Warning: Can't synchronize with repository "(default)" (/home/git/ome.git does not appear to be a Git repository.). Look in the Trac log for more information.
Notice: In order to edit this ticket you need to be either: a Product Owner, The owner or the reporter of the ticket, or, in case of a Task not yet assigned, a team_member"

Task #4121 (closed)

Opened 13 years ago

Closed 4 years ago

Add support for Mirax data

Reported by: mlinkert Owned by:
Priority: major Milestone: Unscheduled
Component: Bio-Formats Version: 4.4.8
Keywords: new-format Cc: ofra.golani@…, h836472@…, nicolas.herve@…, vmeasyed@…, G.Landini@…, myilmaz@…, jonas.ogaard@…, tim.mciver@…, joachim.hehl@…, jch@…, brad.polant@…, fujisaws@…
Resources: n.a. Referenced By: n.a.
References: n.a. Remaining Time: 0.0d
Sprint: n.a.

Description (last modified by bramalingam)

This is a slide format; see the ​Mirax website and data in data/mirax/.

Another reference file:
​https://www.openmicroscopy.org/qa2/qa/feedback/16997/

Change History (39)

comment:1 Changed 13 years ago by jmoore

imported from ​bio-formats:#477

comment:2 Changed 13 years ago by mlinkert

  • Remaining Time set to 1
  • Sprint set to 2011-03-24 (8)

comment:3 Changed 13 years ago by mlinkert

  • Remaining Time changed from 1 to 0.75

comment:4 Changed 13 years ago by mlinkert

  • Status changed from new to accepted

comment:5 Changed 13 years ago by mlinkert

  • Remaining Time changed from 0.75 to 0.3

comment:6 Changed 13 years ago by jburel

  • Sprint changed from 2011-03-24 (8) to 2011-04-07 (9)

Moved from sprint 2011-03-24 (8)

comment:7 Changed 13 years ago by mlinkert

  • Owner mlinkert-x deleted
  • Status changed from accepted to new

comment:8 Changed 13 years ago by mlinkert

  • Owner set to mlinkert-x

comment:9 Changed 13 years ago by mlinkert

  • Sprint changed from 2011-04-07 (9) to 2011-04-21 (10)

comment:10 Changed 13 years ago by jburel

  • Sprint changed from 2011-04-21 (10) to 2011-05-05 (11)

Moved from sprint 2011-04-21 (10)

comment:11 Changed 13 years ago by mlinkert

  • Milestone changed from OMERO-Beta4.3 to Unscheduled
  • Sprint 2011-05-05 (11) deleted

comment:12 Changed 13 years ago by mlinkert

  • Cc balazs.balint@… added
  • Description modified (diff)

comment:13 Changed 13 years ago by mlinkert

  • Cc nicolas.herve@… added

comment:14 Changed 13 years ago by mlinkert

  • Cc vmeasyed@… added

comment:15 Changed 13 years ago by mlinkert

  • Cc G.Landini@… added
  • Remaining Time changed from 0.3 to 1

comment:16 Changed 13 years ago by mlinkert

  • Milestone changed from Unscheduled to OMERO-Beta4.4

comment:17 Changed 12 years ago by mlinkert

  • Sprint set to 2012-01-31 (7)

comment:18 Changed 12 years ago by mlinkert

  • Sprint changed from 2012-01-31 (7) to 2012-02-14 (8)

comment:19 Changed 12 years ago by jburel

  • Sprint changed from 2012-02-14 (8) to 2012-02-28 (9)

Moved from sprint 2012-02-14 (8)

comment:20 Changed 12 years ago by jburel

  • Sprint changed from 2012-02-28 (9) to 2012-03-13 (10)

Moved from sprint 2012-02-28 (9)

comment:21 Changed 12 years ago by jburel

  • Sprint changed from 2012-03-13 (10) to 2012-03-27 (11)

Moved from sprint 2012-03-13 (10)

comment:22 Changed 12 years ago by jburel

  • Sprint changed from 2012-03-27 (11) to 2012-04-10 (12)

Moved from sprint 2012-03-27 (11)

comment:23 Changed 12 years ago by mlinkert

  • Milestone changed from OMERO-Beta4.4 to OMERO-Beta4.4.1
  • Remaining Time changed from 1 to 2
  • Sprint 2012-04-10 (12) deleted

comment:24 Changed 12 years ago by mlinkert

  • Cc myilmaz@… added

comment:25 Changed 11 years ago by mlinkert

  • Cc h836472@… added; balazs.balint@… removed

comment:26 Changed 11 years ago by mlinkert

  • Cc jonas.ogaard@… added

comment:27 Changed 11 years ago by jamoore

  • Cc tim.mciver@… added
  • Version set to 4.4.8

Added for Tim at request (#bio-formats@freenode)

comment:28 Changed 11 years ago by mlinkert

  • Cc joachim.hehl@… added

comment:29 Changed 10 years ago by mlinkert

  • Keywords new-format added

comment:30 Changed 10 years ago by mlinkert

  • Cc jch@… added

See also QA 7993.

comment:31 Changed 10 years ago by mlinkert

  • Cc brad.polant@… added

comment:32 Changed 9 years ago by mtbcarroll

  • Cc ofra.golani@… added

Is it possible to extend Bio-formats to support digital slides acquired using 3D Histech digital scanner.
The files are of .mrxs format which accompanies by a folder of many .dat files.

comment:34 Changed 9 years ago by mtbcarroll

  • Cc fujisaws@… added

we are biting our fingers waiting for OME to support 3DHistech .mrxs files

comment:35 Changed 8 years ago by hflynn

Dear All,
You may be interested to read our latest blog post (​http://blog.openmicroscopy.org/file-formats/community/2016/01/06/format-support/) which details the work we have put into this and explains why we have not yet delivered support,
Thanks,
The OME Team

comment:36 Changed 8 years ago by bramalingam

  • Description modified (diff)

comment:37 Changed 8 years ago by jamoore

  • Milestone changed from 5.x to Unscheduled

comment:38 Changed 8 years ago by mlinkert

  • Owner mlinkert deleted

comment:39 Changed 4 years ago by mlinkert

  • Remaining Time changed from 2 to 0
  • Resolution set to fixed
  • Status changed from new to closed

It is now possible to convert .mrxs datasets to OME-TIFF as described here: ​https://www.glencoesoftware.com/blog/2019/12/09/converting-whole-slide-images-to-OME-TIFF.html

Note: See TracTickets for help on using tickets. You may also have a look at Agilo extensions to the ticket.

1.3.13-PRO © 2008-2011 Agilo Software all rights reserved (this page was served in: 0.72449 sec.)

© 2000-2014 University of Dundee & Open Microscopy Environment. Creative Commons Attribution 3.0 Unported License
OME source code is available under the GNU General public license or through commercial license from Glencoe Software

We're Hiring!