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Task #7331 (closed)

Opened 12 years ago

Closed 12 years ago

Bug: Issue parsing MRC metadata when physical dimensions are computed as zero

Reported by:	cxallan	Owned by:	cxallan
Priority:	critical	Milestone:	OMERO-4.4
Component:	Bio-Formats	Version:	n.a.
Keywords:	n.a.	Cc:	mlinkert
Resources:	n.a.	Referenced By:	n.a.
References:	n.a.	Remaining Time:	0.0d
Sprint:	2011-11-29 (3)

Description

When MRC physical dimensions are computed as being of zero across either X, Y or Z an exception is thrown:

Exception in thread "main" java.lang.IllegalArgumentException: 0.0 must not be null and positive.
	at ome.xml.model.primitives.PositiveFloat.<init>(PositiveFloat.java:41)
	at loci.formats.in.MRCReader.initFile(MRCReader.java:286)
	at loci.formats.FormatReader.setId(FormatReader.java:1080)
	at loci.formats.ImageReader.setId(ImageReader.java:682)
	at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:492)
	at loci.formats.tools.ImageInfo.testRead(ImageInfo.java:956)
	at loci.formats.tools.ImageInfo.main(ImageInfo.java:989)

References

Change History (3)

comment:1 Changed 12 years ago by cxallan

Status changed from new to accepted

comment:2 Changed 12 years ago by cxallan

Owner changed from mlinkert-x to cxallan

comment:3 Changed 12 years ago by cxallan

Cc mlinkert-x added
Remaining Time changed from 0.25 to 0
Resolution set to fixed
Status changed from accepted to closed

Code for review on my Github branch:

https://github.com/chris-allan/bioformats/tree/bug/7331

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