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Changes between Version 1 and Version 3 of Ticket #5599


Ignore:
Timestamp:
06/06/11 09:43:07 (13 years ago)
Author:
jmoore
Comment:
java.lang.RuntimeException: omero.ApiUsageException
    serverStackTrace = "ome.conditions.ApiUsageException: Missing reference handler for omero.model.OriginalFile:2(ome.model.core.OriginalFile:Hash_20227590) --> Plate:0(ome.model.screen.Plate:Hash_25169139) reference.
                        	at ome.formats.OMEROMetadataStore.updateReferences(OMEROMetadataStore.java:539)
                        	at ome.services.blitz.impl.MetadataStoreI$5.doWork(MetadataStoreI.java:235)
                        	at sun.reflect.GeneratedMethodAccessor211.invoke(Unknown Source)
                        	at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
                        	at java.lang.reflect.Method.invoke(Unknown Source)
                        	at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307)
                        	at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183)
                        	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150)
                        	at ome.services.util.Executor$Impl$Interceptor.invoke(Executor.java:439)
                        	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
                        	at ome.security.basic.EventHandler.invoke(EventHandler.java:150)
                        	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
                        	at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:111)
                        	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
                        	at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108)
                        	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
                        	at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:231)
                        	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
                        	at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:111)
                        	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
                        	at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202)
                        	at $Proxy64.doWork(Unknown Source)
                        	at ome.services.util.Executor$Impl.execute(Executor.java:369)
                        	at ome.services.throttling.Adapter.run(Adapter.java:51)
                        	at ome.services.throttling.InThreadThrottlingStrategy.runnableCall(InThreadThrottlingStrategy.java:89)
                        	at ome.services.blitz.impl.AbstractAmdServant.runnableCall(AbstractAmdServant.java:150)
                        	at ome.services.blitz.impl.MetadataStoreI.updateReferences_async(MetadataStoreI.java:230)
                        	at omero.api._MetadataStoreTie.updateReferences_async(_MetadataStoreTie.java:106)
                        	at omero.api._MetadataStoreDisp.___updateReferences(_MetadataStoreDisp.java:201)
                        	at omero.api._MetadataStoreDisp.__dispatch(_MetadataStoreDisp.java:378)
                        	at IceInternal.Incoming.invoke(Incoming.java:159)
                        	at Ice.ConnectionI.invokeAll(ConnectionI.java:2037)
                        	at Ice.ConnectionI.message(ConnectionI.java:972)
                        	at IceInternal.ThreadPool.run(ThreadPool.java:577)
                        	at IceInternal.ThreadPool.access$100(ThreadPool.java:12)
                        	at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971)
                        "
    serverExceptionClass = "ome.conditions.ApiUsageException"
    message = "Missing reference handler for omero.model.OriginalFile:2(ome.model.core.OriginalFile:Hash_20227590) --> Plate:0(ome.model.screen.Plate:Hash_25169139) reference."
	at ome.formats.OMEROMetadataStoreClient.saveToDB(OMEROMetadataStoreClient.java:2143)
	at ome.formats.importer.ImportLibrary.importMetadata(ImportLibrary.java:293)
	at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:442)
	at ome.formats.importer.gui.ImportHandler.importImages(ImportHandler.java:216)
	at ome.formats.importer.gui.ImportHandler.access$100(ImportHandler.java:59)
	at ome.formats.importer.gui.ImportHandler$2.run(ImportHandler.java:134)
	at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:441)
	at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303)
	at java.util.concurrent.FutureTask.run(FutureTask.java:138)
	at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.access$301(ScheduledThreadPoolExecutor.java:98)
	at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:206)
	at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886)
