Warning: Can't synchronize with repository "(default)" (/home/git/ome.git does not appear to be a Git repository.). Look in the Trac log for more information.
Notice: In order to edit this ticket you need to be either: a Product Owner, The owner or the reporter of the ticket, or, in case of a Task not yet assigned, a team_member"

Task #12508 (closed)

Opened 10 years ago

Closed 10 years ago

Bug: ND2 position count parsing

Reported by: mlinkert Owned by: mlinkert
Priority: major Milestone: 5.1.0-m3
Component: Bio-Formats Version: 5.0.2
Keywords: ND2Reader Cc: dsudar@…
Resources: n.a. Referenced By: https://trello.com/c/AioepoWm/47-nd2-follow-ups
References: n.a. Remaining Time: n.a.
Sprint: n.a.

Description

See ​https://www.openmicroscopy.org/community/viewtopic.php?f=13&t=7588 and QA 9438. 5.0.3 detects the file as having 4 timepoints and 4 channels, when it should be 4 positions and 4 channels.

Physical pixel height is also missing from this dataset, though the width is present.

Change History (1)

comment:1 Changed 10 years ago by mlinkert

  • Resolution set to fixed
  • Status changed from new to closed

PR opened: ​https://github.com/openmicroscopy/bioformats/pull/1275

Note: See TracTickets for help on using tickets. You may also have a look at Agilo extensions to the ticket.

1.3.13-PRO © 2008-2011 Agilo Software all rights reserved (this page was served in: 0.63687 sec.)

© 2000-2014 University of Dundee & Open Microscopy Environment. Creative Commons Attribution 3.0 Unported License
OME source code is available under the GNU General public license or through commercial license from Glencoe Software

We're Hiring!