Bug #1330 (closed)
Importer OME-TIFF
| Reported by: | jburel | Owned by: | bwzloranger |
|---|---|---|---|
| Priority: | critical | Cc: | bzwloranger |
| Sprint: | n.a. | ||
| Total Remaining Time: | n.a. |
Description
version 4.0.1
trying to import OME-TIFF generated in SimplePCI
java.lang.IllegalArgumentException: Invalid C index: 5/5 at loci.formats.FormatTools.getIndex(FormatTools.java:192) at loci.formats.in.OMETiffReader.initFile(OMETiffReader.java:247) at loci.formats.FormatReader.setId(FormatReader.java:327) at loci.formats.ImageReader.setId(ImageReader.java:581) at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:76)
References
Change History
comment:4 Changed 4 years ago by bwzloranger
This was an ome.tiff generated in SimplePCI. Not sure how compatible but will talk to Martin and see if we can get the image.
comment:5 Changed 4 years ago by bwzloranger
- Status changed from new to closed
- Resolution set to invalid
Close with user response:
Hi Brain,
"That particular error, I realized after i sent it, was because i was uploading a file that was corrupt already. This seems to be an issue with export from a micromanager 5D file to ome.tiff using LOCI in imageJ. We can work around this error by opening the micromanager files with loci and then exporting as ome.tiff. Files exported this way are always fine. Thanks for the response."
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