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Task #9933 (closed)

Opened 11 years ago

Closed 8 years ago

Bug: some Slidebook files do not open at all

Reported by:	mlinkert	Owned by:
Priority:	major	Milestone:	Unscheduled
Component:	Bio-Formats	Version:	4.4.8
Keywords:	SlidebookReader, external, our-fault	Cc:	nikolaus.ehrenfeuchter@…, s.loynton@…, alexia.ferrand@…, kai.schleicher@…
Resources:	n.a.	Referenced By:	n.a.
References:	n.a.	Remaining Time:	n.a.
Sprint:	n.a.

Description

See the files in slidebook/alexia/, which produce something like:

Exception in thread "main" java.lang.ArrayIndexOutOfBoundsException: Array index out of range: 2
	at java.util.Vector.get(Vector.java:694)
	at loci.formats.in.SlidebookReader.initFile(SlidebookReader.java:1167)
	at loci.formats.FormatReader.setId(FormatReader.java:1234)
	at loci.formats.ImageReader.setId(ImageReader.java:742)
	at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:542)
	at loci.formats.tools.ImageInfo.testRead(ImageInfo.java:1003)
	at loci.formats.tools.ImageInfo.main(ImageInfo.java:1048)

References

Change History (7)

comment:1 Changed 11 years ago by mlinkert

comment:2 Changed 11 years ago by mlinkert

comment:3 Changed 11 years ago by mlinkert

comment:4 Changed 11 years ago by mlinkert

Cc kai.schleicher@… added
Version set to 4.4.8

comment:5 Changed 8 years ago by jamoore

Milestone changed from 5.x to Unscheduled

comment:6 Changed 8 years ago by mlinkert

Keywords external our-fault added
Owner mlinkert deleted

Expect this to take substantial time given the state of Slidebook support. Closing as wontfix or needsfunding would be OK with me.

comment:7 Changed 8 years ago by sbesson

Resolution set to wontfix
Status changed from new to closed

As of Bio-Formats 5.2.0, recent Slidebook files can be opened on all platforms using the 3i Slidebook reader. As this reader is completely externalized from Bio-Formats and fully maintained by 3i (see https://www.intelligent-imaging.com/techanswers.php#SLDinFiji), closing all these tickets with wontfix.

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