	at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908)
	at java.lang.Thread.run(Thread.java:680)
Caused by: omero.ApiUsageException
    serverStackTrace = "ome.conditions.ApiUsageException: Missing reference handler for omero.model.OriginalFile:2(ome.model.core.OriginalFile:Hash_20227590) --> Plate:0(ome.model.screen.Plate:Hash_25169139) reference.
                        	at ome.formats.OMEROMetadataStore.updateReferences(OMEROMetadataStore.java:539)
                        	at ome.services.blitz.impl.MetadataStoreI$5.doWork(MetadataStoreI.java:235)
                        	at sun.reflect.GeneratedMethodAccessor211.invoke(Unknown Source)
                        	at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
                        	at java.lang.reflect.Method.invoke(Unknown Source)
                        	at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307)
                        	at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183)
                        	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150)
                        	at ome.services.util.Executor$Impl$Interceptor.invoke(Executor.java:439)
                        	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
                        	at ome.security.basic.EventHandler.invoke(EventHandler.java:150)
                        	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
                        	at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:111)
                        	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
                        	at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108)
                        	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
                        	at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:231)
                        	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
                        	at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:111)
                        	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
                        	at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202)
                        	at $Proxy64.doWork(Unknown Source)
                        	at ome.services.util.Executor$Impl.execute(Executor.java:369)
                        	at ome.services.throttling.Adapter.run(Adapter.java:51)
                        	at ome.services.throttling.InThreadThrottlingStrategy.runnableCall(InThreadThrottlingStrategy.java:89)
                        	at ome.services.blitz.impl.AbstractAmdServant.runnableCall(AbstractAmdServant.java:150)
                        	at ome.services.blitz.impl.MetadataStoreI.updateReferences_async(MetadataStoreI.java:230)
                        	at omero.api._MetadataStoreTie.updateReferences_async(_MetadataStoreTie.java:106)
                        	at omero.api._MetadataStoreDisp.___updateReferences(_MetadataStoreDisp.java:201)
                        	at omero.api._MetadataStoreDisp.__dispatch(_MetadataStoreDisp.java:378)
                        	at IceInternal.Incoming.invoke(Incoming.java:159)
                        	at Ice.ConnectionI.invokeAll(ConnectionI.java:2037)
                        	at Ice.ConnectionI.message(ConnectionI.java:972)
                        	at IceInternal.ThreadPool.run(ThreadPool.java:577)
                        	at IceInternal.ThreadPool.access$100(ThreadPool.java:12)
                        	at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971)
                        "
    serverExceptionClass = "ome.conditions.ApiUsageException"
    message = "Missing reference handler for omero.model.OriginalFile:2(ome.model.core.OriginalFile:Hash_20227590) --> Plate:0(ome.model.screen.Plate:Hash_25169139) reference."
	at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
	at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39)
	at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27)
	at java.lang.reflect.Constructor.newInstance(Constructor.java:513)
	at java.lang.Class.newInstance0(Class.java:355)
	at java.lang.Class.newInstance(Class.java:308)
	at IceInternal.BasicStream$DynamicUserExceptionFactory.createAndThrow(BasicStream.java:2243)
	at IceInternal.BasicStream.throwException(BasicStream.java:1632)
	at IceInternal.Outgoing.throwUserException(Outgoing.java:442)
	at omero.api._MetadataStoreDelM.updateReferences(_MetadataStoreDelM.java:315)
	at omero.api.MetadataStorePrxHelper.updateReferences(MetadataStorePrxHelper.java:460)
	at omero.api.MetadataStorePrxHelper.updateReferences(MetadataStorePrxHelper.java:432)
	at ome.formats.OMEROMetadataStoreClient.saveToDB(OMEROMetadataStoreClient.java:2127)
	... 13 more

