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- Timestamp:
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10/18/10 09:52:24 (14 years ago)
- Author:
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jburel
- Comment:
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| 3 | 3 | Comment: When I attempt to export to ome.tiff I get a tiff stack which ImageJ interprets as a tiff with 600 z slices. The correct structure is 2 channels, 12 z slices, and 25 t time points. I can set these manually in ImageJ. But I was hoping that ImageJ would interpret the ome.tiff correctly and I could avoid this step. Any suggestions? |
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| | 5 | I have been working on this issue some more and have some additional information. There seems to be a problem with how omero implements the ome.tif export. When I use the most recent LOCI plugin for ImageJ to export to ome.tif the resulting file is correct. When I use omero to export the file to ome.tif C and Z get mixed up. It appears that as you scroll through Z the images alternate between C. Also, I should mention that opening images in ImageJ using the LOCI Bio-Formats Importer resolves the stack order issue I mentioned originally in this comment. That was a psuedo-issue. The real problem is that the omero export functionality appears to be broken. |
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