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Task #5599 (closed)

Opened 13 years ago

Closed 13 years ago

BUG:Feedback 3758 - Failure only after success

Reported by: omero-qa Owned by: cxallan
Priority: minor Milestone: OMERO-Beta4.3.1
Component: Import Version: n.a.
Keywords: n.a. Cc: ajpatterson
Resources: n.a. Referenced By: n.a.
References: n.a. Remaining Time: n.a.
Sprint: 2011-07-07 (1)

Description (last modified by jmoore)

These failed instantly after I had done other successful imports. If I quit importer and started it again then did import they started to work initially then failed after some time. That failure is ticket #5602 : BUG: Importer: Failure and incorrect dialog

​http://qa.openmicroscopy.org.uk/qa/feedback/3759/

and

​http://qa.openmicroscopy.org.uk/qa/feedback/3758/

From 3758

Stack trace below.

Change History (6)

comment:1 Changed 13 years ago by ajpatterson

  • Cc ajpatterson added; ajpatterson@… removed
  • Component changed from from QA to Import
  • Description modified (diff)
  • Milestone changed from Unscheduled to OMERO-Beta4.3
  • Sprint set to 2011-06-02 (13)

comment:2 Changed 13 years ago by jburel

  • Sprint changed from 2011-06-02 (13) to 2011-06-16 (14)

Moved from sprint 2011-06-02 (13)