Legend:

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  • Ticket #5599

    • Property Owner changed from bwzloranger to cxallan
    • Property Sprint changed from 2011-06-02 (13) to 2011-06-16 (14)

  • Ticket #5599 – Description

    v1 v3  
    66[[BR]] 
    77From 3758 
    8 {{{ 
    9 java.lang.RuntimeException: omero.ApiUsageException 
    10     serverStackTrace = "ome.conditions.ApiUsageException: Missing reference handler for omero.model.OriginalFile:2(ome.model.core.OriginalFile:Hash_20227590) --> Plate:0(ome.model.screen.Plate:Hash_25169139) reference. 
    11                                 at ome.formats.OMEROMetadataStore.updateReferences(OMEROMetadataStore.java:539) 
    12                                 at ome.services.blitz.impl.MetadataStoreI$5.doWork(MetadataStoreI.java:235) 
    13                                 at sun.reflect.GeneratedMethodAccessor211.invoke(Unknown Source) 
    14                                 at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source) 
    15                                 at java.lang.reflect.Method.invoke(Unknown Source) 
    16                                 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) 
    17                                 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) 
    18                                 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) 
    19                                 at ome.services.util.Executor$Impl$Interceptor.invoke(Executor.java:439) 
    20                                 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) 
    21                                 at ome.security.basic.EventHandler.invoke(EventHandler.java:150) 
    22                                 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) 
    23                                 at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:111) 
    24                                 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) 
    25                                 at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108) 
    26                                 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) 
    27                                 at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:231) 
    28                                 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) 
    29                                 at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:111) 
    30                                 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) 
    31                                 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) 
    32                                 at $Proxy64.doWork(Unknown Source) 
    33                                 at ome.services.util.Executor$Impl.execute(Executor.java:369) 
    34                                 at ome.services.throttling.Adapter.run(Adapter.java:51) 
    35                                 at ome.services.throttling.InThreadThrottlingStrategy.runnableCall(InThreadThrottlingStrategy.java:89) 
    36                                 at ome.services.blitz.impl.AbstractAmdServant.runnableCall(AbstractAmdServant.java:150) 
    37                                 at ome.services.blitz.impl.MetadataStoreI.updateReferences_async(MetadataStoreI.java:230) 
    38                                 at omero.api._MetadataStoreTie.updateReferences_async(_MetadataStoreTie.java:106) 
    39                                 at omero.api._MetadataStoreDisp.___updateReferences(_MetadataStoreDisp.java:201) 
    40                                 at omero.api._MetadataStoreDisp.__dispatch(_MetadataStoreDisp.java:378) 
    41                                 at IceInternal.Incoming.invoke(Incoming.java:159) 
    42                                 at Ice.ConnectionI.invokeAll(ConnectionI.java:2037) 
    43                                 at Ice.ConnectionI.message(ConnectionI.java:972) 
    44                                 at IceInternal.ThreadPool.run(ThreadPool.java:577) 
    45                                 at IceInternal.ThreadPool.access$100(ThreadPool.java:12) 
    46                                 at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971) 
    47                         " 
    48     serverExceptionClass = "ome.conditions.ApiUsageException" 
    49     message = "Missing reference handler for omero.model.OriginalFile:2(ome.model.core.OriginalFile:Hash_20227590) --> Plate:0(ome.model.screen.Plate:Hash_25169139) reference." 
    50         at ome.formats.OMEROMetadataStoreClient.saveToDB(OMEROMetadataStoreClient.java:2143) 
    51         at ome.formats.importer.ImportLibrary.importMetadata(ImportLibrary.java:293) 
    52         at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:442) 
    53         at ome.formats.importer.gui.ImportHandler.importImages(ImportHandler.java:216) 
    54         at ome.formats.importer.gui.ImportHandler.access$100(ImportHandler.java:59) 
    55         at ome.formats.importer.gui.ImportHandler$2.run(ImportHandler.java:134) 
    56         at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:441) 
    57         at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303) 
    58         at java.util.concurrent.FutureTask.run(FutureTask.java:138) 
    59         at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.access$301(ScheduledThreadPoolExecutor.java:98) 
    60         at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:206) 
    61         at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886) 
