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Task #9681 (closed)

Opened 12 years ago

Closed 12 years ago

Bug: .nd2 files from partial acquisitions cannot be read

Reported by:	mlinkert	Owned by:	mlinkert
Priority:	major	Milestone:	OMERO-4.4.7
Component:	Bio-Formats	Version:	n.a.
Keywords:	n.a.	Cc:	Michael.Cammer@…
Resources:	n.a.	Referenced By:	n.a.
References:	n.a.	Remaining Time:	n.a.
Sprint:	2012-10-23 (1)

Description

See file in nd2/michael/stopped-acquisition/, which produces this stack trace:

Exception in thread "main" java.lang.ArrayIndexOutOfBoundsException: 1086
	at loci.formats.in.NativeND2Reader.initFile(NativeND2Reader.java:516)
	at loci.formats.FormatReader.setId(FormatReader.java:1178)
	at loci.formats.DelegateReader.setId(DelegateReader.java:259)
	at loci.formats.ImageReader.setId(ImageReader.java:727)
	at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:529)
	at loci.formats.tools.ImageInfo.testRead(ImageInfo.java:988)
	at loci.formats.tools.ImageInfo.main(ImageInfo.java:1031)

References

Change History (2)

comment:1 Changed 12 years ago by mlinkert

Sprint set to 2012-10-23 (1)

comment:2 Changed 12 years ago by mlinkert

Resolution set to fixed
Status changed from new to closed

Fixed with: https://github.com/melissalinkert/bioformats/commit/848b3ec3cc39a6d283fd9bcae349c623a3af9ad0

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