comment:3 Changed 13 years ago by jmoore

  • Description modified (diff)
  • Owner changed from bwzloranger to cxallan 
java.lang.RuntimeException: omero.ApiUsageException
    serverStackTrace = "ome.conditions.ApiUsageException: Missing reference handler for omero.model.OriginalFile:2(ome.model.core.OriginalFile:Hash_20227590) --> Plate:0(ome.model.screen.Plate:Hash_25169139) reference.
                        	at ome.formats.OMEROMetadataStore.updateReferences(OMEROMetadataStore.java:539)
                        	at ome.services.blitz.impl.MetadataStoreI$5.doWork(MetadataStoreI.java:235)
                        	at sun.reflect.GeneratedMethodAccessor211.invoke(Unknown Source)
                        	at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
                        	at java.lang.reflect.Method.invoke(Unknown Source)
                        	at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307)
                        	at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183)
                        	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150)
                        	at ome.services.util.Executor$Impl$Interceptor.invoke(Executor.java:439)
                        	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
                        	at ome.security.basic.EventHandler.invoke(EventHandler.java:150)
                        	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
                        	at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:111)
                        	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
                        	at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108)
                        	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
                        	at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:231)
                        	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
                        	at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:111)
                        	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
                        	at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202)
                        	at $Proxy64.doWork(Unknown Source)
                        	at ome.services.util.Executor$Impl.execute(Executor.java:369)
                        	at ome.services.throttling.Adapter.run(Adapter.java:51)
                        	at ome.services.throttling.InThreadThrottlingStrategy.runnableCall(InThreadThrottlingStrategy.java:89)
                        	at ome.services.blitz.impl.AbstractAmdServant.runnableCall(AbstractAmdServant.java:150)
                        	at ome.services.blitz.impl.MetadataStoreI.updateReferences_async(MetadataStoreI.java:230)
                        	at omero.api._MetadataStoreTie.updateReferences_async(_MetadataStoreTie.java:106)
                        	at omero.api._MetadataStoreDisp.___updateReferences(_MetadataStoreDisp.java:201)
                        	at omero.api._MetadataStoreDisp.__dispatch(_MetadataStoreDisp.java:378)
                        	at IceInternal.Incoming.invoke(Incoming.java:159)
                        	at Ice.ConnectionI.invokeAll(ConnectionI.java:2037)
                        	at Ice.ConnectionI.message(ConnectionI.java:972)
                        	at IceInternal.ThreadPool.run(ThreadPool.java:577)
                        	at IceInternal.ThreadPool.access$100(ThreadPool.java:12)
                        	at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971)
                        "
    serverExceptionClass = "ome.conditions.ApiUsageException"
    message = "Missing reference handler for omero.model.OriginalFile:2(ome.model.core.OriginalFile:Hash_20227590) --> Plate:0(ome.model.screen.Plate:Hash_25169139) reference."
	at ome.formats.OMEROMetadataStoreClient.saveToDB(OMEROMetadataStoreClient.java:2143)
	at ome.formats.importer.ImportLibrary.importMetadata(ImportLibrary.java:293)
	at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:442)
	at ome.formats.importer.gui.ImportHandler.importImages(ImportHandler.java:216)
	at ome.formats.importer.gui.ImportHandler.access$100(ImportHandler.java:59)
	at ome.formats.importer.gui.ImportHandler$2.run(ImportHandler.java:134)
	at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:441)
	at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303)
	at java.util.concurrent.FutureTask.run(FutureTask.java:138)
	at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.access$301(ScheduledThreadPoolExecutor.java:98)
	at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:206)
	at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886)
	at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908)
	at java.lang.Thread.run(Thread.java:680)
Caused by: omero.ApiUsageException
    serverStackTrace = "ome.conditions.ApiUsageException: Missing reference handler for omero.model.OriginalFile:2(ome.model.core.OriginalFile:Hash_20227590) --> Plate:0(ome.model.screen.Plate:Hash_25169139) reference.
                        	at ome.formats.OMEROMetadataStore.updateReferences(OMEROMetadataStore.java:539)
                        	at ome.services.blitz.impl.MetadataStoreI$5.doWork(MetadataStoreI.java:235)
                        	at sun.reflect.GeneratedMethodAccessor211.invoke(Unknown Source)
                        	at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
                        	at java.lang.reflect.Method.invoke(Unknown Source)
                        	at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307)
                        	at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183)
                        	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150)
                        	at ome.services.util.Executor$Impl$Interceptor.invoke(Executor.java:439)
                        	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
                        	at ome.security.basic.EventHandler.invoke(EventHandler.java:150)
                        	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
                        	at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:111)
                        	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
                        	at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108)
                        	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
                        	at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:231)
                        	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
                        	at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:111)
                        	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
                        	at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202)
                        	at $Proxy64.doWork(Unknown Source)
                        	at ome.services.util.Executor$Impl.execute(Executor.java:369)
                        	at ome.services.throttling.Adapter.run(Adapter.java:51)
                        	at ome.services.throttling.InThreadThrottlingStrategy.runnableCall(InThreadThrottlingStrategy.java:89)
                        	at ome.services.blitz.impl.AbstractAmdServant.runnableCall(AbstractAmdServant.java:150)
                        	at ome.services.blitz.impl.MetadataStoreI.updateReferences_async(MetadataStoreI.java:230)
                        	at omero.api._MetadataStoreTie.updateReferences_async(_MetadataStoreTie.java:106)
                        	at omero.api._MetadataStoreDisp.___updateReferences(_MetadataStoreDisp.java:201)
                        	at omero.api._MetadataStoreDisp.__dispatch(_MetadataStoreDisp.java:378)
                        	at IceInternal.Incoming.invoke(Incoming.java:159)
                        	at Ice.ConnectionI.invokeAll(ConnectionI.java:2037)
                        	at Ice.ConnectionI.message(ConnectionI.java:972)
                        	at IceInternal.ThreadPool.run(ThreadPool.java:577)
                        	at IceInternal.ThreadPool.access$100(ThreadPool.java:12)
                        	at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971)
                        "
    serverExceptionClass = "ome.conditions.ApiUsageException"
    message = "Missing reference handler for omero.model.OriginalFile:2(ome.model.core.OriginalFile:Hash_20227590) --> Plate:0(ome.model.screen.Plate:Hash_25169139) reference."
	at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
	at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39)
	at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27)
	at java.lang.reflect.Constructor.newInstance(Constructor.java:513)
	at java.lang.Class.newInstance0(Class.java:355)
	at java.lang.Class.newInstance(Class.java:308)
	at IceInternal.BasicStream$DynamicUserExceptionFactory.createAndThrow(BasicStream.java:2243)
	at IceInternal.BasicStream.throwException(BasicStream.java:1632)
	at IceInternal.Outgoing.throwUserException(Outgoing.java:442)
	at omero.api._MetadataStoreDelM.updateReferences(_MetadataStoreDelM.java:315)
	at omero.api.MetadataStorePrxHelper.updateReferences(MetadataStorePrxHelper.java:460)
	at omero.api.MetadataStorePrxHelper.updateReferences(MetadataStorePrxHelper.java:432)
	at ome.formats.OMEROMetadataStoreClient.saveToDB(OMEROMetadataStoreClient.java:2127)
	... 13 more

comment:4 Changed 13 years ago by jburel

  • Milestone changed from OMERO-Beta4.3 to OMERO-Beta4.3.1
  • Sprint changed from 2011-06-16 (14) to 2011-06-30 (1)

Moved from sprint 2011-06-16 (14)

comment:5 Changed 13 years ago by cxallan

The archiving bugs were resolved later on in the milestone:OMERO-Beta4.3 testing phases. This issue is not reproducible with the milestone:OMERO-Beta4.3 release clients or the latest development clients of milestone:OMERO-Beta4.3.1.

comment:6 Changed 13 years ago by cxallan

  • Resolution set to worksforme
  • Status changed from new to closed
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