Pict"/> |
| 477 | <entry name="SDT"/> |
| 478 | <entry name="EPS"/> |
| 479 | <entry name="Slidebook"/> |
| 480 | <entry name="Alicona"/> |
| 481 | <entry name="MNG"/> |
| 482 | <entry name="NRRD"/> |
| 483 | <entry name="Khoros"/> |
| 484 | <entry name="Visitech"/> |
| 485 | <entry name="LIM"/> |
| 486 | <entry name="PSD"/> |
| 487 | <entry name="InCell"/> |
| 488 | <entry name="ICS"/> |
| 489 | <entry name="PerkinElmer"/> |
| 490 | <entry name="TCS"/> |
| 491 | <entry name="FV1000"/> |
| 492 | <entry name="ZeissZVI"/> |
| 493 | <entry name="IPW"/> |
| 494 | <entry name="LegacyND2"/> |
| 495 | <entry name="ND2"/> |
| 496 | <entry name="PCI"/> |
| 497 | <entry name="ImarisHDF"/> |
| 498 | <entry name="Metamorph"/> |
| 499 | <entry name="ZeissLSM"/> |
| 500 | <entry name="SEQ"/> |
| 501 | <entry name="Gel"/> |
| 502 | <entry name="ImarisTiff"/> |
| 503 | <entry name="Flex"/> |
| 504 | <entry name="SVS"/> |
| 505 | <entry name="Leica"/> |
| 506 | <entry name="Nikon"/> |
| 507 | <entry name="Fluoview"/> |
| 508 | <entry name="Prairie"/> |
| 509 | <entry name="Micromanager"/> |
| 510 | <entry name="ImprovisionTiff"/> |
| 511 | <entry name="OMETiff"/> |
| 512 | <entry name="MetamorphTiff"/> |
| 513 | <entry name="Tiff"/> |
| 514 | <entry name="Openlab"/> |
| 515 | <entry name="text/csv"/> |
| 516 | <entry name="text/plain"/> |
| 517 | <entry name="text/xml"/> |
| 518 | <entry name="text/html"/> |
| 519 | <entry name="text/rtf"/> |
| 520 | <entry name="text/x-python"/> |
| 521 | <entry name="application/pdf"/> |
| 522 | <entry name="application/ms-excel"/> |
| 523 | <entry name="application/ms-powerpoint"/> |
| 524 | <entry name="application/ms-word"/> |
| 525 | </enum> |
| 526 | <!-- Pixels Entity --> |
| 527 | <enum id="ome.model.enums.DimensionOrder"> |
| 528 | <entry name="XYZCT"/> |
| 529 | <entry name="XYZTC"/> |
| 530 | <entry name="XYCTZ"/> |
| 531 | <entry name="XYCZT"/> |
| 532 | <entry name="XYTCZ"/> |
| 533 | <entry name="XYTZC"/> |
| 534 | </enum> |
| 535 | <enum id="ome.model.enums.PixelsType"> |
| 536 | <entry name="int8" |