Task #11972 (closed)
Opened 10 years ago
Closed 10 years ago
Bug: fix dimension detection and plane reading for truncated Micromanager datasets
Reported by: | mlinkert | Owned by: | mlinkert |
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Priority: | major | Milestone: | 5.0.1 |
Component: | Bio-Formats | Version: | 5.0.0-rc1 |
Keywords: | n.a. | Cc: | david.knecht@… |
Resources: | n.a. | Referenced By: | n.a. |
References: | n.a. | Remaining Time: | n.a. |
Sprint: | n.a. |
Description
See http://www.openmicroscopy.org/community/viewtopic.php?f=13&t=7406#p13356 and QA 7885.
The metadata.txt file for truncated datasets (i.e. prematurely stopped acquisitions) still contains the metadata for the acquisition as it was first defined - so more planes than actually exist are present. setId needs to check if each file exists and reset the Z, C, and T dimensions accordingly.
Change History (1)
comment:1 Changed 10 years ago by mlinkert
- Resolution set to fixed
- Status changed from new to closed
Should be fixed by https://github.com/openmicroscopy/bioformats/pull/998