    62         at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908) 
    63         at java.lang.Thread.run(Thread.java:680) 
    64 Caused by: omero.ApiUsageException 
    65     serverStackTrace = "ome.conditions.ApiUsageException: Missing reference handler for omero.model.OriginalFile:2(ome.model.core.OriginalFile:Hash_20227590) --> Plate:0(ome.model.screen.Plate:Hash_25169139) reference. 
    66                                 at ome.formats.OMEROMetadataStore.updateReferences(OMEROMetadataStore.java:539) 
    67                                 at ome.services.blitz.impl.MetadataStoreI$5.doWork(MetadataStoreI.java:235) 
    68                                 at sun.reflect.GeneratedMethodAccessor211.invoke(Unknown Source) 
    69                                 at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source) 
    70                                 at java.lang.reflect.Method.invoke(Unknown Source) 
    71                                 at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) 
    72                                 at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) 
    73                                 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) 
    74                                 at ome.services.util.Executor$Impl$Interceptor.invoke(Executor.java:439) 
    75                                 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) 
    76                                 at ome.security.basic.EventHandler.invoke(EventHandler.java:150) 
    77                                 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) 
    78                                 at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:111) 
    79                                 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) 
    80                                 at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108) 
    81                                 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) 
    82                                 at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:231) 
    83                                 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) 
    84                                 at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:111) 
    85                                 at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) 
    86                                 at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) 
    87                                 at $Proxy64.doWork(Unknown Source) 
    88                                 at ome.services.util.Executor$Impl.execute(Executor.java:369) 
    89                                 at ome.services.throttling.Adapter.run(Adapter.java:51) 
    90                                 at ome.services.throttling.InThreadThrottlingStrategy.runnableCall(InThreadThrottlingStrategy.java:89) 
    91                                 at ome.services.blitz.impl.AbstractAmdServant.runnableCall(AbstractAmdServant.java:150) 
    92                                 at ome.services.blitz.impl.MetadataStoreI.updateReferences_async(MetadataStoreI.java:230) 
    93                                 at omero.api._MetadataStoreTie.updateReferences_async(_MetadataStoreTie.java:106) 
    94                                 at omero.api._MetadataStoreDisp.___updateReferences(_MetadataStoreDisp.java:201) 
    95                                 at omero.api._MetadataStoreDisp.__dispatch(_MetadataStoreDisp.java:378) 
    96                                 at IceInternal.Incoming.invoke(Incoming.java:159) 
    97                                 at Ice.ConnectionI.invokeAll(ConnectionI.java:2037) 
    98                                 at Ice.ConnectionI.message(ConnectionI.java:972) 
    99                                 at IceInternal.ThreadPool.run(ThreadPool.java:577) 
    100                                 at IceInternal.ThreadPool.access$100(ThreadPool.java:12) 
    101                                 at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971) 
    102                         " 
    103     serverExceptionClass = "ome.conditions.ApiUsageException" 
    104     message = "Missing reference handler for omero.model.OriginalFile:2(ome.model.core.OriginalFile:Hash_20227590) --> Plate:0(ome.model.screen.Plate:Hash_25169139) reference." 
    105         at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) 
    106         at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39) 
    107         at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27) 
    108         at java.lang.reflect.Constructor.newInstance(Constructor.java:513) 
    109         at java.lang.Class.newInstance0(Class.java:355) 
    110         at java.lang.Class.newInstance(Class.java:308) 
    111         at IceInternal.BasicStream$DynamicUserExceptionFactory.createAndThrow(BasicStream.java:2243) 
    112         at IceInternal.BasicStream.throwException(BasicStream.java:1632) 
    113         at IceInternal.Outgoing.throwUserException(Outgoing.java:442) 
    114         at omero.api._MetadataStoreDelM.updateReferences(_MetadataStoreDelM.java:315) 
    115         at omero.api.MetadataStorePrxHelper.updateReferences(MetadataStorePrxHelper.java:460) 
    116         at omero.api.MetadataStorePrxHelper.updateReferences(MetadataStorePrxHelper.java:432) 
    117         at ome.formats.OMEROMetadataStoreClient.saveToDB(OMEROMetadataStoreClient.java:2127) 
    118         ... 13 more 
    1198 
    120 }}} 
     9Stack trace below. 

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