Warning: Can't synchronize with repository "(default)" (/home/git/ome.git does not appear to be a Git repository.). Look in the Trac log for more information.
Notice: In order to edit this ticket you need to be either: a Product Owner, The owner or the reporter of the ticket, or, in case of a Task not yet assigned, a team_member"

Task #9807 (closed)

Opened 12 years ago

Closed 12 years ago

leica-ome: MDB file treated as Zeiss-LSM

Reported by: rleigh Owned by: mlinkert
Priority: minor Milestone: OMERO-4.4.7
Component: Bio-Formats Version: n.a.
Keywords: FS Cc:
Resources: n.a. Referenced By: n.a.
References: n.a. Remaining Time: n.a.
Sprint: n.a.

Description

Calling setId on:

from_skyking/leica-ome/harri/experiment--2011_04_20_09_15_50/MFGTMP-PC_111018140003/MFGTMP-PC_111018140003.MDB

This appears to be treated as a Zeiss LSM MDB file, which doesn't look quite right to me. Should this file be part of the used files list and imported along with the other files here?

Change History (1)

comment:1 Changed 12 years ago by mlinkert

  • Resolution set to fixed
  • Status changed from new to closed

That dataset was not placed in the correct directory; it has been moved to from_skyking/cellomics/harri/.

The Zeiss LSM reader should not be picking up that .mdb file, which has been fixed here:

​https://github.com/openmicroscopy/bioformats/pull/201

The .mdb file should eventually be associated with the remaining files in that directory, as described in #7092.

Note: See TracTickets for help on using tickets. You may also have a look at Agilo extensions to the ticket.

1.3.13-PRO © 2008-2011 Agilo Software all rights reserved (this page was served in: 0.68628 sec.)

© 2000-2014 University of Dundee & Open Microscopy Environment. Creative Commons Attribution 3.0 Unported License
OME source code is available under the GNU General public license or through commercial license from Glencoe Software

We're Hiring!